RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 AKAP6Q13023 2319 aa14.46□□□□□ -0.1
HMGA1-205ENST00000447654 IGLV11-55A0A075B6I3 123 aa14.46□□□□□ -0.1
HMGA1-205ENST00000447654 PRAC2D3DTV9 90 aa14.46□□□□□ -0.1
HMGA1-205ENST00000447654 RPL39LQ96EH5 51 aaKnown RBP14.46□□□□□ -0.1
HMGA1-205ENST00000447654 C2orf48Q96LS8 159 aa14.46□□□□□ -0.1
HMGA1-205ENST00000447654 BEX4Q9NWD9 120 aaPredicted RBP14.46□□□□□ -0.1
HMGA1-205ENST00000447654 MED13LQ71F56 2210 aa14.45□□□□□ -0.1
HMGA1-205ENST00000447654 IGLV1-47P01700 117 aa14.45□□□□□ -0.1
HMGA1-205ENST00000447654 ZNF22P17026 224 aaPredicted RBP14.45□□□□□ -0.1
HMGA1-205ENST00000447654 C9orf47Q6ZRZ4 202 aa14.45□□□□□ -0.1
HMGA1-205ENST00000447654 EDA2RQ9HAV5 297 aa14.45□□□□□ -0.1
HMGA1-205ENST00000447654 ABCA1O95477 2261 aa14.45□□□□□ -0.1
HMGA1-205ENST00000447654 F8W735 103 aaPredicted RBP14.44□□□□□ -0.1
HMGA1-205ENST00000447654 HIST1H4AP62805 103 aaKnown RBP14.44□□□□□ -0.1
HMGA1-205ENST00000447654 IGHV4OR15-8A0A075B7B6 117 aa14.44□□□□□ -0.1
HMGA1-205ENST00000447654 A0A087WW49 117 aa14.44□□□□□ -0.1
HMGA1-205ENST00000447654 OVOL1O14753 267 aa14.44□□□□□ -0.1
HMGA1-205ENST00000447654 IGFL4Q6B9Z1 124 aa14.44□□□□□ -0.1
HMGA1-205ENST00000447654 TRACP01848 142 aa14.43□□□□□ -0.1
HMGA1-205ENST00000447654 GPHB5Q86YW7 130 aa14.43□□□□□ -0.1
HMGA1-205ENST00000447654 SPTAN1Q13813 2472 aaKnown RBP14.43□□□□□ -0.1
HMGA1-205ENST00000447654 IGHV1-69P01742 117 aa14.43□□□□□ -0.1
HMGA1-205ENST00000447654 FANCD2OSQ96PS1 177 aa14.42□□□□□ -0.1
HMGA1-205ENST00000447654 PEMTQ9UBM1 199 aa14.42□□□□□ -0.1
HMGA1-205ENST00000447654 BUB1B-PAK6H3BSN5 160 aa14.41□□□□□ -0.1
HMGA1-205ENST00000447654 UBE2E1P51965 193 aa14.41□□□□□ -0.1
HMGA1-205ENST00000447654 KLK5Q9Y337 293 aaPredicted RBP14.41□□□□□ -0.1
HMGA1-205ENST00000447654 DCANP1Q8TF63 244 aa14.41□□□□□ -0.1
HMGA1-205ENST00000447654 ZFAND3Q9H8U3 227 aa14.41□□□□□ -0.1
HMGA1-205ENST00000447654 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.4□□□□□ -0.1
HMGA1-205ENST00000447654 A0A0J9YXY3 114 aa14.4□□□□□ -0.1
HMGA1-205ENST00000447654 A0A1W2PPR1 153 aa14.4□□□□□ -0.1
HMGA1-205ENST00000447654 F5H768 121 aa14.4□□□□□ -0.1
HMGA1-205ENST00000447654 VCYO14598 125 aa14.4□□□□□ -0.1
HMGA1-205ENST00000447654 POLR2KP53803 58 aaKnown RBP14.39□□□□□ -0.11
HMGA1-205ENST00000447654 DPH3Q96FX2 82 aa14.39□□□□□ -0.11
HMGA1-205ENST00000447654 BAHCC1Q9P281 2608 aa14.38□□□□□ -0.11
HMGA1-205ENST00000447654 CTSGP08311 255 aa14.37□□□□□ -0.11
HMGA1-205ENST00000447654 COX7A1P24310 79 aa14.37□□□□□ -0.11
HMGA1-205ENST00000447654 DAND5Q8N907 189 aa14.37□□□□□ -0.11
HMGA1-205ENST00000447654 NPBQ8NG41 125 aa14.37□□□□□ -0.11
HMGA1-205ENST00000447654 SMCR5Q8TEV8 140 aa14.37□□□□□ -0.11
HMGA1-205ENST00000447654 LITAFQ99732 161 aa14.37□□□□□ -0.11
HMGA1-205ENST00000447654 PHLDA3Q9Y5J5 127 aa14.37□□□□□ -0.11
HMGA1-205ENST00000447654 CELSR1Q9NYQ6 3014 aa14.37□□□□□ -0.11
HMGA1-205ENST00000447654 MAP1AP78559 2803 aaPredicted RBP14.37□□□□□ -0.11
HMGA1-205ENST00000447654 NBR2O15453 112 aa14.36□□□□□ -0.11
HMGA1-205ENST00000447654 BUB3O43684 328 aa14.36□□□□□ -0.11
HMGA1-205ENST00000447654 MGPP08493 103 aa14.36□□□□□ -0.11
HMGA1-205ENST00000447654 FLNCQ14315 2725 aa14.36□□□□□ -0.11
HMGA1-205ENST00000447654 WNK2Q9Y3S1 2297 aa14.36□□□□□ -0.11
HMGA1-205ENST00000447654 C11orf71Q6IPW1 123 aa14.36□□□□□ -0.11
HMGA1-205ENST00000447654 KIR2DL5BQ8NHK3 375 aa14.36□□□□□ -0.11
HMGA1-205ENST00000447654 NXPH4O95158 308 aa14.35□□□□□ -0.11
HMGA1-205ENST00000447654 RNF182Q8N6D2 247 aa14.35□□□□□ -0.11
HMGA1-205ENST00000447654 I3L3M4 83 aa14.34□□□□□ -0.11
HMGA1-205ENST00000447654 CLEC2BQ92478 149 aa14.34□□□□□ -0.11
HMGA1-205ENST00000447654 S4R3C0 116 aa14.34□□□□□ -0.11
HMGA1-205ENST00000447654 TRAV21A0A0B4J279 112 aa14.34□□□□□ -0.11
HMGA1-205ENST00000447654 S100A4P26447 101 aaKnown RBP14.34□□□□□ -0.11
HMGA1-205ENST00000447654 LY6LH3BQJ8 138 aa14.33□□□□□ -0.11
HMGA1-205ENST00000447654 TIMM21Q9BVV7 248 aa14.33□□□□□ -0.11
HMGA1-205ENST00000447654 IGSF10Q6WRI0 2623 aa14.33□□□□□ -0.12
HMGA1-205ENST00000447654 MIAQ16674 131 aa14.33□□□□□ -0.12
HMGA1-205ENST00000447654 TRBV6-5A0A0K0K1A5 114 aa14.32□□□□□ -0.12
HMGA1-205ENST00000447654 TRBV27A0A0K0K1C4 114 aa14.32□□□□□ -0.12
HMGA1-205ENST00000447654 RHOHQ15669 191 aa14.32□□□□□ -0.12
HMGA1-205ENST00000447654 TMEM61Q8N0U2 210 aa14.32□□□□□ -0.12
HMGA1-205ENST00000447654 hADV29S1A0JD25 119 aa14.32□□□□□ -0.12
HMGA1-205ENST00000447654 RPL39P62891 51 aaKnown RBP14.32□□□□□ -0.12
HMGA1-205ENST00000447654 LY6G5BQ8NDX9 201 aa14.32□□□□□ -0.12
HMGA1-205ENST00000447654 PRORYQ9H606 182 aa14.32□□□□□ -0.12
HMGA1-205ENST00000447654 TRAV8-3A0A0A6YYJ7 113 aa14.31□□□□□ -0.12
HMGA1-205ENST00000447654 RPL18AQ02543 176 aaKnown RBP14.3□□□□□ -0.12
HMGA1-205ENST00000447654 NSUN5P1Q3KNT7 163 aa14.3□□□□□ -0.12
HMGA1-205ENST00000447654 LINC00477Q96M19 166 aa14.3□□□□□ -0.12
HMGA1-205ENST00000447654 KIF25-AS1Q9Y6Z4 181 aa14.3□□□□□ -0.12
HMGA1-205ENST00000447654 TIMM17BO60830 172 aa14.3□□□□□ -0.12
HMGA1-205ENST00000447654 INAFM2P0DMQ5 153 aa14.3□□□□□ -0.12
HMGA1-205ENST00000447654 UTP20O75691 2785 aaKnown RBP14.3□□□□□ -0.12
HMGA1-205ENST00000447654 LINC00315P59091 139 aa14.29□□□□□ -0.12
HMGA1-205ENST00000447654 CELSR2Q9HCU4 2923 aa14.29□□□□□ -0.12
HMGA1-205ENST00000447654 TRBV7-1A0A0A6YYK4 115 aa14.29□□□□□ -0.12
HMGA1-205ENST00000447654 FAM222AQ5U5X8 452 aa14.29□□□□□ -0.12
HMGA1-205ENST00000447654 SERP2Q8N6R1 65 aa14.29□□□□□ -0.12
HMGA1-205ENST00000447654 DUX5Q96PT3 197 aa14.29□□□□□ -0.12
HMGA1-205ENST00000447654 CSMD2Q7Z408 3487 aa14.28□□□□□ -0.12
HMGA1-205ENST00000447654 CRYBG3Q68DQ2 2970 aa14.28□□□□□ -0.12
HMGA1-205ENST00000447654 PRSS2P07478 247 aa14.27□□□□□ -0.12
HMGA1-205ENST00000447654 Q5XG85 94 aa14.27□□□□□ -0.12
HMGA1-205ENST00000447654 C19orf84I3L1E1 186 aa14.27□□□□□ -0.13
HMGA1-205ENST00000447654 EEF1AKMT3Q96AZ1 226 aa14.27□□□□□ -0.13
HMGA1-205ENST00000447654 IGHV3-30-3P0DP02 117 aa14.26□□□□□ -0.13
HMGA1-205ENST00000447654 PRR9Q5T870 116 aa14.26□□□□□ -0.13
HMGA1-205ENST00000447654 UPK3BQ9BT76 320 aa14.26□□□□□ -0.13
HMGA1-205ENST00000447654 TRAV41A0A0B4J266 112 aa14.26□□□□□ -0.13
HMGA1-205ENST00000447654 NDUFC2-KCTD14E9PQ53 114 aa14.25□□□□□ -0.13
HMGA1-205ENST00000447654 COX7A2LO14548 114 aa14.25□□□□□ -0.13
HMGA1-205ENST00000447654 ZFP36P26651 326 aaKnown RBP14.25□□□□□ -0.13
HMGA1-205ENST00000447654 KLK9Q2XQG4 91 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 163.6 ms