RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TRAV7A0A075B6U4 112 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 SPRR3Q9UBC9 169 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 ADAMTS20P59510 1910 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 CCL24O00175 119 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 PTPRBP23467 1997 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 GPHB5Q86YW7 130 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 CNFNQ9BYD5 112 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 A0A1W2PRX2 142 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 CD24P25063 80 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 IGLV11-55A0A075B6I3 123 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 INSL3P51460 131 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 KLHL30-AS1Q8NEE0 82 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 F8WDY8 70 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 LYPD6Q86Y78 171 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 EFNA2O43921 213 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 SMIM9A6NGZ8 99 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 LOC107984640A0A0U1RRK4 108 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 LHBP01229 141 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 C8orf49Q96NF6 230 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 PRO0628Q9UI54 55 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 TCL1BO95988 128 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 COX7BP24311 80 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 UBE2D2P62837 147 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 LST1O00453 97 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 MSRB2Q9Y3D2 182 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 ANGP03950 147 aaKnown RBP5.59□□□□□ -1.51
VPS53-204ENST00000437048 CFAP126Q5VTH2 177 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 F5H768 121 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 NDUFS5O43920 106 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 MSMBP08118 114 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 C3orf56Q8N813 242 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 DKK1O94907 266 aa5.59□□□□□ -1.51
VPS53-204ENST00000437048 ABCA12Q86UK0 2595 aa5.59□□□□□ -1.52
VPS53-204ENST00000437048 IGHV3-30-3P0DP02 117 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 WI2-2373I1.2A0A1W2PRP0 233 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 ATP6V0E1O15342 81 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 LECT2O14960 151 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 DEFB131AP59861 70 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 IGF2-ASQ6U949 168 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 DHRS4-AS1Q9P1J3 65 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 TRBV6-5A0A0K0K1A5 114 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 IGLC6P0CF74 106 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 C11orf1Q9H5F2 150 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 GNLYP22749 145 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 SP5Q6BEB4 398 aaPredicted RBP5.58□□□□□ -1.52
VPS53-204ENST00000437048 UBE2E2Q96LR5 201 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 RAI1Q7Z5J4 1906 aaPredicted RBP5.58□□□□□ -1.52
VPS53-204ENST00000437048 SPAARA0A1B0GVQ0 90 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 SPINK13Q1W4C9 94 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 UBE2D4Q9Y2X8 147 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 JMJD1CQ15652 2540 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 IGKV1-17P01599 117 aa5.58□□□□□ -1.52
VPS53-204ENST00000437048 C14orf132Q9NPU4 83 aa5.57□□□□□ -1.52
VPS53-204ENST00000437048 WDR86Q86TI4 376 aa5.57□□□□□ -1.52
VPS53-204ENST00000437048 LOXP28300 417 aaPredicted RBP5.57□□□□□ -1.52
VPS53-204ENST00000437048 C20orf197Q8N268 126 aa5.57□□□□□ -1.52
VPS53-204ENST00000437048 NEXN-AS1Q8NBZ9 246 aa5.57□□□□□ -1.52
VPS53-204ENST00000437048 TMEM263Q8WUH6 116 aaKnown RBP5.57□□□□□ -1.52
VPS53-204ENST00000437048 NAV2Q8IVL1 2488 aa5.57□□□□□ -1.52
VPS53-204ENST00000437048 IGHV4OR15-8A0A075B7B6 117 aa5.57□□□□□ -1.52
VPS53-204ENST00000437048 A0A087WW49 117 aa5.57□□□□□ -1.52
VPS53-204ENST00000437048 I3L2K1 104 aa5.57□□□□□ -1.52
VPS53-204ENST00000437048 P0C879 139 aa5.57□□□□□ -1.52
VPS53-204ENST00000437048 RS1O15537 224 aa5.57□□□□□ -1.52
VPS53-204ENST00000437048 IGHV3-33P01772 117 aa5.57□□□□□ -1.52
VPS53-204ENST00000437048 IL17DQ8TAD2 202 aa5.57□□□□□ -1.52
VPS53-204ENST00000437048 HTN3P15516 51 aa5.56□□□□□ -1.52
VPS53-204ENST00000437048 CAMK2N2Q96S95 79 aa5.56□□□□□ -1.52
VPS53-204ENST00000437048 WISP1O95388 367 aa5.56□□□□□ -1.52
VPS53-204ENST00000437048 LINC01560Q8TB33 94 aa5.56□□□□□ -1.52
VPS53-204ENST00000437048 LINC00205P59089 165 aa5.56□□□□□ -1.52
VPS53-204ENST00000437048 NFE4Q86UQ8 179 aa5.56□□□□□ -1.52
VPS53-204ENST00000437048 MBD6Q96DN6 1003 aa5.56□□□□□ -1.52
VPS53-204ENST00000437048 PRORYQ9H606 182 aa5.56□□□□□ -1.52
VPS53-204ENST00000437048 SPART-AS1P0CW21 52 aa5.56□□□□□ -1.52
VPS53-204ENST00000437048 K7EIM0 57 aa5.56□□□□□ -1.52
VPS53-204ENST00000437048 ATP1A1-AS1Q5TC04 95 aa5.56□□□□□ -1.52
VPS53-204ENST00000437048 A6NED7 52 aa5.55□□□□□ -1.52
VPS53-204ENST00000437048 NDPQ00604 133 aa5.55□□□□□ -1.52
VPS53-204ENST00000437048 VPREB3Q9UKI3 123 aa5.55□□□□□ -1.52
VPS53-204ENST00000437048 USP24Q9UPU5 2620 aa5.55□□□□□ -1.52
VPS53-204ENST00000437048 ZNF706Q9Y5V0 76 aaPredicted RBP5.55□□□□□ -1.52
VPS53-204ENST00000437048 C4orf48Q5BLP8 95 aa5.55□□□□□ -1.52
VPS53-204ENST00000437048 LIMD2Q9BT23 127 aa5.55□□□□□ -1.52
VPS53-204ENST00000437048 MT-ATP8P03928 68 aa5.55□□□□□ -1.52
VPS53-204ENST00000437048 DEFB130BP0DP73 79 aa5.55□□□□□ -1.52
VPS53-204ENST00000437048 DEFB130AP0DP74 79 aa5.55□□□□□ -1.52
VPS53-204ENST00000437048 IGHV4-4A0A075B6R2 117 aa5.55□□□□□ -1.52
VPS53-204ENST00000437048 TRBV27A0A0K0K1C4 114 aa5.55□□□□□ -1.52
VPS53-204ENST00000437048 SPRY2O43597 315 aa5.54□□□□□ -1.52
VPS53-204ENST00000437048 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.54□□□□□ -1.52
VPS53-204ENST00000437048 IGKV3D-7A0A0C4DH55 119 aa5.54□□□□□ -1.52
VPS53-204ENST00000437048 TEX49A0A1B0GTD5 131 aa5.54□□□□□ -1.52
VPS53-204ENST00000437048 B9D2Q9BPU9 175 aa5.54□□□□□ -1.52
VPS53-204ENST00000437048 A0A0J9YY99 117 aa5.54□□□□□ -1.52
VPS53-204ENST00000437048 GATA1P15976 413 aaPredicted RBP5.54□□□□□ -1.52
VPS53-204ENST00000437048 A0A0J9YXV3 536 aa5.54□□□□□ -1.52
VPS53-204ENST00000437048 PRSS33Q8NF86 280 aa5.54□□□□□ -1.52
VPS53-204ENST00000437048 TDRG1Q3Y452 100 aa5.54□□□□□ -1.52
VPS53-204ENST00000437048 ZMAT4Q9H898 229 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms