RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 CTSGP08311 255 aa9.31□□□□□ -0.92
CCDC88A-207ENST00000436346 LRCOL1A6NCL2 159 aa9.31□□□□□ -0.92
CCDC88A-207ENST00000436346 IGLV3-1P01715 115 aa9.31□□□□□ -0.92
CCDC88A-207ENST00000436346 IL17DQ8TAD2 202 aa9.31□□□□□ -0.92
CCDC88A-207ENST00000436346 C16orf54Q6UWD8 224 aa9.31□□□□□ -0.92
CCDC88A-207ENST00000436346 C11orf45Q8TAV5 145 aa9.31□□□□□ -0.92
CCDC88A-207ENST00000436346 GATA1P15976 413 aaPredicted RBP9.31□□□□□ -0.92
CCDC88A-207ENST00000436346 PLA2G5P39877 138 aa9.31□□□□□ -0.92
CCDC88A-207ENST00000436346 KLK12Q9UKR0 248 aa9.31□□□□□ -0.92
CCDC88A-207ENST00000436346 TRBV12-3P01733 135 aa9.31□□□□□ -0.92
CCDC88A-207ENST00000436346 GTSF1Q8WW33 167 aa9.3□□□□□ -0.92
CCDC88A-207ENST00000436346 C14orf177Q52M58 125 aa9.3□□□□□ -0.92
CCDC88A-207ENST00000436346 C20orf144Q9BQM9 153 aa9.3□□□□□ -0.92
CCDC88A-207ENST00000436346 POU2AF1Q16633 256 aa9.3□□□□□ -0.92
CCDC88A-207ENST00000436346 ETDBQ3ZM63 59 aa9.3□□□□□ -0.92
CCDC88A-207ENST00000436346 LINC01545Q5VT33 79 aa9.3□□□□□ -0.92
CCDC88A-207ENST00000436346 RPL39P62891 51 aaKnown RBP9.3□□□□□ -0.92
CCDC88A-207ENST00000436346 OPRPNQ99935 248 aaPredicted RBP9.3□□□□□ -0.92
CCDC88A-207ENST00000436346 C14orf132Q9NPU4 83 aa9.29□□□□□ -0.92
CCDC88A-207ENST00000436346 C5orf47Q569G3 176 aa9.29□□□□□ -0.92
CCDC88A-207ENST00000436346 B9D2Q9BPU9 175 aa9.29□□□□□ -0.92
CCDC88A-207ENST00000436346 IGLL1P15814 213 aa9.29□□□□□ -0.92
CCDC88A-207ENST00000436346 CRYBA4P53673 196 aa9.29□□□□□ -0.92
CCDC88A-207ENST00000436346 Q8N9W7 124 aa9.29□□□□□ -0.92
CCDC88A-207ENST00000436346 WFDC11Q8NEX6 87 aa9.29□□□□□ -0.92
CCDC88A-207ENST00000436346 PCP2Q8IVA1 136 aa9.29□□□□□ -0.92
CCDC88A-207ENST00000436346 DAZAP2Q15038 168 aaPredicted RBP9.28□□□□□ -0.92
CCDC88A-207ENST00000436346 PROP1O75360 226 aa9.28□□□□□ -0.92
CCDC88A-207ENST00000436346 GPHB5Q86YW7 130 aa9.28□□□□□ -0.92
CCDC88A-207ENST00000436346 DEFB125Q8N687 156 aa9.28□□□□□ -0.92
CCDC88A-207ENST00000436346 KRTAP27-1Q3LI81 207 aa9.28□□□□□ -0.92
CCDC88A-207ENST00000436346 H3BQ85 93 aa9.27□□□□□ -0.92
CCDC88A-207ENST00000436346 H0Y9J4 135 aa9.27□□□□□ -0.93
CCDC88A-207ENST00000436346 K7EP13 123 aa9.27□□□□□ -0.93
CCDC88A-207ENST00000436346 RBM3P98179 157 aaKnown RBP9.27□□□□□ -0.93
CCDC88A-207ENST00000436346 NDUFA11Q86Y39 141 aa9.27□□□□□ -0.93
CCDC88A-207ENST00000436346 INSL3P51460 131 aa9.27□□□□□ -0.93
CCDC88A-207ENST00000436346 C12orf74Q32Q52 190 aa9.27□□□□□ -0.93
CCDC88A-207ENST00000436346 IGKV1-17P01599 117 aa9.27□□□□□ -0.93
CCDC88A-207ENST00000436346 MYCNOSP40205 109 aa9.27□□□□□ -0.93
CCDC88A-207ENST00000436346 WFDC9Q8NEX5 89 aa9.27□□□□□ -0.93
CCDC88A-207ENST00000436346 NDUFS6O75380 124 aaKnown RBP9.26□□□□□ -0.93
CCDC88A-207ENST00000436346 CRYGDP07320 174 aa9.26□□□□□ -0.93
CCDC88A-207ENST00000436346 IGKV2-24A0A0C4DH68 120 aa9.26□□□□□ -0.93
CCDC88A-207ENST00000436346 MP68P56378 58 aa9.26□□□□□ -0.93
CCDC88A-207ENST00000436346 TRAV26-1A0A087WT03 109 aa9.26□□□□□ -0.93
CCDC88A-207ENST00000436346 SPAG11BQ08648 103 aa9.26□□□□□ -0.93
CCDC88A-207ENST00000436346 PRR20EP86478 221 aa9.26□□□□□ -0.93
CCDC88A-207ENST00000436346 PRR20CP86479 221 aa9.26□□□□□ -0.93
CCDC88A-207ENST00000436346 PRR20DP86480 221 aa9.26□□□□□ -0.93
CCDC88A-207ENST00000436346 PRR20BP86481 221 aa9.26□□□□□ -0.93
CCDC88A-207ENST00000436346 PRR20AP86496 221 aa9.26□□□□□ -0.93
CCDC88A-207ENST00000436346 SIVA1O15304 175 aa9.26□□□□□ -0.93
CCDC88A-207ENST00000436346 SPANXDQ9BXN6 97 aa9.26□□□□□ -0.93
CCDC88A-207ENST00000436346 PRORYQ9H606 182 aa9.26□□□□□ -0.93
CCDC88A-207ENST00000436346 SPATA25Q9BR10 227 aa9.25□□□□□ -0.93
CCDC88A-207ENST00000436346 DEFB1P60022 68 aa9.25□□□□□ -0.93
CCDC88A-207ENST00000436346 INAFM1C9JVW0 142 aa9.25□□□□□ -0.93
CCDC88A-207ENST00000436346 MDFICQ9P1T7 246 aa9.25□□□□□ -0.93
CCDC88A-207ENST00000436346 CXCL5P42830 114 aa9.25□□□□□ -0.93
CCDC88A-207ENST00000436346 TMEM258P61165 79 aa9.25□□□□□ -0.93
CCDC88A-207ENST00000436346 CFC1BP0CG36 223 aa9.24□□□□□ -0.93
CCDC88A-207ENST00000436346 CFC1P0CG37 223 aa9.24□□□□□ -0.93
CCDC88A-207ENST00000436346 NREPQ16612 68 aa9.24□□□□□ -0.93
CCDC88A-207ENST00000436346 UNQ9165/PRO28630Q6UXU0 137 aa9.24□□□□□ -0.93
CCDC88A-207ENST00000436346 TMEM61Q8N0U2 210 aa9.24□□□□□ -0.93
CCDC88A-207ENST00000436346 A0A1W2PNU3 283 aaPredicted RBP9.24□□□□□ -0.93
CCDC88A-207ENST00000436346 C10orf91Q5T1B1 145 aa9.24□□□□□ -0.93
CCDC88A-207ENST00000436346 FGF23Q9GZV9 251 aaPredicted RBP9.24□□□□□ -0.93
CCDC88A-207ENST00000436346 DNAH12Q6ZR08 3092 aa9.23□□□□□ -0.93
CCDC88A-207ENST00000436346 TEX22C9J3V5 150 aa9.23□□□□□ -0.93
CCDC88A-207ENST00000436346 TOMM6Q96B49 74 aa9.23□□□□□ -0.93
CCDC88A-207ENST00000436346 GAGE12HA6NDE8 117 aa9.23□□□□□ -0.93
CCDC88A-207ENST00000436346 HILS1P60008 231 aa9.23□□□□□ -0.93
CCDC88A-207ENST00000436346 Q8N7P7 452 aa9.23□□□□□ -0.93
CCDC88A-207ENST00000436346 MAP6D1Q9H9H5 199 aa9.22□□□□□ -0.93
CCDC88A-207ENST00000436346 FLG2Q5D862 2391 aaPredicted RBP9.22□□□□□ -0.93
CCDC88A-207ENST00000436346 PRAC2D3DTV9 90 aa9.22□□□□□ -0.93
CCDC88A-207ENST00000436346 IGKV4-1P06312 121 aa9.22□□□□□ -0.93
CCDC88A-207ENST00000436346 DIRC1Q969H9 104 aa9.22□□□□□ -0.93
CCDC88A-207ENST00000436346 A0A1B0GX51 115 aa9.22□□□□□ -0.93
CCDC88A-207ENST00000436346 Q8NA96 180 aa9.22□□□□□ -0.93
CCDC88A-207ENST00000436346 K7EMT4 169 aa9.22□□□□□ -0.93
CCDC88A-207ENST00000436346 HIGD2BQ4VC39 106 aa9.21□□□□□ -0.93
CCDC88A-207ENST00000436346 IGHV4-31P0DP07 118 aa9.21□□□□□ -0.93
CCDC88A-207ENST00000436346 ZNF747Q9BV97 191 aa9.21□□□□□ -0.93
CCDC88A-207ENST00000436346 MSRB1Q9NZV6 116 aa9.21□□□□□ -0.94
CCDC88A-207ENST00000436346 LINC00269Q8N2A0 174 aa9.21□□□□□ -0.94
CCDC88A-207ENST00000436346 FAM110AQ9BQ89 295 aa9.21□□□□□ -0.94
CCDC88A-207ENST00000436346 H0YGX0 51 aa9.21□□□□□ -0.94
CCDC88A-207ENST00000436346 CTRLP40313 264 aa9.21□□□□□ -0.94
CCDC88A-207ENST00000436346 MUSTN1Q8IVN3 82 aa9.21□□□□□ -0.94
CCDC88A-207ENST00000436346 LGALS9O00182 355 aa9.2□□□□□ -0.94
CCDC88A-207ENST00000436346 LINC01620Q4KN68 170 aa9.2□□□□□ -0.94
CCDC88A-207ENST00000436346 IGKV3D-7A0A0C4DH55 119 aa9.2□□□□□ -0.94
CCDC88A-207ENST00000436346 WI2-2373I1.2A0A1W2PRP0 233 aa9.2□□□□□ -0.94
CCDC88A-207ENST00000436346 Q6ZVH6 145 aa9.2□□□□□ -0.94
CCDC88A-207ENST00000436346 TMEM89A2RUT3 159 aa9.2□□□□□ -0.94
CCDC88A-207ENST00000436346 A0A0J9YXV3 536 aa9.19□□□□□ -0.94
CCDC88A-207ENST00000436346 CCL25O15444 150 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms