RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 V9GYV3 84 aa12.66□□□□□ -0.38
SHH-203ENST00000435425 A0A087WWC5 75 aa12.65□□□□□ -0.38
SHH-203ENST00000435425 SMIM15Q7Z3B0 74 aa12.65□□□□□ -0.38
SHH-203ENST00000435425 DNAH2Q9P225 4427 aa12.65□□□□□ -0.38
SHH-203ENST00000435425 HIGD1CA8MV81 97 aa12.64□□□□□ -0.39
SHH-203ENST00000435425 H7C1H1 209 aa12.64□□□□□ -0.39
SHH-203ENST00000435425 M0QY20 66 aa12.64□□□□□ -0.39
SHH-203ENST00000435425 FOXA3P55318 350 aaPredicted RBP12.64□□□□□ -0.39
SHH-203ENST00000435425 LINC01556Q5JQF7 62 aa12.64□□□□□ -0.39
SHH-203ENST00000435425 Q8N3U1 123 aa12.63□□□□□ -0.39
SHH-203ENST00000435425 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.63□□□□□ -0.39
SHH-203ENST00000435425 GFRA4Q9GZZ7 299 aa12.63□□□□□ -0.39
SHH-203ENST00000435425 A0A1B0GVY2 172 aa12.62□□□□□ -0.39
SHH-203ENST00000435425 RASL11AQ6T310 242 aa12.62□□□□□ -0.39
SHH-203ENST00000435425 C10orf126Q8N4M7 172 aa12.62□□□□□ -0.39
SHH-203ENST00000435425 DNAH17Q9UFH2 4485 aa12.61□□□□□ -0.39
SHH-203ENST00000435425 TRAV26-2A0A0B4J265 109 aa12.61□□□□□ -0.39
SHH-203ENST00000435425 A0A1B0GUT8 65 aa12.61□□□□□ -0.39
SHH-203ENST00000435425 FAM231BA6NCW3 169 aa12.61□□□□□ -0.39
SHH-203ENST00000435425 K7EP13 123 aa12.61□□□□□ -0.39
SHH-203ENST00000435425 BTF3P20290 206 aaKnown RBP12.61□□□□□ -0.39
SHH-203ENST00000435425 DNAJC30Q96LL9 226 aa12.61□□□□□ -0.39
SHH-203ENST00000435425 NUP35Q8NFH5 326 aa12.6□□□□□ -0.39
SHH-203ENST00000435425 DAZ4Q86SG3 579 aaKnown RBP12.59□□□□□ -0.39
SHH-203ENST00000435425 NFE4Q86UQ8 179 aa12.59□□□□□ -0.39
SHH-203ENST00000435425 GATD1Q8NB37 220 aa12.59□□□□□ -0.39
SHH-203ENST00000435425 Q9HAA7 133 aa12.59□□□□□ -0.39
SHH-203ENST00000435425 NIT2Q9NQR4 276 aa12.59□□□□□ -0.39
SHH-203ENST00000435425 DAZ3Q9NR90 486 aaKnown RBP12.59□□□□□ -0.39
SHH-203ENST00000435425 NAT8BQ9UHF3 227 aa12.59□□□□□ -0.39
SHH-203ENST00000435425 URGCP-MRPS24S4R325 110 aa12.59□□□□□ -0.39
SHH-203ENST00000435425 TRBV6-8A0A0A6YYG3 113 aa12.58□□□□□ -0.4
SHH-203ENST00000435425 IBA57-AS1B1ANH7 110 aa12.58□□□□□ -0.4
SHH-203ENST00000435425 TMEM262E9PQX1 116 aa12.58□□□□□ -0.4
SHH-203ENST00000435425 RIGQ13278 110 aa12.58□□□□□ -0.4
SHH-203ENST00000435425 Q6ZRN7 208 aaPredicted RBP12.58□□□□□ -0.4
SHH-203ENST00000435425 DEFB104AQ8WTQ1 72 aa12.58□□□□□ -0.4
SHH-203ENST00000435425 NIT1Q86X76 327 aa12.57□□□□□ -0.4
SHH-203ENST00000435425 SMIM27A0A1W2PRY6 76 aa12.56□□□□□ -0.4
SHH-203ENST00000435425 KCNIP4Q6PIL6 250 aa12.56□□□□□ -0.4
SHH-203ENST00000435425 NTM-AS1Q6ZSK4 140 aa12.56□□□□□ -0.4
SHH-203ENST00000435425 RPL39LQ96EH5 51 aaKnown RBP12.56□□□□□ -0.4
SHH-203ENST00000435425 CHCHD5Q9BSY4 110 aa12.56□□□□□ -0.4
SHH-203ENST00000435425 FAT2Q9NYQ8 4349 aa12.55□□□□□ -0.4
SHH-203ENST00000435425 A0A087WX48 190 aa12.55□□□□□ -0.4
SHH-203ENST00000435425 TMEM97Q5BJF2 176 aa12.55□□□□□ -0.4
SHH-203ENST00000435425 TMEM191AQ9H0A3 160 aa12.55□□□□□ -0.4
SHH-203ENST00000435425 TRBV25-1A0A075B6N4 114 aa12.53□□□□□ -0.4
SHH-203ENST00000435425 PSCAO43653 123 aa12.53□□□□□ -0.4
SHH-203ENST00000435425 AMN1Q8IY45 258 aa12.53□□□□□ -0.4
SHH-203ENST00000435425 KLK12Q9UKR0 248 aa12.53□□□□□ -0.4
SHH-203ENST00000435425 BIRC6Q9NR09 4857 aa12.53□□□□□ -0.4
SHH-203ENST00000435425 IGHV1-24A0A0C4DH33 117 aa12.52□□□□□ -0.41
SHH-203ENST00000435425 RAB4AP20338 218 aa12.52□□□□□ -0.41
SHH-203ENST00000435425 CAMPP49913 170 aa12.52□□□□□ -0.41
SHH-203ENST00000435425 PNRC1Q12796 327 aaPredicted RBP12.52□□□□□ -0.41
SHH-203ENST00000435425 GAGE6Q13070 117 aa12.52□□□□□ -0.41
SHH-203ENST00000435425 UQCC3Q6UW78 93 aa12.52□□□□□ -0.41
SHH-203ENST00000435425 COMMD7Q86VX2 200 aa12.52□□□□□ -0.41
SHH-203ENST00000435425 RNF185Q96GF1 192 aa12.52□□□□□ -0.41
SHH-203ENST00000435425 PPP1R2P9O14990 202 aa12.51□□□□□ -0.41
SHH-203ENST00000435425 GAS8-AS1O95177 125 aa12.51□□□□□ -0.41
SHH-203ENST00000435425 MRPL54Q6P161 138 aaKnown RBP12.51□□□□□ -0.41
SHH-203ENST00000435425 FRZBQ92765 325 aa12.51□□□□□ -0.41
SHH-203ENST00000435425 F8W036 122 aa12.5□□□□□ -0.41
SHH-203ENST00000435425 LAGE3Q14657 143 aa12.5□□□□□ -0.41
SHH-203ENST00000435425 MPV17L2Q567V2 206 aa12.5□□□□□ -0.41
SHH-203ENST00000435425 ATRAIDQ6UW56 229 aa12.5□□□□□ -0.41
SHH-203ENST00000435425 SPATA12Q7Z6I5 190 aa12.5□□□□□ -0.41
SHH-203ENST00000435425 CHCHD7Q9BUK0 85 aa12.5□□□□□ -0.41
SHH-203ENST00000435425 TRAV8-3A0A0A6YYJ7 113 aa12.49□□□□□ -0.41
SHH-203ENST00000435425 TMEM218A2RU14 115 aa12.49□□□□□ -0.41
SHH-203ENST00000435425 SMKR1H3BMG3 65 aa12.49□□□□□ -0.41
SHH-203ENST00000435425 EREGO14944 169 aa12.49□□□□□ -0.41
SHH-203ENST00000435425 MT-ND4LP03901 98 aa12.49□□□□□ -0.41
SHH-203ENST00000435425 ADCYAP1P18509 176 aa12.49□□□□□ -0.41
SHH-203ENST00000435425 COTL1Q14019 142 aa12.49□□□□□ -0.41
SHH-203ENST00000435425 ELOBQ15370 118 aa12.49□□□□□ -0.41
SHH-203ENST00000435425 IQCJQ1A5X6 159 aa12.49□□□□□ -0.41
SHH-203ENST00000435425 Q8N976 141 aa12.49□□□□□ -0.41
SHH-203ENST00000435425 UBE2WQ96B02 151 aa12.49□□□□□ -0.41
SHH-203ENST00000435425 PKD1P98161 4303 aa12.48□□□□□ -0.41
SHH-203ENST00000435425 NCR2O95944 276 aa12.48□□□□□ -0.41
SHH-203ENST00000435425 ANGP03950 147 aaKnown RBP12.48□□□□□ -0.41
SHH-203ENST00000435425 PKIAP61925 76 aa12.48□□□□□ -0.41
SHH-203ENST00000435425 ANAPC16Q96DE5 110 aa12.48□□□□□ -0.41
SHH-203ENST00000435425 MRAP2Q96G30 205 aa12.48□□□□□ -0.41
SHH-203ENST00000435425 TMEM243Q9BU79 118 aa12.48□□□□□ -0.41
SHH-203ENST00000435425 HECTD4Q9Y4D8 3996 aa12.47□□□□□ -0.41
SHH-203ENST00000435425 A0A087WTM6 91 aa12.47□□□□□ -0.41
SHH-203ENST00000435425 SDHAF1A6NFY7 115 aa12.47□□□□□ -0.41
SHH-203ENST00000435425 AMTP48728 403 aa12.47□□□□□ -0.41
SHH-203ENST00000435425 TM2D2Q9BX73 214 aa12.47□□□□□ -0.41
SHH-203ENST00000435425 ST20Q9HBF5 79 aa12.47□□□□□ -0.41
SHH-203ENST00000435425 A0A1B0GW15 77 aa12.46□□□□□ -0.41
SHH-203ENST00000435425 C16orf90A8MZG2 172 aa12.46□□□□□ -0.41
SHH-203ENST00000435425 PMCHP20382 165 aa12.46□□□□□ -0.41
SHH-203ENST00000435425 FUSP35637 526 aaKnown RBP eCLIP12.46□□□□□ -0.41
SHH-203ENST00000435425 RPS10P46783 165 aaKnown RBP12.46□□□□□ -0.41
SHH-203ENST00000435425 KRTAP10-2P60368 255 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms