RNA–Protein interactions for RNA: ENST00000433888.5

PTPN4-205, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 954 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-205ENST00000433888 CFTRP13569 1480 aa0.62□□□□□ -2.31
PTPN4-205ENST00000433888 ZNF518AQ6AHZ1 1483 aa0.62□□□□□ -2.31
PTPN4-205ENST00000433888 NALCNQ8IZF0 1738 aa0.62□□□□□ -2.31
PTPN4-205ENST00000433888 TRAV13-2A0A0B4J235 113 aa0.62□□□□□ -2.31
PTPN4-205ENST00000433888 TRBV10-3A0A0K0K1G6 114 aa0.62□□□□□ -2.31
PTPN4-205ENST00000433888 RBAKDNA6NC62 111 aa0.62□□□□□ -2.31
PTPN4-205ENST00000433888 EDDM3BP56851 147 aa0.62□□□□□ -2.31
PTPN4-205ENST00000433888 RPL37P61927 97 aaKnown RBP0.62□□□□□ -2.31
PTPN4-205ENST00000433888 C10orf128Q5T292 105 aa0.62□□□□□ -2.31
PTPN4-205ENST00000433888 C9orf153Q5TBE3 101 aa0.62□□□□□ -2.31
PTPN4-205ENST00000433888 Q6AWC8 147 aa0.62□□□□□ -2.31
PTPN4-205ENST00000433888 C10orf99Q6UWK7 81 aa0.62□□□□□ -2.31
PTPN4-205ENST00000433888 NDUFA11Q86Y39 141 aa0.62□□□□□ -2.31
PTPN4-205ENST00000433888 TANC1Q9C0D5 1861 aa0.62□□□□□ -2.31
PTPN4-205ENST00000433888 CASKIN1Q8WXD9 1431 aa0.62□□□□□ -2.31
PTPN4-205ENST00000433888 ROBO1Q9Y6N7 1651 aa0.62□□□□□ -2.31
PTPN4-205ENST00000433888 TNS1Q9HBL0 1735 aaKnown RBP0.61□□□□□ -2.31
PTPN4-205ENST00000433888 A0A096LNT2 108 aa0.61□□□□□ -2.31
PTPN4-205ENST00000433888 APOC4-APOC2K7ER74 178 aa0.61□□□□□ -2.31
PTPN4-205ENST00000433888 IFNA17P01571 189 aa0.61□□□□□ -2.31
PTPN4-205ENST00000433888 IFNGP01579 166 aa0.61□□□□□ -2.31
PTPN4-205ENST00000433888 APOC2P02655 101 aa0.61□□□□□ -2.31
PTPN4-205ENST00000433888 ACYP2P14621 99 aa0.61□□□□□ -2.31
PTPN4-205ENST00000433888 FGF7P21781 194 aa0.61□□□□□ -2.31
PTPN4-205ENST00000433888 SPINK13Q1W4C9 94 aa0.61□□□□□ -2.31
PTPN4-205ENST00000433888 FAM74A4Q5TZK3 123 aa0.61□□□□□ -2.31
PTPN4-205ENST00000433888 TTC9CQ8N5M4 171 aa0.61□□□□□ -2.31
PTPN4-205ENST00000433888 COPS9Q8WXC6 57 aa0.61□□□□□ -2.31
PTPN4-205ENST00000433888 FAM103A1Q9BTL3 118 aaKnown RBP0.61□□□□□ -2.31
PTPN4-205ENST00000433888 LINC00474Q9P2X8 69 aa0.61□□□□□ -2.31
PTPN4-205ENST00000433888 PATJQ8NI35 1801 aa0.61□□□□□ -2.31
PTPN4-205ENST00000433888 NWD2Q9ULI1 1742 aa0.61□□□□□ -2.31
PTPN4-205ENST00000433888 CUL7Q14999 1698 aa0.6□□□□□ -2.31
PTPN4-205ENST00000433888 F2Z2F3 143 aa0.6□□□□□ -2.31
PTPN4-205ENST00000433888 CORTO00230 105 aa0.6□□□□□ -2.31
PTPN4-205ENST00000433888 PPP1R17O96001 155 aa0.6□□□□□ -2.31
PTPN4-205ENST00000433888 TPPP2P59282 170 aa0.6□□□□□ -2.31
PTPN4-205ENST00000433888 ZNF462Q96JM2 2506 aa0.6□□□□□ -2.31
PTPN4-205ENST00000433888 NAIPQ13075 1403 aa0.59□□□□□ -2.31
PTPN4-205ENST00000433888 GVQW2A0A096LPI5 108 aaPredicted RBP0.59□□□□□ -2.31
PTPN4-205ENST00000433888 TRAV1-2A0A0B4J238 106 aa0.59□□□□□ -2.31
PTPN4-205ENST00000433888 ATP6V1G2-DDX39BF2Z307 99 aa0.59□□□□□ -2.31
PTPN4-205ENST00000433888 PPP3R1P63098 170 aa0.59□□□□□ -2.31
PTPN4-205ENST00000433888 CCL8P80075 99 aa0.59□□□□□ -2.31
PTPN4-205ENST00000433888 PPP1R1CQ8WVI7 109 aa0.59□□□□□ -2.31
PTPN4-205ENST00000433888 AQP10Q96PS8 301 aa0.59□□□□□ -2.31
PTPN4-205ENST00000433888 SPAG17Q6Q759 2223 aa0.58□□□□□ -2.32
PTPN4-205ENST00000433888 DAPK1P53355 1430 aa0.58□□□□□ -2.32
PTPN4-205ENST00000433888 NCOA3Q9Y6Q9 1424 aa0.58□□□□□ -2.32
PTPN4-205ENST00000433888 SIX6O95475 246 aa0.58□□□□□ -2.32
PTPN4-205ENST00000433888 PPP3R2Q96LZ3 170 aa0.58□□□□□ -2.32
PTPN4-205ENST00000433888 MAP2P11137 1827 aaKnown RBP0.58□□□□□ -2.32
PTPN4-205ENST00000433888 PSME4Q14997 1843 aa0.58□□□□□ -2.32
PTPN4-205ENST00000433888 DOCK2Q92608 1830 aa0.58□□□□□ -2.32
PTPN4-205ENST00000433888 ZNF236Q9UL36 1845 aa0.58□□□□□ -2.32
PTPN4-205ENST00000433888 F5P12259 2224 aa0.58□□□□□ -2.32
PTPN4-205ENST00000433888 APCP25054 2843 aa0.57□□□□□ -2.32
PTPN4-205ENST00000433888 DOCK11Q5JSL3 2073 aa0.57□□□□□ -2.32
PTPN4-205ENST00000433888 QRICH2Q9H0J4 1663 aa0.57□□□□□ -2.32
PTPN4-205ENST00000433888 IFT140Q96RY7 1462 aa0.57□□□□□ -2.32
PTPN4-205ENST00000433888 BTG2P78543 158 aa0.57□□□□□ -2.32
PTPN4-205ENST00000433888 ZNF818PQ6ZRF7 136 aa0.57□□□□□ -2.32
PTPN4-205ENST00000433888 SVBPQ8N300 66 aa0.57□□□□□ -2.32
PTPN4-205ENST00000433888 TMEM203Q969S6 136 aa0.57□□□□□ -2.32
PTPN4-205ENST00000433888 NPVFQ9HCQ7 196 aa0.57□□□□□ -2.32
PTPN4-205ENST00000433888 KNTC1P50748 2209 aa0.57□□□□□ -2.32
PTPN4-205ENST00000433888 SSC5DA1L4H1 1573 aa0.57□□□□□ -2.32
PTPN4-205ENST00000433888 KTN1Q86UP2 1357 aaKnown RBP0.57□□□□□ -2.32
PTPN4-205ENST00000433888 PRDM2Q13029 1718 aa0.56□□□□□ -2.32
PTPN4-205ENST00000433888 ZMYM4Q5VZL5 1548 aa0.56□□□□□ -2.32
PTPN4-205ENST00000433888 C20orf202A1L168 122 aa0.56□□□□□ -2.32
PTPN4-205ENST00000433888 SNCAP37840 140 aa0.56□□□□□ -2.32
PTPN4-205ENST00000433888 GNG4P50150 75 aa0.56□□□□□ -2.32
PTPN4-205ENST00000433888 FXYD6P3P58550 94 aa0.56□□□□□ -2.32
PTPN4-205ENST00000433888 SPAG11BQ08648 103 aa0.56□□□□□ -2.32
PTPN4-205ENST00000433888 SPAG11AQ6PDA7 123 aa0.56□□□□□ -2.32
PTPN4-205ENST00000433888 SFTA2Q6UW10 78 aa0.56□□□□□ -2.32
PTPN4-205ENST00000433888 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.56□□□□□ -2.32
PTPN4-205ENST00000433888 Q6ZRX8 168 aa0.56□□□□□ -2.32
PTPN4-205ENST00000433888 C12orf57Q99622 126 aa0.56□□□□□ -2.32
PTPN4-205ENST00000433888 WFDC6Q9BQY6 131 aa0.56□□□□□ -2.32
PTPN4-205ENST00000433888 SPANXDQ9BXN6 97 aa0.56□□□□□ -2.32
PTPN4-205ENST00000433888 PEG3Q9GZU2 1588 aa0.56□□□□□ -2.32
PTPN4-205ENST00000433888 CPSF1Q10570 1443 aaKnown RBP0.55□□□□□ -2.32
PTPN4-205ENST00000433888 A2ML1A8K2U0 1454 aa0.55□□□□□ -2.32
PTPN4-205ENST00000433888 MYOM2P54296 1465 aa0.55□□□□□ -2.32
PTPN4-205ENST00000433888 KIAA0100Q14667 2235 aaKnown RBP0.55□□□□□ -2.32
PTPN4-205ENST00000433888 CTXND1A0A1B0GTU2 59 aa0.55□□□□□ -2.32
PTPN4-205ENST00000433888 SPINK7P58062 85 aa0.55□□□□□ -2.32
PTPN4-205ENST00000433888 C12orf73Q69YU5 71 aa0.55□□□□□ -2.32
PTPN4-205ENST00000433888 VMO1Q7Z5L0 202 aa0.55□□□□□ -2.32
PTPN4-205ENST00000433888 C5orf38Q86SI9 138 aa0.55□□□□□ -2.32
PTPN4-205ENST00000433888 FAM213BQ8TBF2 198 aa0.55□□□□□ -2.32
PTPN4-205ENST00000433888 SMIM11BQ8TCY0 68 aa0.55□□□□□ -2.32
PTPN4-205ENST00000433888 PRR15LQ9BU68 103 aa0.55□□□□□ -2.32
PTPN4-205ENST00000433888 DPH3P1Q9H4G8 78 aa0.55□□□□□ -2.32
PTPN4-205ENST00000433888 C10orf95Q9H7T3 257 aa0.55□□□□□ -2.32
PTPN4-205ENST00000433888 IFT172Q9UG01 1749 aa0.55□□□□□ -2.32
PTPN4-205ENST00000433888 SMG6Q86US8 1419 aaKnown RBP0.55□□□□□ -2.32
PTPN4-205ENST00000433888 PIGBOS1A0A0B4J2F0 54 aa0.54□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms