RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 NFE4Q86UQ8 179 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 OR11H1Q8NG94 326 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 OR10J6PQ8NGY7 276 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 OR11H2Q8NH07 326 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 C20orf78Q9BR46 151 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 TRAV12-1A0A0B4J245 112 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 A6NDX4 124 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 NDUFA4O00483 81 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 SCGB2A1O75556 95 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 APOMO95445 188 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 AZU1P20160 251 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 PLNP26678 52 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 RNASE13Q5GAN3 156 aaKnown RBP5.32□□□□□ -1.56
COL28A1-202ENST00000430711 SPATA3Q8NHX4 192 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 SMPXQ9UHP9 88 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 ZNF256Q9Y2P7 627 aaPredicted RBP5.32□□□□□ -1.56
COL28A1-202ENST00000430711 IGHV3-73A0A0B4J1V6 119 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 A0A1B0GWB2 263 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 FAM223BA6NKX1 122 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 KLLNB2CW77 178 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 TSPAN13O95857 204 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 IGHV4-59P01825 116 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 IGHG2P01859 326 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 ELANEP08246 267 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 CD7P09564 240 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 CFHR3Q02985 330 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 SPINK13Q1W4C9 94 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 CEMP1Q6PRD7 247 aaPredicted RBP5.31□□□□□ -1.56
COL28A1-202ENST00000430711 APRG1Q8IVJ8 170 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 FAM223AQ8IWN6 122 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 FAM104AQ969W3 186 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 ADARB2-AS1A8MUL3 147 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 IGLV1-40P01703 118 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 CRIP2P52943 208 aaPredicted RBP5.31□□□□□ -1.56
COL28A1-202ENST00000430711 POLR2KP53803 58 aaKnown RBP5.31□□□□□ -1.56
COL28A1-202ENST00000430711 HIVEP1P15822 2718 aa5.31□□□□□ -1.56
COL28A1-202ENST00000430711 A0A0J9YY99 117 aa5.3□□□□□ -1.56
COL28A1-202ENST00000430711 A8MZ25 164 aa5.3□□□□□ -1.56
COL28A1-202ENST00000430711 F5H697 171 aa5.3□□□□□ -1.56
COL28A1-202ENST00000430711 NXPH4O95158 308 aa5.3□□□□□ -1.56
COL28A1-202ENST00000430711 PSMG4Q5JS54 123 aa5.3□□□□□ -1.56
COL28A1-202ENST00000430711 Q8N1Y9 231 aa5.3□□□□□ -1.56
COL28A1-202ENST00000430711 SONP18583 2426 aaKnown RBP5.3□□□□□ -1.56
COL28A1-202ENST00000430711 SDHAF1A6NFY7 115 aa5.3□□□□□ -1.56
COL28A1-202ENST00000430711 OVOL1O14753 267 aa5.3□□□□□ -1.56
COL28A1-202ENST00000430711 UBE2D1P51668 147 aa5.3□□□□□ -1.56
COL28A1-202ENST00000430711 DEFB136Q30KP8 78 aa5.3□□□□□ -1.56
COL28A1-202ENST00000430711 ORMDL2Q53FV1 153 aa5.3□□□□□ -1.56
COL28A1-202ENST00000430711 Q6ZSV7 163 aa5.3□□□□□ -1.56
COL28A1-202ENST00000430711 POM121L12Q8N7R1 296 aa5.3□□□□□ -1.56
COL28A1-202ENST00000430711 C10orf105Q8TEF2 133 aa5.3□□□□□ -1.56
COL28A1-202ENST00000430711 DUX3Q96PT4 197 aa5.3□□□□□ -1.56
COL28A1-202ENST00000430711 JMJD1CQ15652 2540 aa5.3□□□□□ -1.56
COL28A1-202ENST00000430711 IGHV3-16A0A0C4DH30 117 aa5.29□□□□□ -1.56
COL28A1-202ENST00000430711 SCGB1D4Q6XE38 83 aa5.29□□□□□ -1.56
COL28A1-202ENST00000430711 ZNF418Q8TF45 676 aaPredicted RBP5.29□□□□□ -1.56
COL28A1-202ENST00000430711 CARD19Q96LW7 228 aa5.29□□□□□ -1.56
COL28A1-202ENST00000430711 DAZ1Q9NQZ3 744 aaKnown RBP5.29□□□□□ -1.56
COL28A1-202ENST00000430711 PRRC2AP48634 2157 aaKnown RBP5.29□□□□□ -1.56
COL28A1-202ENST00000430711 GAGE12HA6NDE8 117 aa5.29□□□□□ -1.56
COL28A1-202ENST00000430711 KNCNA6PVL3 124 aa5.29□□□□□ -1.56
COL28A1-202ENST00000430711 CFC1BP0CG36 223 aa5.29□□□□□ -1.56
COL28A1-202ENST00000430711 CFC1P0CG37 223 aa5.29□□□□□ -1.56
COL28A1-202ENST00000430711 HTN1P15515 57 aa5.29□□□□□ -1.56
COL28A1-202ENST00000430711 DEFB112Q30KQ8 113 aa5.29□□□□□ -1.56
COL28A1-202ENST00000430711 TMEM170BQ5T4T1 132 aa5.29□□□□□ -1.56
COL28A1-202ENST00000430711 KIR2DL4Q99706 377 aa5.29□□□□□ -1.56
COL28A1-202ENST00000430711 MRPL16Q9NX20 251 aaKnown RBP5.29□□□□□ -1.56
COL28A1-202ENST00000430711 LENEPQ9Y5L5 61 aa5.29□□□□□ -1.56
COL28A1-202ENST00000430711 WNK1Q9H4A3 2382 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 PDZD2O15018 2839 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 APCP25054 2843 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 LOC107984156A0A0G2JMH3 177 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 M0QY20 66 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 TCL1BO95988 128 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 PSMB2P49721 201 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 SYNJ2BPP57105 145 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 GAGE13Q4V321 117 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 CFAP126Q5VTH2 177 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 Q6ZSN1 163 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 ARL17AQ8IVW1 177 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 A0A0J9YXV3 536 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 RBMY1BA6NDE4 496 aaKnown RBP5.28□□□□□ -1.56
COL28A1-202ENST00000430711 RBMY1EA6NEQ0 496 aaKnown RBP5.28□□□□□ -1.56
COL28A1-202ENST00000430711 HOXA3O43365 443 aaPredicted RBP5.28□□□□□ -1.56
COL28A1-202ENST00000430711 IGHV3-30P01768 117 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 RBMY1DP0C7P1 496 aaKnown RBP5.28□□□□□ -1.56
COL28A1-202ENST00000430711 IGHV3-30-5P0DP03 117 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 PSMB8P28062 276 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 ZNF56Q15929 161 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 TAL2Q16559 108 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 SAMD13Q5VXD3 122 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 FAM159AQ6UWV7 190 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 NDUFA11Q86Y39 141 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 C9orf85Q96MD7 179 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 CCL19Q99731 98 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 MDFIQ99750 246 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 KRTAP4-11Q9BYQ6 195 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 CDIP1Q9H305 208 aa5.28□□□□□ -1.56
COL28A1-202ENST00000430711 NOTCH3Q9UM47 2321 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms