RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 FRAS1Q86XX4 4008 aa8.52□□□□□ -1.05
USP40-205ENST00000430158 MT-ND4LP03901 98 aa8.52□□□□□ -1.05
USP40-205ENST00000430158 SRIP30626 198 aa8.52□□□□□ -1.05
USP40-205ENST00000430158 CCL18P55774 89 aa8.52□□□□□ -1.05
USP40-205ENST00000430158 LCE1DQ5T752 114 aa8.52□□□□□ -1.05
USP40-205ENST00000430158 SUMO4Q6EEV6 95 aa8.52□□□□□ -1.05
USP40-205ENST00000430158 SH2D6Q7Z4S9 175 aa8.52□□□□□ -1.05
USP40-205ENST00000430158 NEXN-AS1Q8NBZ9 246 aa8.52□□□□□ -1.05
USP40-205ENST00000430158 ANAPC16Q96DE5 110 aa8.52□□□□□ -1.05
USP40-205ENST00000430158 A0A1B0GXF2 115 aa8.51□□□□□ -1.05
USP40-205ENST00000430158 GAGE12JA6NER3 117 aa8.51□□□□□ -1.05
USP40-205ENST00000430158 UBE2D3P61077 147 aa8.51□□□□□ -1.05
USP40-205ENST00000430158 UBE2D2P62837 147 aa8.51□□□□□ -1.05
USP40-205ENST00000430158 GAGE1Q13065 139 aa8.51□□□□□ -1.05
USP40-205ENST00000430158 GAGE4Q13068 117 aa8.51□□□□□ -1.05
USP40-205ENST00000430158 GAGE5Q13069 117 aa8.51□□□□□ -1.05
USP40-205ENST00000430158 GAGE13Q4V321 117 aa8.51□□□□□ -1.05
USP40-205ENST00000430158 RNF185Q96GF1 192 aa8.51□□□□□ -1.05
USP40-205ENST00000430158 TMEM191AQ9H0A3 160 aa8.51□□□□□ -1.05
USP40-205ENST00000430158 DNAH17Q9UFH2 4485 aa8.51□□□□□ -1.05
USP40-205ENST00000430158 SMIM17P0DL12 118 aa8.5□□□□□ -1.05
USP40-205ENST00000430158 ZNF56Q15929 161 aa8.5□□□□□ -1.05
USP40-205ENST00000430158 Q6ZR54 194 aa8.5□□□□□ -1.05
USP40-205ENST00000430158 TRBV7-3A0A075B6L6 115 aa8.49□□□□□ -1.05
USP40-205ENST00000430158 F5H697 171 aa8.49□□□□□ -1.05
USP40-205ENST00000430158 MGPP08493 103 aa8.49□□□□□ -1.05
USP40-205ENST00000430158 RIGQ13278 110 aa8.49□□□□□ -1.05
USP40-205ENST00000430158 UBE2DNLQ8IWF7 75 aa8.49□□□□□ -1.05
USP40-205ENST00000430158 GATD1Q8NB37 220 aa8.49□□□□□ -1.05
USP40-205ENST00000430158 ATP6V0E2Q8NHE4 81 aa8.49□□□□□ -1.05
USP40-205ENST00000430158 GTSF1LQ9H1H1 148 aa8.49□□□□□ -1.05
USP40-205ENST00000430158 DNAH2Q9P225 4427 aa8.49□□□□□ -1.05
USP40-205ENST00000430158 C7orf77A4D0Y5 90 aa8.48□□□□□ -1.05
USP40-205ENST00000430158 GAS8-AS1O95177 125 aa8.48□□□□□ -1.05
USP40-205ENST00000430158 RAB4AP20338 218 aa8.48□□□□□ -1.05
USP40-205ENST00000430158 SLC7A5P1Q8MH63 180 aa8.48□□□□□ -1.05
USP40-205ENST00000430158 CLRN3Q8NCR9 226 aa8.48□□□□□ -1.05
USP40-205ENST00000430158 IMMP2LQ96T52 175 aa8.48□□□□□ -1.05
USP40-205ENST00000430158 CTDSP1Q9GZU7 261 aa8.48□□□□□ -1.05
USP40-205ENST00000430158 A0A087WWC5 75 aa8.47□□□□□ -1.05
USP40-205ENST00000430158 TRAV26-2A0A0B4J265 109 aa8.47□□□□□ -1.05
USP40-205ENST00000430158 A0A1B0GW15 77 aa8.47□□□□□ -1.05
USP40-205ENST00000430158 RPL36AP83881 106 aaKnown RBP8.47□□□□□ -1.05
USP40-205ENST00000430158 RASL11AQ6T310 242 aa8.47□□□□□ -1.05
USP40-205ENST00000430158 FRZBQ92765 325 aa8.47□□□□□ -1.05
USP40-205ENST00000430158 RPL36ALQ969Q0 106 aaKnown RBP8.47□□□□□ -1.05
USP40-205ENST00000430158 BORCS7Q96B45 105 aa8.47□□□□□ -1.05
USP40-205ENST00000430158 DNAJC30Q96LL9 226 aa8.47□□□□□ -1.05
USP40-205ENST00000430158 KRTAP1-5Q9BYS1 174 aa8.47□□□□□ -1.05
USP40-205ENST00000430158 Q9H8V8 135 aa8.47□□□□□ -1.05
USP40-205ENST00000430158 TMEM242Q9NWH2 141 aa8.47□□□□□ -1.05
USP40-205ENST00000430158 LELP1Q5T871 98 aa8.46□□□□□ -1.06
USP40-205ENST00000430158 FAM104BQ5XKR9 115 aa8.46□□□□□ -1.06
USP40-205ENST00000430158 MRPL54Q6P161 138 aaKnown RBP8.46□□□□□ -1.06
USP40-205ENST00000430158 ATP5L2Q7Z4Y8 100 aa8.46□□□□□ -1.06
USP40-205ENST00000430158 WFDC10BQ8IUB3 73 aa8.46□□□□□ -1.06
USP40-205ENST00000430158 AMN1Q8IY45 258 aa8.46□□□□□ -1.06
USP40-205ENST00000430158 NIT2Q9NQR4 276 aa8.46□□□□□ -1.06
USP40-205ENST00000430158 IGLV2-18A0A075B6J9 118 aa8.45□□□□□ -1.06
USP40-205ENST00000430158 H7C1H1 209 aa8.45□□□□□ -1.06
USP40-205ENST00000430158 CAMPP49913 170 aa8.45□□□□□ -1.06
USP40-205ENST00000430158 HBBP68871 147 aa8.45□□□□□ -1.06
USP40-205ENST00000430158 RHEBQ15382 184 aa8.45□□□□□ -1.06
USP40-205ENST00000430158 NTM-AS1Q6ZSK4 140 aa8.45□□□□□ -1.06
USP40-205ENST00000430158 SMIM15Q7Z3B0 74 aa8.45□□□□□ -1.06
USP40-205ENST00000430158 RPL39LQ96EH5 51 aaKnown RBP8.45□□□□□ -1.06
USP40-205ENST00000430158 TRBV6-5A0A0K0K1A5 114 aa8.44□□□□□ -1.06
USP40-205ENST00000430158 NBDYA0A0U1RRE5 68 aa8.44□□□□□ -1.06
USP40-205ENST00000430158 SIVA1O15304 175 aa8.44□□□□□ -1.06
USP40-205ENST00000430158 APOC3P02656 99 aa8.44□□□□□ -1.06
USP40-205ENST00000430158 DNAH10OSP0CZ25 163 aa8.44□□□□□ -1.06
USP40-205ENST00000430158 RPS10P46783 165 aaKnown RBP8.44□□□□□ -1.06
USP40-205ENST00000430158 FAT2Q9NYQ8 4349 aa8.43□□□□□ -1.06
USP40-205ENST00000430158 IGHV3-38A0A0C4DH36 116 aa8.43□□□□□ -1.06
USP40-205ENST00000430158 MRPL51Q4U2R6 128 aaKnown RBP8.43□□□□□ -1.06
USP40-205ENST00000430158 DAZ4Q86SG3 579 aaKnown RBP8.43□□□□□ -1.06
USP40-205ENST00000430158 NRACQ8N912 160 aa8.43□□□□□ -1.06
USP40-205ENST00000430158 MRAP2Q96G30 205 aa8.43□□□□□ -1.06
USP40-205ENST00000430158 BTF3L4Q96K17 158 aa8.43□□□□□ -1.06
USP40-205ENST00000430158 DAZ3Q9NR90 486 aaKnown RBP8.43□□□□□ -1.06
USP40-205ENST00000430158 TNFRSF18Q9Y5U5 241 aa8.43□□□□□ -1.06
USP40-205ENST00000430158 TRAV9-1A0A075B6T8 112 aa8.42□□□□□ -1.06
USP40-205ENST00000430158 M0R2N4 97 aa8.42□□□□□ -1.06
USP40-205ENST00000430158 S100A8P05109 93 aa8.42□□□□□ -1.06
USP40-205ENST00000430158 LINC01556Q5JQF7 62 aa8.42□□□□□ -1.06
USP40-205ENST00000430158 ATRAIDQ6UW56 229 aa8.42□□□□□ -1.06
USP40-205ENST00000430158 SVBPQ8N300 66 aa8.42□□□□□ -1.06
USP40-205ENST00000430158 TRBV6-8A0A0A6YYG3 113 aa8.41□□□□□ -1.06
USP40-205ENST00000430158 SMKR1H3BMG3 65 aa8.41□□□□□ -1.06
USP40-205ENST00000430158 POLR2KP53803 58 aaKnown RBP8.41□□□□□ -1.06
USP40-205ENST00000430158 NDUFA5Q16718 116 aa8.41□□□□□ -1.06
USP40-205ENST00000430158 RPS10P5Q9NQ39 176 aa8.41□□□□□ -1.06
USP40-205ENST00000430158 TRBV24-1A0A075B6N3 115 aa8.4□□□□□ -1.06
USP40-205ENST00000430158 TRAV8-6A0A0B4J262 113 aa8.4□□□□□ -1.06
USP40-205ENST00000430158 RTL8CO15255 209 aa8.4□□□□□ -1.06
USP40-205ENST00000430158 SNAPINO95295 136 aa8.4□□□□□ -1.06
USP40-205ENST00000430158 NCR2O95944 276 aa8.4□□□□□ -1.06
USP40-205ENST00000430158 IQCJQ1A5X6 159 aa8.4□□□□□ -1.06
USP40-205ENST00000430158 OR10J3Q5JRS4 329 aa8.4□□□□□ -1.06
USP40-205ENST00000430158 TMEM136Q6ZRR5 245 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms