RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 ZNF563Q8TA94 476 aa2.24□□□□□ -2.05
CCDC88A-206ENST00000430086 PMCHL2Q9BQD1 86 aa2.24□□□□□ -2.05
CCDC88A-206ENST00000430086 CCDC18Q5T9S5 1454 aa2.24□□□□□ -2.05
CCDC88A-206ENST00000430086 CACNA1GO43497 2377 aa2.24□□□□□ -2.05
CCDC88A-206ENST00000430086 ROBO1Q9Y6N7 1651 aa2.24□□□□□ -2.05
CCDC88A-206ENST00000430086 CASKIN1Q8WXD9 1431 aa2.24□□□□□ -2.05
CCDC88A-206ENST00000430086 SPAG17Q6Q759 2223 aa2.23□□□□□ -2.05
CCDC88A-206ENST00000430086 COL5A3P25940 1745 aaPredicted RBP2.23□□□□□ -2.05
CCDC88A-206ENST00000430086 ANKRD26Q9UPS8 1709 aa2.23□□□□□ -2.05
CCDC88A-206ENST00000430086 IGKV2-40A0A087WW87 121 aaPredicted RBP2.23□□□□□ -2.05
CCDC88A-206ENST00000430086 LOC101927531A0A1B0GV80 90 aa2.23□□□□□ -2.05
CCDC88A-206ENST00000430086 IGKV2D-40P01614 121 aaPredicted RBP2.23□□□□□ -2.05
CCDC88A-206ENST00000430086 KRTAP13-4Q3LI77 160 aa2.23□□□□□ -2.05
CCDC88A-206ENST00000430086 XAF1Q6GPH4 301 aa2.23□□□□□ -2.05
CCDC88A-206ENST00000430086 DEFB132Q7Z7B7 95 aa2.23□□□□□ -2.05
CCDC88A-206ENST00000430086 C20orf197Q8N268 126 aa2.23□□□□□ -2.05
CCDC88A-206ENST00000430086 MGST2Q99735 147 aa2.23□□□□□ -2.05
CCDC88A-206ENST00000430086 FAIMQ9NVQ4 179 aa2.23□□□□□ -2.05
CCDC88A-206ENST00000430086 BET1LQ9NYM9 111 aa2.23□□□□□ -2.05
CCDC88A-206ENST00000430086 CC2D2AQ9P2K1 1620 aa2.23□□□□□ -2.05
CCDC88A-206ENST00000430086 ABCC5O15440 1437 aa2.23□□□□□ -2.05
CCDC88A-206ENST00000430086 CHD3Q12873 2000 aaKnown RBP2.22□□□□□ -2.05
CCDC88A-206ENST00000430086 CRYM-AS1A6NIL9 109 aa2.22□□□□□ -2.05
CCDC88A-206ENST00000430086 PCNX2A6NKB5 2137 aa2.22□□□□□ -2.05
CCDC88A-206ENST00000430086 ATOX1O00244 68 aa2.22□□□□□ -2.05
CCDC88A-206ENST00000430086 GYPAP02724 150 aa2.22□□□□□ -2.05
CCDC88A-206ENST00000430086 IGLC1P0CG04 106 aa2.22□□□□□ -2.05
CCDC88A-206ENST00000430086 FXYD4P59646 89 aa2.22□□□□□ -2.05
CCDC88A-206ENST00000430086 SEC11AP67812 179 aa2.22□□□□□ -2.05
CCDC88A-206ENST00000430086 PTPRDP23468 1912 aa2.22□□□□□ -2.05
CCDC88A-206ENST00000430086 TNS1Q9HBL0 1735 aaKnown RBP2.22□□□□□ -2.05
CCDC88A-206ENST00000430086 CR1P17927 2039 aa2.22□□□□□ -2.05
CCDC88A-206ENST00000430086 hADV29S1A0JD25 119 aa2.21□□□□□ -2.06
CCDC88A-206ENST00000430086 NDUFC1O43677 76 aa2.21□□□□□ -2.06
CCDC88A-206ENST00000430086 ELOF1P60002 83 aaKnown RBP2.21□□□□□ -2.06
CCDC88A-206ENST00000430086 UQCR10Q9UDW1 63 aa2.21□□□□□ -2.06
CCDC88A-206ENST00000430086 NWD2Q9ULI1 1742 aa2.21□□□□□ -2.06
CCDC88A-206ENST00000430086 ZNF142P52746 1687 aaPredicted RBP2.21□□□□□ -2.06
CCDC88A-206ENST00000430086 ARAP2Q8WZ64 1704 aa2.2□□□□□ -2.06
CCDC88A-206ENST00000430086 BLMP54132 1417 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-206ENST00000430086 TRBV7-3A0A075B6L6 115 aa2.2□□□□□ -2.06
CCDC88A-206ENST00000430086 IGKV2-29A2NJV5 120 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-206ENST00000430086 CCL3L1P16619 93 aa2.2□□□□□ -2.06
CCDC88A-206ENST00000430086 FXYD3Q14802 87 aa2.2□□□□□ -2.06
CCDC88A-206ENST00000430086 COX7B2Q8TF08 81 aa2.2□□□□□ -2.06
CCDC88A-206ENST00000430086 LINC00474Q9P2X8 69 aa2.2□□□□□ -2.06
CCDC88A-206ENST00000430086 MYO18AQ92614 2054 aaKnown RBP2.2□□□□□ -2.06
CCDC88A-206ENST00000430086 MUC22E2RYF6 1773 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-206ENST00000430086 ZNF56Q15929 161 aa2.19□□□□□ -2.06
CCDC88A-206ENST00000430086 MANBALQ9NQG1 85 aa2.19□□□□□ -2.06
CCDC88A-206ENST00000430086 KIAA0100Q14667 2235 aaKnown RBP2.19□□□□□ -2.06
CCDC88A-206ENST00000430086 ANKRD36BQ8N2N9 1353 aa2.19□□□□□ -2.06
CCDC88A-206ENST00000430086 GOLGA3Q08378 1498 aa2.19□□□□□ -2.06
CCDC88A-206ENST00000430086 TNRC6AQ8NDV7 1962 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-206ENST00000430086 ARFGEF3Q5TH69 2177 aa2.18□□□□□ -2.06
CCDC88A-206ENST00000430086 FXYD1O00168 92 aa2.18□□□□□ -2.06
CCDC88A-206ENST00000430086 Q6ZQY7 126 aa2.18□□□□□ -2.06
CCDC88A-206ENST00000430086 LCN9Q8WX39 176 aa2.18□□□□□ -2.06
CCDC88A-206ENST00000430086 OBSCN-AS1Q96MR7 158 aa2.18□□□□□ -2.06
CCDC88A-206ENST00000430086 PRO1933Q9H354 126 aa2.18□□□□□ -2.06
CCDC88A-206ENST00000430086 PLEKHH2Q8IVE3 1493 aa2.18□□□□□ -2.06
CCDC88A-206ENST00000430086 CTTNBP2Q8WZ74 1663 aa2.18□□□□□ -2.06
CCDC88A-206ENST00000430086 KIAA1551Q9HCM1 1747 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 ZGRF1Q86YA3 2104 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 NBDYA0A0U1RRE5 68 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 LOC285095A0A1B0GVY8 99 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 SFT2D2O95562 160 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 COX6CP09669 75 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 CAV3P56539 151 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 C5orf56Q8N8D9 126 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 FAM213BQ8TBF2 198 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 TSLPQ969D9 159 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 FAM167A-AS1Q96KT0 104 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 DYNLRB1Q9NP97 96 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 LENEPQ9Y5L5 61 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 V9GYV3 84 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 MED14O60244 1454 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 GBF1Q92538 1859 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 ABCA3Q99758 1704 aa2.17□□□□□ -2.06
CCDC88A-206ENST00000430086 TOPAZ1Q8N9V7 1692 aa2.16□□□□□ -2.06
CCDC88A-206ENST00000430086 BAHCC1Q9P281 2608 aa2.16□□□□□ -2.06
CCDC88A-206ENST00000430086 PXDNQ92626 1479 aa2.16□□□□□ -2.06
CCDC88A-206ENST00000430086 FAUP35544 74 aaKnown RBP2.16□□□□□ -2.06
CCDC88A-206ENST00000430086 EDDM3BP56851 147 aa2.16□□□□□ -2.06
CCDC88A-206ENST00000430086 PCOTHQ58A44 107 aa2.16□□□□□ -2.06
CCDC88A-206ENST00000430086 PYY3Q5JQD4 70 aa2.16□□□□□ -2.06
CCDC88A-206ENST00000430086 TRGV9Q99603 122 aa2.16□□□□□ -2.06
CCDC88A-206ENST00000430086 NPVFQ9HCQ7 196 aa2.16□□□□□ -2.06
CCDC88A-206ENST00000430086 PRO1854Q9UHT4 67 aa2.16□□□□□ -2.06
CCDC88A-206ENST00000430086 INTS1Q8N201 2190 aaKnown RBP2.16□□□□□ -2.06
CCDC88A-206ENST00000430086 ABCC3O15438 1527 aa2.16□□□□□ -2.06
CCDC88A-206ENST00000430086 PRDM15P57071 1507 aaPredicted RBP2.16□□□□□ -2.06
CCDC88A-206ENST00000430086 DOCK1Q14185 1865 aa2.16□□□□□ -2.06
CCDC88A-206ENST00000430086 DLEC1Q9Y238 1755 aa2.15□□□□□ -2.06
CCDC88A-206ENST00000430086 TRBV7-7A0A0K0K1E9 115 aa2.15□□□□□ -2.07
CCDC88A-206ENST00000430086 CHKB-CPT1BH3BT56 60 aa2.15□□□□□ -2.07
CCDC88A-206ENST00000430086 PPP1R17O96001 155 aa2.15□□□□□ -2.07
CCDC88A-206ENST00000430086 KLKP1Q107X0 134 aa2.15□□□□□ -2.07
CCDC88A-206ENST00000430086 SERP2Q8N6R1 65 aa2.15□□□□□ -2.07
CCDC88A-206ENST00000430086 LRRC37A3O60309 1634 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms