RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 PKIAP61925 76 aa9.44□□□□□ -0.9
SDC1-204ENST00000429035 GAGE6Q13070 117 aa9.44□□□□□ -0.9
SDC1-204ENST00000429035 CXCL1P09341 107 aa9.43□□□□□ -0.9
SDC1-204ENST00000429035 RPL37AP61513 92 aaKnown RBP9.43□□□□□ -0.9
SDC1-204ENST00000429035 AP1S3Q96PC3 154 aa9.43□□□□□ -0.9
SDC1-204ENST00000429035 TPPP3Q9BW30 176 aa9.43□□□□□ -0.9
SDC1-204ENST00000429035 SNAI2O43623 268 aa9.42□□□□□ -0.9
SDC1-204ENST00000429035 S100A9P06702 114 aaKnown RBP9.42□□□□□ -0.9
SDC1-204ENST00000429035 KCNRGQ8N5I3 272 aa9.42□□□□□ -0.9
SDC1-204ENST00000429035 DERL1Q9BUN8 251 aa9.42□□□□□ -0.9
SDC1-204ENST00000429035 TRBV25-1A0A075B6N4 114 aa9.41□□□□□ -0.9
SDC1-204ENST00000429035 MIAQ16674 131 aa9.41□□□□□ -0.9
SDC1-204ENST00000429035 RGS21Q2M5E4 152 aa9.41□□□□□ -0.9
SDC1-204ENST00000429035 TMEM97Q5BJF2 176 aa9.41□□□□□ -0.9
SDC1-204ENST00000429035 OR5AL1P0C617 328 aa9.4□□□□□ -0.9
SDC1-204ENST00000429035 KRTAP10-4P60372 401 aaPredicted RBP9.4□□□□□ -0.9
SDC1-204ENST00000429035 RBX1P62877 108 aa9.4□□□□□ -0.9
SDC1-204ENST00000429035 NTM-AS1Q6ZSK4 140 aa9.4□□□□□ -0.9
SDC1-204ENST00000429035 LINC00269Q8N2A0 174 aa9.4□□□□□ -0.9
SDC1-204ENST00000429035 LRP1Q07954 4544 aaKnown RBP9.4□□□□□ -0.91
SDC1-204ENST00000429035 IGLV10-54A0A075B6I4 117 aa9.39□□□□□ -0.91
SDC1-204ENST00000429035 KANTRA0A1W2PQU2 76 aa9.39□□□□□ -0.91
SDC1-204ENST00000429035 UMAD1C9J7I0 102 aa9.39□□□□□ -0.91
SDC1-204ENST00000429035 PRSS1P07477 247 aa9.39□□□□□ -0.91
SDC1-204ENST00000429035 H2AFB1P0C5Y9 115 aa9.39□□□□□ -0.91
SDC1-204ENST00000429035 GZMBP10144 247 aa9.39□□□□□ -0.91
SDC1-204ENST00000429035 MBD3L1Q8WWY6 194 aa9.39□□□□□ -0.91
SDC1-204ENST00000429035 MLST8Q9BVC4 326 aa9.39□□□□□ -0.91
SDC1-204ENST00000429035 IGHV1-24A0A0C4DH33 117 aa9.38□□□□□ -0.91
SDC1-204ENST00000429035 RPL35P42766 123 aaKnown RBP9.38□□□□□ -0.91
SDC1-204ENST00000429035 ZNF345Q14585 488 aa9.38□□□□□ -0.91
SDC1-204ENST00000429035 GNG13Q9P2W3 67 aa9.38□□□□□ -0.91
SDC1-204ENST00000429035 PKHD1L1Q86WI1 4243 aa9.37□□□□□ -0.91
SDC1-204ENST00000429035 FAT3Q8TDW7 4589 aa9.37□□□□□ -0.91
SDC1-204ENST00000429035 BCL2L11O43521 198 aa9.37□□□□□ -0.91
SDC1-204ENST00000429035 OXTP01178 125 aa9.37□□□□□ -0.91
SDC1-204ENST00000429035 CENPWQ5EE01 88 aa9.37□□□□□ -0.91
SDC1-204ENST00000429035 SERTAD4-AS1Q5TG53 156 aa9.37□□□□□ -0.91
SDC1-204ENST00000429035 TMUB2Q71RG4 321 aa9.37□□□□□ -0.91
SDC1-204ENST00000429035 FER1L6-AS1Q8NA97 138 aa9.37□□□□□ -0.91
SDC1-204ENST00000429035 SSBP4Q9BWG4 385 aaPredicted RBP9.37□□□□□ -0.91
SDC1-204ENST00000429035 VAX2Q9UIW0 290 aa9.37□□□□□ -0.91
SDC1-204ENST00000429035 NKX2-5P52952 324 aaPredicted RBP9.36□□□□□ -0.91
SDC1-204ENST00000429035 REG3AQ06141 175 aa9.36□□□□□ -0.91
SDC1-204ENST00000429035 SUMO4Q6EEV6 95 aa9.36□□□□□ -0.91
SDC1-204ENST00000429035 OR2D3Q8NGH3 330 aa9.36□□□□□ -0.91
SDC1-204ENST00000429035 DAZAP1Q96EP5 407 aaKnown RBP9.36□□□□□ -0.91
SDC1-204ENST00000429035 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.36□□□□□ -0.91
SDC1-204ENST00000429035 hDV102S1A0JD36 115 aa9.35□□□□□ -0.91
SDC1-204ENST00000429035 H7C1H1 209 aa9.35□□□□□ -0.91
SDC1-204ENST00000429035 DGAT2L7PQ6IED9 249 aa9.35□□□□□ -0.91
SDC1-204ENST00000429035 C9orf163Q8N9P6 203 aa9.35□□□□□ -0.91
SDC1-204ENST00000429035 MANBALQ9NQG1 85 aa9.35□□□□□ -0.91
SDC1-204ENST00000429035 PRR34Q9NV39 138 aa9.35□□□□□ -0.91
SDC1-204ENST00000429035 KIF25-AS1Q9Y6Z4 181 aa9.35□□□□□ -0.91
SDC1-204ENST00000429035 A0A0D9SG52 128 aa9.34□□□□□ -0.91
SDC1-204ENST00000429035 RAB5CP51148 216 aa9.34□□□□□ -0.91
SDC1-204ENST00000429035 HNRNPA3P51991 378 aaKnown RBP9.34□□□□□ -0.91
SDC1-204ENST00000429035 EIF5AP63241 154 aaKnown RBP9.34□□□□□ -0.91
SDC1-204ENST00000429035 IQCJQ1A5X6 159 aa9.34□□□□□ -0.91
SDC1-204ENST00000429035 TMEM243Q9BU79 118 aa9.34□□□□□ -0.91
SDC1-204ENST00000429035 PLA2G2DQ9UNK4 145 aa9.34□□□□□ -0.91
SDC1-204ENST00000429035 PANO1I0J062 215 aa9.33□□□□□ -0.92
SDC1-204ENST00000429035 M0QY20 66 aa9.33□□□□□ -0.92
SDC1-204ENST00000429035 UBE2L6O14933 153 aa9.33□□□□□ -0.92
SDC1-204ENST00000429035 RPS20P60866 119 aaKnown RBP9.33□□□□□ -0.92
SDC1-204ENST00000429035 CACNG7P62955 275 aa9.33□□□□□ -0.92
SDC1-204ENST00000429035 C20orf203Q8NBC4 194 aa9.33□□□□□ -0.92
SDC1-204ENST00000429035 C11orf52Q96A22 123 aa9.33□□□□□ -0.92
SDC1-204ENST00000429035 AP5S1Q9NUS5 200 aa9.33□□□□□ -0.92
SDC1-204ENST00000429035 IGLC6P0CF74 106 aa9.32□□□□□ -0.92
SDC1-204ENST00000429035 GNG4P50150 75 aa9.32□□□□□ -0.92
SDC1-204ENST00000429035 WDR73Q6P4I2 378 aa9.32□□□□□ -0.92
SDC1-204ENST00000429035 KRTAP26-1Q6PEX3 210 aa9.32□□□□□ -0.92
SDC1-204ENST00000429035 IGLV4-60A0A075B6I1 120 aa9.31□□□□□ -0.92
SDC1-204ENST00000429035 IGKV3OR2-268A0A0C4DH90 116 aa9.31□□□□□ -0.92
SDC1-204ENST00000429035 XKRY2A2RUG3 117 aa9.31□□□□□ -0.92
SDC1-204ENST00000429035 RAB19A4D1S5 217 aa9.31□□□□□ -0.92
SDC1-204ENST00000429035 HMSDA8MTL9 139 aa9.31□□□□□ -0.92
SDC1-204ENST00000429035 P01737 135 aa9.31□□□□□ -0.92
SDC1-204ENST00000429035 TRGC1P0CF51 173 aa9.31□□□□□ -0.92
SDC1-204ENST00000429035 SULT1A2P50226 295 aa9.31□□□□□ -0.92
SDC1-204ENST00000429035 CCL20P78556 96 aa9.31□□□□□ -0.92
SDC1-204ENST00000429035 RASL11AQ6T310 242 aa9.31□□□□□ -0.92
SDC1-204ENST00000429035 CLRN3Q8NCR9 226 aa9.31□□□□□ -0.92
SDC1-204ENST00000429035 DPH3Q96FX2 82 aa9.31□□□□□ -0.92
SDC1-204ENST00000429035 AMTP48728 403 aa9.3□□□□□ -0.92
SDC1-204ENST00000429035 GFRA4Q9GZZ7 299 aa9.3□□□□□ -0.92
SDC1-204ENST00000429035 DPH3P1Q9H4G8 78 aa9.3□□□□□ -0.92
SDC1-204ENST00000429035 IGHV3-64A0A075B6Q5 118 aa9.29□□□□□ -0.92
SDC1-204ENST00000429035 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.29□□□□□ -0.92
SDC1-204ENST00000429035 TRAV8-4A0A0B4J246 113 aa9.29□□□□□ -0.92
SDC1-204ENST00000429035 C19orf71A6NCJ1 209 aa9.29□□□□□ -0.92
SDC1-204ENST00000429035 TEX46H3BTG2 121 aa9.29□□□□□ -0.92
SDC1-204ENST00000429035 IFNA1P01562 189 aa9.29□□□□□ -0.92
SDC1-204ENST00000429035 CHTF8P0CG12 524 aa9.29□□□□□ -0.92
SDC1-204ENST00000429035 COTL1Q14019 142 aa9.29□□□□□ -0.92
SDC1-204ENST00000429035 LYZL1Q6UWQ5 148 aa9.29□□□□□ -0.92
SDC1-204ENST00000429035 SDIM1Q6ZPB5 146 aa9.29□□□□□ -0.92
SDC1-204ENST00000429035 CNBPP62633 177 aaKnown RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms