RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 TCRBV4S1A1TA0A5B7 111 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 EFCAB10A6NFE3 127 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 HBDP02042 147 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 EVI2AP22794 236 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 ROMO1P60602 79 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 LSM3P62310 102 aaKnown RBP1.66□□□□□ -2.14
USP40-204ENST00000427947 NEDD8Q15843 81 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 Q1T7F1 81 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 RPS19BP1Q86WX3 136 aaKnown RBP1.66□□□□□ -2.14
USP40-204ENST00000427947 Q8N814 137 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 NAT14Q8WUY8 206 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 CLEC2BQ92478 149 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 DIRC1Q969H9 104 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 LPAR5Q9H1C0 372 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 TPT1P8Q9HAU6 139 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 IBTKQ9P2D0 1353 aaPredicted RBP1.66□□□□□ -2.14
USP40-204ENST00000427947 MRC1P22897 1456 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 SSC5DA1L4H1 1573 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 ZNF831Q5JPB2 1677 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 NUP210Q8TEM1 1887 aaPredicted RBP1.66□□□□□ -2.14
USP40-204ENST00000427947 ARHGAP32A7KAX9 2087 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 TRRAPQ9Y4A5 3859 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 HEATR5AQ86XA9 2040 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 AFDNP55196 1824 aaKnown RBP1.66□□□□□ -2.14
USP40-204ENST00000427947 NRXN2Q9P2S2 1712 aa1.66□□□□□ -2.14
USP40-204ENST00000427947 DYNC1H1Q14204 4646 aaKnown RBP1.65□□□□□ -2.14
USP40-204ENST00000427947 MALRD1Q5VYJ5 2156 aa1.65□□□□□ -2.14
USP40-204ENST00000427947 MYO5AQ9Y4I1 1855 aaKnown RBP1.65□□□□□ -2.14
USP40-204ENST00000427947 TRAV12-1A0A0B4J245 112 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 LOC107984156A0A0G2JMH3 177 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 C2orf70A6NJV1 201 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 C5orf67F2Z3F1 127 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 IGLV1-51P01701 117 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 SLC25A5P05141 298 aaKnown RBP1.65□□□□□ -2.15
USP40-204ENST00000427947 KDELR1P24390 212 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 LELP1Q5T871 98 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 C2orf82Q6UX34 121 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 TMEM14EPQ6UXP3 125 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 FP248Q71RG6 208 aaPredicted RBP1.65□□□□□ -2.15
USP40-204ENST00000427947 GKN2Q86XP6 184 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 ARL17AQ8IVW1 177 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 MMGT1Q8N4V1 131 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 OR4S1Q8NGB4 309 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 OR5AK2Q8NH90 309 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 TP53RKQ96S44 253 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 CST11Q9H112 138 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 NUP98P52948 1817 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 ARFGEF1Q9Y6D6 1849 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 MUC19Q7Z5P9 8384 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 ANKRD31Q8N7Z5 1873 aa1.65□□□□□ -2.15
USP40-204ENST00000427947 KDM3BQ7LBC6 1761 aa1.64□□□□□ -2.15
USP40-204ENST00000427947 TRAV10A0A0B4J240 114 aa1.64□□□□□ -2.15
USP40-204ENST00000427947 LOC107986453A0A1B0GWG9 222 aa1.64□□□□□ -2.15
USP40-204ENST00000427947 UQCRQO14949 82 aa1.64□□□□□ -2.15
USP40-204ENST00000427947 ERC2-IT1O76042 136 aa1.64□□□□□ -2.15
USP40-204ENST00000427947 GPX1P07203 203 aa1.64□□□□□ -2.15
USP40-204ENST00000427947 PCBD1P61457 104 aa1.64□□□□□ -2.15
USP40-204ENST00000427947 NCS1P62166 190 aa1.64□□□□□ -2.15
USP40-204ENST00000427947 SNRPD3P62318 126 aaKnown RBP1.64□□□□□ -2.15
USP40-204ENST00000427947 BLCAPP62952 87 aa1.64□□□□□ -2.15
USP40-204ENST00000427947 GLYATL3Q5SZD4 288 aa1.64□□□□□ -2.15
USP40-204ENST00000427947 RPL13AP3Q6NVV1 102 aa1.64□□□□□ -2.15
USP40-204ENST00000427947 CTAGE3PQ8IX95 158 aa1.64□□□□□ -2.15
USP40-204ENST00000427947 SCN8AQ9UQD0 1980 aa1.64□□□□□ -2.15
USP40-204ENST00000427947 FER1L6Q2WGJ9 1857 aa1.64□□□□□ -2.15
USP40-204ENST00000427947 LRP1Q07954 4544 aaKnown RBP1.64□□□□□ -2.15
USP40-204ENST00000427947 TRAV27A0A087WT01 109 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 A0A096LPI6 279 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 C3orf85A0A1B0GTC6 90 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 C9orf170A2RU37 121 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 FAM25AB3EWG3 89 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 FAM25CB3EWG5 89 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 FAM25GB3EWG6 89 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 SULT1C4O75897 302 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 TRACP01848 142 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 IGLC6P0CF74 106 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 SAA1P0DJI8 122 aaPredicted RBP1.63□□□□□ -2.15
USP40-204ENST00000427947 LINC00694P0DN24 101 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 SLC25A4P12235 298 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 HIST1H1BP16401 226 aaKnown RBP1.63□□□□□ -2.15
USP40-204ENST00000427947 DSCR4P56555 118 aaPredicted RBP1.63□□□□□ -2.15
USP40-204ENST00000427947 COPZ1P61923 177 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 DIAPH2-AS1Q14236 149 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 HAGHLQ6PII5 290 aaPredicted RBP1.63□□□□□ -2.15
USP40-204ENST00000427947 TEX261Q6UWH6 196 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 COA5Q86WW8 74 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 Q96M85 177 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 COMMD3Q9UBI1 195 aa1.63□□□□□ -2.15
USP40-204ENST00000427947 LRP2P98164 4655 aa1.62□□□□□ -2.15
USP40-204ENST00000427947 RFX7Q2KHR2 1363 aa1.62□□□□□ -2.15
USP40-204ENST00000427947 TRBV6-8A0A0A6YYG3 113 aa1.62□□□□□ -2.15
USP40-204ENST00000427947 E7EUB6 86 aa1.62□□□□□ -2.15
USP40-204ENST00000427947 M0R129 80 aa1.62□□□□□ -2.15
USP40-204ENST00000427947 CKS2P33552 79 aa1.62□□□□□ -2.15
USP40-204ENST00000427947 AKR1D1P51857 326 aa1.62□□□□□ -2.15
USP40-204ENST00000427947 RPS25P62851 125 aaKnown RBP1.62□□□□□ -2.15
USP40-204ENST00000427947 CLLU1Q5K131 121 aa1.62□□□□□ -2.15
USP40-204ENST00000427947 ARPINQ7Z6K5 226 aa1.62□□□□□ -2.15
USP40-204ENST00000427947 ERG28Q9UKR5 140 aa1.62□□□□□ -2.15
USP40-204ENST00000427947 COL4A2P08572 1712 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms