RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TRAV12-1A0A0B4J245 112 aa7.46□□□□□ -1.22
USP54-205ENST00000424265 IGHV3-48P01763 117 aa7.46□□□□□ -1.22
USP54-205ENST00000424265 POM121L12Q8N7R1 296 aa7.46□□□□□ -1.22
USP54-205ENST00000424265 LAMTOR3Q9UHA4 124 aa7.46□□□□□ -1.22
USP54-205ENST00000424265 U3KQK5 164 aa7.46□□□□□ -1.22
USP54-205ENST00000424265 S100A4P26447 101 aaKnown RBP7.45□□□□□ -1.22
USP54-205ENST00000424265 KRTAP10-9P60411 292 aa7.45□□□□□ -1.22
USP54-205ENST00000424265 PDE6HQ13956 83 aa7.45□□□□□ -1.22
USP54-205ENST00000424265 SDIM1Q6ZPB5 146 aa7.45□□□□□ -1.22
USP54-205ENST00000424265 DOPEY1Q5JWR5 2465 aa7.45□□□□□ -1.22
USP54-205ENST00000424265 ARFGEF3Q5TH69 2177 aa7.45□□□□□ -1.22
USP54-205ENST00000424265 SPANXN1Q5VSR9 72 aa7.45□□□□□ -1.22
USP54-205ENST00000424265 FAM167A-AS1Q96KT0 104 aa7.45□□□□□ -1.22
USP54-205ENST00000424265 NAV2Q8IVL1 2488 aa7.45□□□□□ -1.22
USP54-205ENST00000424265 IGHV3-33P01772 117 aa7.45□□□□□ -1.22
USP54-205ENST00000424265 ZNF462Q96JM2 2506 aa7.44□□□□□ -1.22
USP54-205ENST00000424265 ZNF561-AS1K7EIQ3 104 aa7.44□□□□□ -1.22
USP54-205ENST00000424265 TIMM17BO60830 172 aa7.44□□□□□ -1.22
USP54-205ENST00000424265 IGF1P05019 195 aa7.44□□□□□ -1.22
USP54-205ENST00000424265 C2orf48Q96LS8 159 aa7.44□□□□□ -1.22
USP54-205ENST00000424265 IGLV11-55A0A075B6I3 123 aa7.44□□□□□ -1.22
USP54-205ENST00000424265 G3V318 75 aa7.44□□□□□ -1.22
USP54-205ENST00000424265 SH2D1AO60880 128 aa7.44□□□□□ -1.22
USP54-205ENST00000424265 S4R3C0 116 aa7.44□□□□□ -1.22
USP54-205ENST00000424265 H7C423 109 aa7.44□□□□□ -1.22
USP54-205ENST00000424265 C20orf197Q8N268 126 aa7.44□□□□□ -1.22
USP54-205ENST00000424265 SLC25A29Q8N8R3 303 aa7.44□□□□□ -1.22
USP54-205ENST00000424265 CLPSL1A2RUU4 121 aa7.44□□□□□ -1.22
USP54-205ENST00000424265 CLEC2BQ92478 149 aa7.44□□□□□ -1.22
USP54-205ENST00000424265 UBE2E2Q96LR5 201 aa7.44□□□□□ -1.22
USP54-205ENST00000424265 PROP1O75360 226 aa7.43□□□□□ -1.22
USP54-205ENST00000424265 Q8N6K4 173 aa7.43□□□□□ -1.22
USP54-205ENST00000424265 MPLKIPQ8TAP9 179 aa7.43□□□□□ -1.22
USP54-205ENST00000424265 TRBV19A0A075B6N1 114 aa7.43□□□□□ -1.22
USP54-205ENST00000424265 DNAJC9-AS1A6NH13 148 aa7.43□□□□□ -1.22
USP54-205ENST00000424265 SPG11Q96JI7 2443 aa7.43□□□□□ -1.22
USP54-205ENST00000424265 GHRHP01286 108 aa7.43□□□□□ -1.22
USP54-205ENST00000424265 C4orf48Q5BLP8 95 aa7.43□□□□□ -1.22
USP54-205ENST00000424265 HIST2H2BCQ6DN03 193 aa7.43□□□□□ -1.22
USP54-205ENST00000424265 STHQ8IWL8 128 aa7.43□□□□□ -1.22
USP54-205ENST00000424265 TMEM75Q8N9X5 138 aa7.43□□□□□ -1.22
USP54-205ENST00000424265 ZNF580Q9UK33 172 aa7.43□□□□□ -1.22
USP54-205ENST00000424265 IGHV3-30P01768 117 aa7.42□□□□□ -1.22
USP54-205ENST00000424265 IGHV3-30-5P0DP03 117 aa7.42□□□□□ -1.22
USP54-205ENST00000424265 MUSTN1Q8IVN3 82 aa7.42□□□□□ -1.22
USP54-205ENST00000424265 IGKV3-7A0A075B6H7 116 aa7.42□□□□□ -1.22
USP54-205ENST00000424265 IGHV3-35A0A0C4DH35 117 aa7.42□□□□□ -1.22
USP54-205ENST00000424265 TRBV30A0A0K0K1B3 111 aa7.42□□□□□ -1.22
USP54-205ENST00000424265 TEX22C9J3V5 150 aa7.42□□□□□ -1.22
USP54-205ENST00000424265 USP17L23D6RBM5 183 aa7.42□□□□□ -1.22
USP54-205ENST00000424265 RNASE1P07998 156 aaKnown RBP7.42□□□□□ -1.22
USP54-205ENST00000424265 CREBBPQ92793 2442 aa7.42□□□□□ -1.22
USP54-205ENST00000424265 MGPP08493 103 aa7.42□□□□□ -1.22
USP54-205ENST00000424265 MLANAQ16655 118 aa7.42□□□□□ -1.22
USP54-205ENST00000424265 TMEM14CQ9P0S9 112 aa7.42□□□□□ -1.22
USP54-205ENST00000424265 A0A0J9YY99 117 aa7.42□□□□□ -1.22
USP54-205ENST00000424265 TRIAP1O43715 76 aa7.42□□□□□ -1.22
USP54-205ENST00000424265 LY6G6DO95868 133 aa7.42□□□□□ -1.22
USP54-205ENST00000424265 CD164Q04900 197 aa7.42□□□□□ -1.22
USP54-205ENST00000424265 SPRY2O43597 315 aa7.41□□□□□ -1.22
USP54-205ENST00000424265 DAD1P61803 113 aa7.41□□□□□ -1.22
USP54-205ENST00000424265 MRPS36P82909 103 aaKnown RBP7.41□□□□□ -1.22
USP54-205ENST00000424265 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.41□□□□□ -1.223e-6■■■■□ 21.5
USP54-205ENST00000424265 CGB1A6NKQ9 187 aa7.41□□□□□ -1.22
USP54-205ENST00000424265 I3L2K1 104 aa7.41□□□□□ -1.22
USP54-205ENST00000424265 PSMB8P28062 276 aa7.41□□□□□ -1.22
USP54-205ENST00000424265 EPG5Q9HCE0 2579 aa7.41□□□□□ -1.22
USP54-205ENST00000424265 DOPEY2Q9Y3R5 2298 aa7.4□□□□□ -1.22
USP54-205ENST00000424265 HILS1P60008 231 aa7.4□□□□□ -1.22
USP54-205ENST00000424265 PRB4P10163 310 aaPredicted RBP7.4□□□□□ -1.22
USP54-205ENST00000424265 IGHV3-64A0A075B6Q5 118 aa7.4□□□□□ -1.23
USP54-205ENST00000424265 C8orf49Q96NF6 230 aa7.4□□□□□ -1.23
USP54-205ENST00000424265 RHPN1-AS1Q9BWJ2 59 aa7.4□□□□□ -1.23
USP54-205ENST00000424265 MYO18BQ8IUG5 2567 aa7.4□□□□□ -1.23
USP54-205ENST00000424265 BLCAPP62952 87 aa7.4□□□□□ -1.23
USP54-205ENST00000424265 FANCD2OSQ96PS1 177 aa7.4□□□□□ -1.23
USP54-205ENST00000424265 K7EMT4 169 aa7.39□□□□□ -1.23
USP54-205ENST00000424265 BRWD1-AS2P59051 145 aa7.39□□□□□ -1.23
USP54-205ENST00000424265 DYNAPQ8N1N2 210 aa7.39□□□□□ -1.23
USP54-205ENST00000424265 TMEM263Q8WUH6 116 aaKnown RBP7.39□□□□□ -1.23
USP54-205ENST00000424265 RITA1Q96K30 269 aa7.39□□□□□ -1.23
USP54-205ENST00000424265 H3BRN7 92 aa7.39□□□□□ -1.23
USP54-205ENST00000424265 DAZ4Q86SG3 579 aaKnown RBP7.39□□□□□ -1.23
USP54-205ENST00000424265 K7EIM0 57 aa7.39□□□□□ -1.23
USP54-205ENST00000424265 ERCC8Q13216 396 aa7.39□□□□□ -1.23
USP54-205ENST00000424265 GATA1P15976 413 aaPredicted RBP7.39□□□□□ -1.23
USP54-205ENST00000424265 C4orf3Q8WVX3 66 aa7.39□□□□□ -1.23
USP54-205ENST00000424265 PRR25Q96S07 402 aa7.39□□□□□ -1.23
USP54-205ENST00000424265 HIVEP2P31629 2446 aa7.39□□□□□ -1.23
USP54-205ENST00000424265 BAALC-AS2P0C853 105 aa7.38□□□□□ -1.23
USP54-205ENST00000424265 C2orf66Q6UXQ4 117 aa7.38□□□□□ -1.23
USP54-205ENST00000424265 IGHV7-4-1A0A0J9YVY3 117 aa7.38□□□□□ -1.23
USP54-205ENST00000424265 GPHB5Q86YW7 130 aa7.38□□□□□ -1.23
USP54-205ENST00000424265 AGRNO00468 2067 aa7.37□□□□□ -1.23
USP54-205ENST00000424265 IGHV3OR16-13A0A075B7E8 117 aa7.37□□□□□ -1.23
USP54-205ENST00000424265 IGHV3-49A0A0A0MS15 119 aa7.37□□□□□ -1.23
USP54-205ENST00000424265 IGHV3-74A0A0B4J1X5 117 aa7.37□□□□□ -1.23
USP54-205ENST00000424265 APRG1Q8IVJ8 170 aa7.37□□□□□ -1.23
USP54-205ENST00000424265 MRPL53Q96EL3 112 aaKnown RBP7.37□□□□□ -1.23
USP54-205ENST00000424265 VSIG2Q96IQ7 327 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms