RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ABCA2Q9BZC7 2435 aa5.32□□□□□ -1.56
SCN1A-204ENST00000423058 TRBV10-1A0A0K0K1A3 114 aa5.32□□□□□ -1.56
SCN1A-204ENST00000423058 TAX1BP3O14907 124 aa5.32□□□□□ -1.56
SCN1A-204ENST00000423058 UFSP1Q6NVU6 142 aa5.32□□□□□ -1.56
SCN1A-204ENST00000423058 IGHV7-81A0A0B4J1V7 117 aa5.32□□□□□ -1.56
SCN1A-204ENST00000423058 H7C423 109 aa5.32□□□□□ -1.56
SCN1A-204ENST00000423058 UBE2D3P61077 147 aa5.31□□□□□ -1.56
SCN1A-204ENST00000423058 ESM1Q9NQ30 184 aa5.31□□□□□ -1.56
SCN1A-204ENST00000423058 SPANXB1Q9NS25 103 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-204ENST00000423058 SPTSSBQ8NFR3 76 aa5.31□□□□□ -1.56
SCN1A-204ENST00000423058 ZFP36P26651 326 aaKnown RBP5.31□□□□□ -1.56
SCN1A-204ENST00000423058 COA6Q5JTJ3 125 aaKnown RBP5.31□□□□□ -1.56
SCN1A-204ENST00000423058 LRRC75A-AS1Q8N1F1 130 aa5.31□□□□□ -1.56
SCN1A-204ENST00000423058 RPL39LQ96EH5 51 aaKnown RBP5.31□□□□□ -1.56
SCN1A-204ENST00000423058 DKK2Q9UBU2 259 aa5.31□□□□□ -1.56
SCN1A-204ENST00000423058 POLR3KQ9Y2Y1 108 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-204ENST00000423058 DNAJC9-AS1A6NH13 148 aa5.31□□□□□ -1.56
SCN1A-204ENST00000423058 Q8N1Y9 231 aa5.31□□□□□ -1.56
SCN1A-204ENST00000423058 K7ERJ3 54 aa5.31□□□□□ -1.56
SCN1A-204ENST00000423058 COL4A6Q14031 1691 aa5.3□□□□□ -1.56
SCN1A-204ENST00000423058 IGLV11-55A0A075B6I3 123 aa5.3□□□□□ -1.56
SCN1A-204ENST00000423058 BLCAPP62952 87 aa5.3□□□□□ -1.56
SCN1A-204ENST00000423058 NTN5Q8WTR8 489 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-204ENST00000423058 ZNF581Q9P0T4 197 aa5.3□□□□□ -1.56
SCN1A-204ENST00000423058 COL5A1P20908 1838 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-204ENST00000423058 IGKV2-24A0A0C4DH68 120 aa5.3□□□□□ -1.56
SCN1A-204ENST00000423058 PRB2P02812 416 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-204ENST00000423058 DEFB131BA0A096LNP1 70 aa5.3□□□□□ -1.56
SCN1A-204ENST00000423058 NPSP0C0P6 89 aa5.3□□□□□ -1.56
SCN1A-204ENST00000423058 SS18L2Q9UHA2 77 aa5.3□□□□□ -1.56
SCN1A-204ENST00000423058 PTPRBP23467 1997 aa5.3□□□□□ -1.56
SCN1A-204ENST00000423058 LRP4O75096 1905 aa5.3□□□□□ -1.56
SCN1A-204ENST00000423058 LGALS9O00182 355 aa5.3□□□□□ -1.56
SCN1A-204ENST00000423058 SERP1Q9Y6X1 66 aa5.3□□□□□ -1.56
SCN1A-204ENST00000423058 BPY2O14599 106 aa5.3□□□□□ -1.56
SCN1A-204ENST00000423058 LY6G6EA0A0G2JKS1 128 aa5.29□□□□□ -1.56
SCN1A-204ENST00000423058 U3KQA8 63 aa5.29□□□□□ -1.56
SCN1A-204ENST00000423058 DIAPH2-AS1Q14236 149 aa5.29□□□□□ -1.56
SCN1A-204ENST00000423058 LINC00474Q9P2X8 69 aa5.29□□□□□ -1.56
SCN1A-204ENST00000423058 LOXL1Q08397 574 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-204ENST00000423058 IGFL2Q6UWQ7 119 aa5.29□□□□□ -1.56
SCN1A-204ENST00000423058 TOMM6Q96B49 74 aa5.29□□□□□ -1.56
SCN1A-204ENST00000423058 PROK2Q9HC23 129 aa5.29□□□□□ -1.56
SCN1A-204ENST00000423058 IGKV1-17P01599 117 aa5.29□□□□□ -1.56
SCN1A-204ENST00000423058 FAM110AQ9BQ89 295 aa5.29□□□□□ -1.56
SCN1A-204ENST00000423058 TRAV26-1A0A087WT03 109 aa5.29□□□□□ -1.56
SCN1A-204ENST00000423058 DEFB4AO15263 64 aa5.29□□□□□ -1.56
SCN1A-204ENST00000423058 BRK1Q8WUW1 75 aa5.29□□□□□ -1.56
SCN1A-204ENST00000423058 PLA2G5P39877 138 aa5.29□□□□□ -1.56
SCN1A-204ENST00000423058 IGKV3D-7A0A0C4DH55 119 aa5.28□□□□□ -1.56
SCN1A-204ENST00000423058 Q8N9W7 124 aa5.28□□□□□ -1.56
SCN1A-204ENST00000423058 HIGD2AQ9BW72 106 aa5.28□□□□□ -1.56
SCN1A-204ENST00000423058 C3orf22Q8N5N4 141 aa5.28□□□□□ -1.56
SCN1A-204ENST00000423058 I3L2K1 104 aa5.28□□□□□ -1.56
SCN1A-204ENST00000423058 MIFP14174 115 aa5.28□□□□□ -1.56
SCN1A-204ENST00000423058 IGLL1P15814 213 aa5.28□□□□□ -1.56
SCN1A-204ENST00000423058 LTBP2Q14767 1821 aa5.28□□□□□ -1.56
SCN1A-204ENST00000423058 GRNP28799 593 aaKnown RBP5.28□□□□□ -1.56
SCN1A-204ENST00000423058 ARTNQ5T4W7 220 aa5.28□□□□□ -1.56
SCN1A-204ENST00000423058 TRBV6-1A0A0K0K1D8 114 aa5.28□□□□□ -1.56
SCN1A-204ENST00000423058 C11orf86A6NJI1 115 aa5.28□□□□□ -1.56
SCN1A-204ENST00000423058 FAM19A1Q7Z5A9 133 aa5.28□□□□□ -1.56
SCN1A-204ENST00000423058 REG3AQ06141 175 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 ODF1Q14990 250 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 CTSZQ9UBR2 303 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 LECT2O14960 151 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 ADORA2A-AS1P86434 159 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 MIR7-3HGQ8N6C7 128 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 HIGD1BQ9P298 99 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 TRAV10A0A0B4J240 114 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 ATP5EP56381 51 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-204ENST00000423058 IGKV2D-26A0A0A0MRZ7 120 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 LINC00322Q6ZN03 302 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-204ENST00000423058 LYPD6BQ8NI32 183 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 ZNF747Q9BV97 191 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 WI2-2373I1.2A0A1W2PRP0 233 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 K7EIM0 57 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 P0DMU3 169 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 FAM231AP0DMU4 169 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 FAM231CP0DMU5 169 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 V9GYY9 64 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 COL4A4P53420 1690 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-204ENST00000423058 ADAMTS20P59510 1910 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 TCL1BO95988 128 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 CTSGP08311 255 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 ODF3Q96PU9 254 aa5.27□□□□□ -1.57
SCN1A-204ENST00000423058 IGKV1D-37A0A075B6S9 117 aa5.26□□□□□ -1.57
SCN1A-204ENST00000423058 WIPF3A6NGB9 483 aa5.26□□□□□ -1.57
SCN1A-204ENST00000423058 J3KT08 172 aa5.26□□□□□ -1.57
SCN1A-204ENST00000423058 LINC00269Q8N2A0 174 aa5.26□□□□□ -1.57
SCN1A-204ENST00000423058 MAP6D1Q9H9H5 199 aa5.26□□□□□ -1.57
SCN1A-204ENST00000423058 FAM236AA0A1B0GUQ0 79 aa5.26□□□□□ -1.57
SCN1A-204ENST00000423058 FAM236BA0A1B0GV22 79 aa5.26□□□□□ -1.57
SCN1A-204ENST00000423058 GATA1P15976 413 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-204ENST00000423058 FOXI1Q12951 378 aa5.26□□□□□ -1.57
SCN1A-204ENST00000423058 CCDC168Q8NDH2 2452 aa5.26□□□□□ -1.57
SCN1A-204ENST00000423058 SPATA12Q7Z6I5 190 aa5.25□□□□□ -1.57
SCN1A-204ENST00000423058 ZFAND2AQ8N6M9 145 aa5.25□□□□□ -1.57
SCN1A-204ENST00000423058 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-204ENST00000423058 MDFICQ9P1T7 246 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 147.6 ms