RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 ITPR1Q14643 2758 aa8.17□□□□□ -1.1
LIMS1-207ENST00000422797 IGLV4-3A0A075B6K6 122 aa8.17□□□□□ -1.1
LIMS1-207ENST00000422797 EMP1P54849 157 aa8.17□□□□□ -1.1
LIMS1-207ENST00000422797 DEFB1P60022 68 aa8.17□□□□□ -1.1
LIMS1-207ENST00000422797 LY6EQ16553 131 aa8.17□□□□□ -1.1
LIMS1-207ENST00000422797 FAM74A4Q5TZK3 123 aa8.17□□□□□ -1.1
LIMS1-207ENST00000422797 BRD3OSQ6XYD6 125 aa8.17□□□□□ -1.1
LIMS1-207ENST00000422797 SPANXDQ9BXN6 97 aa8.17□□□□□ -1.1
LIMS1-207ENST00000422797 JPT2Q9H910 190 aa8.17□□□□□ -1.1
LIMS1-207ENST00000422797 SPANXCQ9NY87 97 aa8.17□□□□□ -1.1
LIMS1-207ENST00000422797 IGKV3-7A0A075B6H7 116 aa8.16□□□□□ -1.1
LIMS1-207ENST00000422797 IGHV3OR16-10A0A075B7F0 116 aa8.16□□□□□ -1.1
LIMS1-207ENST00000422797 TIMM17BO60830 172 aa8.16□□□□□ -1.1
LIMS1-207ENST00000422797 MT-ATP8P03928 68 aa8.16□□□□□ -1.1
LIMS1-207ENST00000422797 COX6CP09669 75 aa8.16□□□□□ -1.1
LIMS1-207ENST00000422797 PSMB8P28062 276 aa8.16□□□□□ -1.1
LIMS1-207ENST00000422797 XGP55808 180 aa8.16□□□□□ -1.1
LIMS1-207ENST00000422797 MRPS36P82909 103 aaKnown RBP8.16□□□□□ -1.1
LIMS1-207ENST00000422797 MRPL23Q16540 153 aaKnown RBP8.16□□□□□ -1.1
LIMS1-207ENST00000422797 ZFAND6Q6FIF0 208 aa8.16□□□□□ -1.1
LIMS1-207ENST00000422797 Q8N1Y9 231 aa8.16□□□□□ -1.1
LIMS1-207ENST00000422797 TIMM21Q9BVV7 248 aa8.16□□□□□ -1.1
LIMS1-207ENST00000422797 WNK2Q9Y3S1 2297 aa8.16□□□□□ -1.1
LIMS1-207ENST00000422797 TRAV2A0A0B4J234 112 aa8.15□□□□□ -1.1
LIMS1-207ENST00000422797 A0A0J9YXY3 114 aa8.15□□□□□ -1.1
LIMS1-207ENST00000422797 TRBV10-2A0A0K0K1G8 114 aa8.15□□□□□ -1.1
LIMS1-207ENST00000422797 C9JAW5 83 aa8.15□□□□□ -1.1
LIMS1-207ENST00000422797 MSMBP08118 114 aa8.15□□□□□ -1.1
LIMS1-207ENST00000422797 IFITM1P13164 125 aa8.15□□□□□ -1.1
LIMS1-207ENST00000422797 SRD5A1P18405 259 aa8.15□□□□□ -1.1
LIMS1-207ENST00000422797 DSCR9P59020 149 aa8.15□□□□□ -1.1
LIMS1-207ENST00000422797 Q1RN00 199 aa8.15□□□□□ -1.1
LIMS1-207ENST00000422797 LINC01620Q4KN68 170 aa8.15□□□□□ -1.1
LIMS1-207ENST00000422797 Q6Q795 121 aa8.15□□□□□ -1.1
LIMS1-207ENST00000422797 MUSTN1Q8IVN3 82 aa8.15□□□□□ -1.1
LIMS1-207ENST00000422797 TEX29Q8N6K0 151 aa8.15□□□□□ -1.1
LIMS1-207ENST00000422797 IGSF10Q6WRI0 2623 aa8.15□□□□□ -1.11
LIMS1-207ENST00000422797 IGHV4-61A0A0C4DH41 118 aa8.14□□□□□ -1.11
LIMS1-207ENST00000422797 TINCRA0A1B0GVN0 87 aa8.14□□□□□ -1.11
LIMS1-207ENST00000422797 H3BT86 120 aa8.14□□□□□ -1.11
LIMS1-207ENST00000422797 IGHV4-38-2P0DP08 117 aa8.14□□□□□ -1.11
LIMS1-207ENST00000422797 CD28P10747 220 aa8.14□□□□□ -1.11
LIMS1-207ENST00000422797 SFTA2Q6UW10 78 aa8.14□□□□□ -1.11
LIMS1-207ENST00000422797 COPS9Q8WXC6 57 aa8.14□□□□□ -1.11
LIMS1-207ENST00000422797 DMXL2Q8TDJ6 3036 aa8.14□□□□□ -1.11
LIMS1-207ENST00000422797 AKAP13Q12802 2813 aa8.14□□□□□ -1.11
LIMS1-207ENST00000422797 ABCA4P78363 2273 aa8.14□□□□□ -1.11
LIMS1-207ENST00000422797 IGHV1-58A0A0C4DH39 117 aa8.13□□□□□ -1.11
LIMS1-207ENST00000422797 BLCAPP62952 87 aa8.13□□□□□ -1.11
LIMS1-207ENST00000422797 DNAJC30Q96LL9 226 aa8.13□□□□□ -1.11
LIMS1-207ENST00000422797 CCL19Q99731 98 aa8.13□□□□□ -1.11
LIMS1-207ENST00000422797 TLN1Q9Y490 2541 aaKnown RBP8.13□□□□□ -1.11
LIMS1-207ENST00000422797 A0A0J9YXV3 536 aa8.13□□□□□ -1.11
LIMS1-207ENST00000422797 A8MTW9 85 aa8.13□□□□□ -1.11
LIMS1-207ENST00000422797 B4DSR2 109 aa8.13□□□□□ -1.11
LIMS1-207ENST00000422797 SNCGO76070 127 aa8.13□□□□□ -1.11
LIMS1-207ENST00000422797 ELANEP08246 267 aa8.13□□□□□ -1.11
LIMS1-207ENST00000422797 IGHV3-30-3P0DP02 117 aa8.13□□□□□ -1.11
LIMS1-207ENST00000422797 FHL3Q13643 280 aa8.13□□□□□ -1.11
LIMS1-207ENST00000422797 MIAQ16674 131 aa8.13□□□□□ -1.11
LIMS1-207ENST00000422797 RAX2Q96IS3 184 aa8.13□□□□□ -1.11
LIMS1-207ENST00000422797 CITED1Q99966 193 aa8.13□□□□□ -1.11
LIMS1-207ENST00000422797 LINC00467Q9BRT7 94 aa8.13□□□□□ -1.11
LIMS1-207ENST00000422797 TNFRSF18Q9Y5U5 241 aa8.13□□□□□ -1.11
LIMS1-207ENST00000422797 NAV2Q8IVL1 2488 aa8.12□□□□□ -1.11
LIMS1-207ENST00000422797 PTPRQQ9UMZ3 2332 aa8.12□□□□□ -1.11
LIMS1-207ENST00000422797 FAM240AA0A1B0GVK7 77 aa8.12□□□□□ -1.11
LIMS1-207ENST00000422797 ANAPC13Q9BS18 74 aa8.12□□□□□ -1.11
LIMS1-207ENST00000422797 MUC4Q99102 2169 aa8.12□□□□□ -1.11
LIMS1-207ENST00000422797 H3BMM0 161 aa8.11□□□□□ -1.11
LIMS1-207ENST00000422797 J3QLI3 93 aa8.11□□□□□ -1.11
LIMS1-207ENST00000422797 ZNF415Q09FC8 603 aa8.11□□□□□ -1.11
LIMS1-207ENST00000422797 UBE2WQ96B02 151 aa8.11□□□□□ -1.11
LIMS1-207ENST00000422797 NDUFA12Q9UI09 145 aa8.11□□□□□ -1.11
LIMS1-207ENST00000422797 TRAV26-1A0A087WT03 109 aa8.1□□□□□ -1.11
LIMS1-207ENST00000422797 TRAV8-4A0A0B4J246 113 aa8.1□□□□□ -1.11
LIMS1-207ENST00000422797 WIPF1O43516 503 aa8.1□□□□□ -1.11
LIMS1-207ENST00000422797 GAGE2BQ13066 116 aa8.1□□□□□ -1.11
LIMS1-207ENST00000422797 SPINK13Q1W4C9 94 aa8.1□□□□□ -1.11
LIMS1-207ENST00000422797 GAGE2EQ4V326 116 aa8.1□□□□□ -1.11
LIMS1-207ENST00000422797 VSIG2Q96IQ7 327 aa8.1□□□□□ -1.11
LIMS1-207ENST00000422797 LITAFQ99732 161 aa8.1□□□□□ -1.11
LIMS1-207ENST00000422797 GAGE2DQ9UEU5 116 aa8.1□□□□□ -1.11
LIMS1-207ENST00000422797 ICOSQ9Y6W8 199 aa8.1□□□□□ -1.11
LIMS1-207ENST00000422797 SMG1Q96Q15 3661 aaKnown RBP8.1□□□□□ -1.11
LIMS1-207ENST00000422797 MGAQ8IWI9 3026 aa8.09□□□□□ -1.11
LIMS1-207ENST00000422797 TRAV12-2A0A075B6T6 113 aa8.09□□□□□ -1.11
LIMS1-207ENST00000422797 TIRAPP58753 221 aa8.09□□□□□ -1.11
LIMS1-207ENST00000422797 NTN5Q8WTR8 489 aaPredicted RBP8.09□□□□□ -1.11
LIMS1-207ENST00000422797 SPXQ9BT56 116 aa8.09□□□□□ -1.11
LIMS1-207ENST00000422797 PPDPFQ9H3Y8 114 aa8.09□□□□□ -1.11
LIMS1-207ENST00000422797 PRORYQ9H606 182 aa8.09□□□□□ -1.11
LIMS1-207ENST00000422797 BOD1L1Q8NFC6 3051 aa8.09□□□□□ -1.11
LIMS1-207ENST00000422797 TRIAP1O43715 76 aa8.08□□□□□ -1.12
LIMS1-207ENST00000422797 EIF4EBP3O60516 100 aaPredicted RBP8.08□□□□□ -1.12
LIMS1-207ENST00000422797 ATP5J2P56134 94 aa8.08□□□□□ -1.12
LIMS1-207ENST00000422797 CIRBPQ14011 172 aaKnown RBP8.08□□□□□ -1.12
LIMS1-207ENST00000422797 UBE2E2Q96LR5 201 aa8.08□□□□□ -1.12
LIMS1-207ENST00000422797 BBC3Q96PG8 261 aaPredicted RBP8.08□□□□□ -1.12
LIMS1-207ENST00000422797 OPRPNQ99935 248 aaPredicted RBP8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms