RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 NBEAQ8NFP9 2946 aa7.09□□□□□ -1.27
COL28A1-201ENST00000399429 IGHV3-16A0A0C4DH30 117 aa7.09□□□□□ -1.28
COL28A1-201ENST00000399429 F5H768 121 aa7.09□□□□□ -1.28
COL28A1-201ENST00000399429 SRSF2Q01130 221 aaKnown RBP7.09□□□□□ -1.28
COL28A1-201ENST00000399429 HRCT1Q6UXD1 115 aa7.09□□□□□ -1.28
COL28A1-201ENST00000399429 FAM110DQ8TAY7 271 aaPredicted RBP7.09□□□□□ -1.28
COL28A1-201ENST00000399429 MRAPQ8TCY5 172 aa7.09□□□□□ -1.28
COL28A1-201ENST00000399429 DOPEY1Q5JWR5 2465 aa7.08□□□□□ -1.28
COL28A1-201ENST00000399429 COL5A1P20908 1838 aaPredicted RBP7.08□□□□□ -1.28
COL28A1-201ENST00000399429 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.08□□□□□ -1.28
COL28A1-201ENST00000399429 IGKV2-29A2NJV5 120 aaPredicted RBP7.08□□□□□ -1.28
COL28A1-201ENST00000399429 RBM3P98179 157 aaKnown RBP7.08□□□□□ -1.28
COL28A1-201ENST00000399429 NSUN5P1Q3KNT7 163 aa7.08□□□□□ -1.28
COL28A1-201ENST00000399429 S100A7L2Q5SY68 101 aa7.08□□□□□ -1.28
COL28A1-201ENST00000399429 RNF152Q8N8N0 203 aa7.08□□□□□ -1.28
COL28A1-201ENST00000399429 TMEM263Q8WUH6 116 aaKnown RBP7.08□□□□□ -1.28
COL28A1-201ENST00000399429 SMAD5-AS1Q9Y6J3 95 aa7.08□□□□□ -1.28
COL28A1-201ENST00000399429 HOXB4P17483 251 aaPredicted RBP7.07□□□□□ -1.28
COL28A1-201ENST00000399429 TSPEAR-AS2P59090 65 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 HAMPP81172 84 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 Q6ZSV7 163 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 DSCR8Q96T75 97 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 ATP5G1P05496 136 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 NHLRC4P0CG21 123 aaPredicted RBP7.07□□□□□ -1.28
COL28A1-201ENST00000399429 PFN2P35080 140 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 ODF3Q96PU9 254 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 DKK4Q9UBT3 224 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 A0A0G2JNJ9 132 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 A8MZ25 164 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 COX7CP15954 63 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 C9orf47Q6ZRZ4 202 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 ZNRF2Q8NHG8 242 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 C10orf105Q8TEF2 133 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 KAAG1Q9UBP8 84 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 Q9UFV3 132 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 CUL9Q8IWT3 2517 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 NXPH4O95158 308 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 PRB1P04280 392 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 CNFNQ9BYD5 112 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 C14orf132Q9NPU4 83 aa7.07□□□□□ -1.28
COL28A1-201ENST00000399429 IGHV7-4-1A0A0J9YVY3 117 aa7.06□□□□□ -1.28
COL28A1-201ENST00000399429 NRGNQ92686 78 aa7.06□□□□□ -1.28
COL28A1-201ENST00000399429 LENEPQ9Y5L5 61 aa7.06□□□□□ -1.28
COL28A1-201ENST00000399429 LRRC75A-AS1Q8N1F1 130 aa7.06□□□□□ -1.28
COL28A1-201ENST00000399429 LAMTOR3Q9UHA4 124 aa7.06□□□□□ -1.28
COL28A1-201ENST00000399429 IGLV2-18A0A075B6J9 118 aa7.06□□□□□ -1.28
COL28A1-201ENST00000399429 CITED2Q99967 270 aaPredicted RBP7.06□□□□□ -1.28
COL28A1-201ENST00000399429 FAM215AQ9Y5M1 114 aa7.06□□□□□ -1.28
COL28A1-201ENST00000399429 TECTAO75443 2155 aa7.05□□□□□ -1.28
COL28A1-201ENST00000399429 IGHV3-53P01767 116 aa7.05□□□□□ -1.28
COL28A1-201ENST00000399429 OVOL2Q9BRP0 275 aa7.05□□□□□ -1.28
COL28A1-201ENST00000399429 UBL5Q9BZL1 73 aa7.05□□□□□ -1.28
COL28A1-201ENST00000399429 IGHV7-81A0A0B4J1V7 117 aa7.05□□□□□ -1.28
COL28A1-201ENST00000399429 TMEM223A0PJW6 202 aa7.05□□□□□ -1.28
COL28A1-201ENST00000399429 MIAQ16674 131 aa7.05□□□□□ -1.28
COL28A1-201ENST00000399429 ITLN2Q8WWU7 325 aaPredicted RBP7.05□□□□□ -1.28
COL28A1-201ENST00000399429 IMUPQ9GZP8 106 aa7.05□□□□□ -1.28
COL28A1-201ENST00000399429 SAA4P35542 130 aa7.05□□□□□ -1.28
COL28A1-201ENST00000399429 C20orf197Q8N268 126 aa7.05□□□□□ -1.28
COL28A1-201ENST00000399429 MRPL53Q96EL3 112 aaKnown RBP7.05□□□□□ -1.28
COL28A1-201ENST00000399429 SPEGQ15772 3267 aa7.05□□□□□ -1.28
COL28A1-201ENST00000399429 MYO9AB2RTY4 2548 aa7.05□□□□□ -1.28
COL28A1-201ENST00000399429 TRAV23DV6A0A075B6W5 121 aa7.04□□□□□ -1.28
COL28A1-201ENST00000399429 IGHV1OR15-1A0A075B7D0 117 aa7.04□□□□□ -1.28
COL28A1-201ENST00000399429 IGHV1-58A0A0C4DH39 117 aa7.04□□□□□ -1.28
COL28A1-201ENST00000399429 ZNF415Q09FC8 603 aa7.04□□□□□ -1.28
COL28A1-201ENST00000399429 C20orf203Q8NBC4 194 aa7.04□□□□□ -1.28
COL28A1-201ENST00000399429 MINOS1Q5TGZ0 78 aa7.04□□□□□ -1.28
COL28A1-201ENST00000399429 MSRB2Q9Y3D2 182 aa7.04□□□□□ -1.28
COL28A1-201ENST00000399429 MINOS1-NBL1R4GNA1 71 aa7.04□□□□□ -1.28
COL28A1-201ENST00000399429 CELSR3Q9NYQ7 3312 aa7.04□□□□□ -1.28
COL28A1-201ENST00000399429 TRIOO75962 3097 aa7.04□□□□□ -1.28
COL28A1-201ENST00000399429 LST1O00453 97 aa7.04□□□□□ -1.28
COL28A1-201ENST00000399429 RPL36AP83881 106 aaKnown RBP7.04□□□□□ -1.28
COL28A1-201ENST00000399429 BRD3OSQ6XYD6 125 aa7.04□□□□□ -1.28
COL28A1-201ENST00000399429 C22orf34Q6ZV56 151 aa7.04□□□□□ -1.28
COL28A1-201ENST00000399429 RPL36ALQ969Q0 106 aaKnown RBP7.04□□□□□ -1.28
COL28A1-201ENST00000399429 A0A0U1RQV1 116 aa7.03□□□□□ -1.28
COL28A1-201ENST00000399429 ZNF883P0CG24 379 aa7.03□□□□□ -1.28
COL28A1-201ENST00000399429 TMEM86BQ8N661 226 aa7.03□□□□□ -1.28
COL28A1-201ENST00000399429 BRK1Q8WUW1 75 aa7.03□□□□□ -1.28
COL28A1-201ENST00000399429 LINC00526Q96FQ7 95 aa7.03□□□□□ -1.28
COL28A1-201ENST00000399429 TRAV13-2A0A0B4J235 113 aa7.03□□□□□ -1.28
COL28A1-201ENST00000399429 GHRHP01286 108 aa7.03□□□□□ -1.28
COL28A1-201ENST00000399429 MUC6Q6W4X9 2439 aa7.03□□□□□ -1.28
COL28A1-201ENST00000399429 COX7A2LO14548 114 aa7.02□□□□□ -1.29
COL28A1-201ENST00000399429 ELANEP08246 267 aa7.02□□□□□ -1.29
COL28A1-201ENST00000399429 UCNP55089 124 aa7.02□□□□□ -1.29
COL28A1-201ENST00000399429 PRR9Q5T870 116 aa7.02□□□□□ -1.29
COL28A1-201ENST00000399429 SEM1Q6ZVN7 128 aa7.02□□□□□ -1.29
COL28A1-201ENST00000399429 ZNF580Q9UK33 172 aa7.02□□□□□ -1.29
COL28A1-201ENST00000399429 IGLV4-69A0A075B6H9 119 aa7.02□□□□□ -1.29
COL28A1-201ENST00000399429 NPBQ8NG41 125 aa7.02□□□□□ -1.29
COL28A1-201ENST00000399429 MDFICQ9P1T7 246 aa7.02□□□□□ -1.29
COL28A1-201ENST00000399429 LTBP2Q14767 1821 aa7.02□□□□□ -1.29
COL28A1-201ENST00000399429 IGHV1-69P01742 117 aa7.02□□□□□ -1.29
COL28A1-201ENST00000399429 C6orf226Q5I0X4 101 aa7.01□□□□□ -1.29
COL28A1-201ENST00000399429 PRRC2AP48634 2157 aaKnown RBP7.01□□□□□ -1.29
COL28A1-201ENST00000399429 FAM240AA0A1B0GVK7 77 aa7.01□□□□□ -1.29
COL28A1-201ENST00000399429 LECT2O14960 151 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms