RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 IGLC6P0CF74 106 aa10.77□□□□□ -0.69
CUX2-202ENST00000397643 SRIP30626 198 aa10.77□□□□□ -0.69
CUX2-202ENST00000397643 ZFP82Q8N141 532 aa10.77□□□□□ -0.69
CUX2-202ENST00000397643 RASL10AQ92737 203 aa10.77□□□□□ -0.69
CUX2-202ENST00000397643 ANAPC16Q96DE5 110 aa10.77□□□□□ -0.69
CUX2-202ENST00000397643 GFRA4Q9GZZ7 299 aa10.77□□□□□ -0.69
CUX2-202ENST00000397643 SPANXN1Q5VSR9 72 aa10.76□□□□□ -0.69
CUX2-202ENST00000397643 C10orf126Q8N4M7 172 aa10.76□□□□□ -0.69
CUX2-202ENST00000397643 Q8N814 137 aa10.76□□□□□ -0.69
CUX2-202ENST00000397643 ZNF479Q96JC4 524 aa10.76□□□□□ -0.69
CUX2-202ENST00000397643 M0R381 172 aa10.75□□□□□ -0.69
CUX2-202ENST00000397643 GYPEP15421 78 aa10.75□□□□□ -0.69
CUX2-202ENST00000397643 FOXA3P55318 350 aaPredicted RBP10.75□□□□□ -0.69
CUX2-202ENST00000397643 CACNG7P62955 275 aa10.75□□□□□ -0.69
CUX2-202ENST00000397643 PIK3CD-AS1Q5SR53 167 aa10.75□□□□□ -0.69
CUX2-202ENST00000397643 LYZL1Q6UWQ5 148 aa10.75□□□□□ -0.69
CUX2-202ENST00000397643 Q6ZSA8 131 aa10.75□□□□□ -0.69
CUX2-202ENST00000397643 SVBPQ8N300 66 aa10.75□□□□□ -0.69
CUX2-202ENST00000397643 CLRN3Q8NCR9 226 aa10.75□□□□□ -0.69
CUX2-202ENST00000397643 GTSF1Q8WW33 167 aa10.75□□□□□ -0.69
CUX2-202ENST00000397643 CTDSP1Q9GZU7 261 aa10.75□□□□□ -0.69
CUX2-202ENST00000397643 TRGV4A0A0C4DH28 118 aa10.74□□□□□ -0.69
CUX2-202ENST00000397643 SNAPINO95295 136 aa10.74□□□□□ -0.69
CUX2-202ENST00000397643 RHEBQ15382 184 aa10.74□□□□□ -0.69
CUX2-202ENST00000397643 DMRTA1Q5VZB9 504 aa10.74□□□□□ -0.69
CUX2-202ENST00000397643 WDR73Q6P4I2 378 aa10.74□□□□□ -0.69
CUX2-202ENST00000397643 OR10AG1Q8NH19 301 aa10.74□□□□□ -0.69
CUX2-202ENST00000397643 BORCS7Q96B45 105 aa10.74□□□□□ -0.69
CUX2-202ENST00000397643 PGLYRP4Q96LB8 373 aa10.74□□□□□ -0.69
CUX2-202ENST00000397643 MUC21A0A0G2JKD1 596 aa10.73□□□□□ -0.69
CUX2-202ENST00000397643 MUC21A0A140T8X8 626 aa10.73□□□□□ -0.69
CUX2-202ENST00000397643 SMIM27A0A1W2PRY6 76 aa10.73□□□□□ -0.69
CUX2-202ENST00000397643 HIGD1CA8MV81 97 aa10.73□□□□□ -0.69
CUX2-202ENST00000397643 CTRLP40313 264 aa10.73□□□□□ -0.69
CUX2-202ENST00000397643 NAT8BQ9UHF3 227 aa10.73□□□□□ -0.69
CUX2-202ENST00000397643 C7orf77A4D0Y5 90 aa10.72□□□□□ -0.69
CUX2-202ENST00000397643 A8MWV9 139 aa10.72□□□□□ -0.69
CUX2-202ENST00000397643 PSCAO43653 123 aa10.72□□□□□ -0.69
CUX2-202ENST00000397643 PLA2G1BP04054 148 aaKnown RBP10.72□□□□□ -0.69
CUX2-202ENST00000397643 SSTP61278 116 aa10.72□□□□□ -0.69
CUX2-202ENST00000397643 LINC00528Q8N1L1 170 aa10.72□□□□□ -0.69
CUX2-202ENST00000397643 OR4C5Q8NGB2 326 aa10.72□□□□□ -0.69
CUX2-202ENST00000397643 A0A087WWC5 75 aa10.71□□□□□ -0.69
CUX2-202ENST00000397643 TRAV4A0A0B4J268 109 aa10.71□□□□□ -0.69
CUX2-202ENST00000397643 IBA57-AS1B1ANH7 110 aa10.71□□□□□ -0.69
CUX2-202ENST00000397643 RS1O15537 224 aa10.71□□□□□ -0.69
CUX2-202ENST00000397643 LINC01556Q5JQF7 62 aa10.71□□□□□ -0.69
CUX2-202ENST00000397643 SERTAD4-AS1Q5TG53 156 aa10.71□□□□□ -0.69
CUX2-202ENST00000397643 NUP35Q8NFH5 326 aa10.71□□□□□ -0.69
CUX2-202ENST00000397643 DEFB104AQ8WTQ1 72 aa10.71□□□□□ -0.69
CUX2-202ENST00000397643 RPS10P5Q9NQ39 176 aa10.71□□□□□ -0.69
CUX2-202ENST00000397643 IGHV3-38A0A0C4DH36 116 aa10.7□□□□□ -0.7
CUX2-202ENST00000397643 LOC100131303A0A0U1RQF7 123 aa10.7□□□□□ -0.7
CUX2-202ENST00000397643 A0A1B0GUT8 65 aa10.7□□□□□ -0.7
CUX2-202ENST00000397643 CIDEAO60543 219 aa10.7□□□□□ -0.7
CUX2-202ENST00000397643 NTF3P20783 257 aa10.7□□□□□ -0.7
CUX2-202ENST00000397643 TIRAPP58753 221 aa10.7□□□□□ -0.7
CUX2-202ENST00000397643 TWIST1Q15672 202 aa10.7□□□□□ -0.7
CUX2-202ENST00000397643 CFAP126Q5VTH2 177 aa10.7□□□□□ -0.7
CUX2-202ENST00000397643 CNFNQ9BYD5 112 aa10.7□□□□□ -0.7
CUX2-202ENST00000397643 TMEM242Q9NWH2 141 aa10.7□□□□□ -0.7
CUX2-202ENST00000397643 TRGC1P0CF51 173 aa10.69□□□□□ -0.7
CUX2-202ENST00000397643 KRTAP10-4P60372 401 aaPredicted RBP10.69□□□□□ -0.7
CUX2-202ENST00000397643 RIGQ13278 110 aa10.69□□□□□ -0.7
CUX2-202ENST00000397643 WFDC2Q14508 124 aa10.69□□□□□ -0.7
CUX2-202ENST00000397643 AP1S3Q96PC3 154 aa10.69□□□□□ -0.7
CUX2-202ENST00000397643 IMMP2LQ96T52 175 aa10.69□□□□□ -0.7
CUX2-202ENST00000397643 RHODO00212 210 aa10.68□□□□□ -0.7
CUX2-202ENST00000397643 SMIM17P0DL12 118 aa10.68□□□□□ -0.7
CUX2-202ENST00000397643 KCNIP4Q6PIL6 250 aa10.68□□□□□ -0.7
CUX2-202ENST00000397643 SMIM15Q7Z3B0 74 aa10.68□□□□□ -0.7
CUX2-202ENST00000397643 JPT2Q9H910 190 aa10.68□□□□□ -0.7
CUX2-202ENST00000397643 Q9HAA7 133 aa10.68□□□□□ -0.7
CUX2-202ENST00000397643 S100PP25815 95 aa10.67□□□□□ -0.7
CUX2-202ENST00000397643 ZFP2Q6ZN57 461 aa10.67□□□□□ -0.7
CUX2-202ENST00000397643 PKHD1L1Q86WI1 4243 aa10.67□□□□□ -0.7
CUX2-202ENST00000397643 A0A087WWL8 130 aa10.66□□□□□ -0.7
CUX2-202ENST00000397643 A0A1B0GW15 77 aa10.66□□□□□ -0.7
CUX2-202ENST00000397643 FAM74A4Q5TZK3 123 aa10.66□□□□□ -0.7
CUX2-202ENST00000397643 C14orf178Q8N769 122 aaPredicted RBP10.66□□□□□ -0.7
CUX2-202ENST00000397643 SAMD10Q9BYL1 202 aa10.66□□□□□ -0.7
CUX2-202ENST00000397643 IGHV3-73A0A0B4J1V6 119 aa10.65□□□□□ -0.7
CUX2-202ENST00000397643 SH2D6Q7Z4S9 175 aa10.65□□□□□ -0.7
CUX2-202ENST00000397643 BTF3L4Q96K17 158 aa10.65□□□□□ -0.7
CUX2-202ENST00000397643 S100A8P05109 93 aa10.64□□□□□ -0.71
CUX2-202ENST00000397643 GATA1P15976 413 aaPredicted RBP10.64□□□□□ -0.71
CUX2-202ENST00000397643 UFSP1Q6NVU6 142 aa10.64□□□□□ -0.71
CUX2-202ENST00000397643 MRPL54Q6P161 138 aaKnown RBP10.64□□□□□ -0.71
CUX2-202ENST00000397643 SCXQ7RTU7 201 aa10.64□□□□□ -0.71
CUX2-202ENST00000397643 ATP5L2Q7Z4Y8 100 aa10.64□□□□□ -0.71
CUX2-202ENST00000397643 DPH3P1Q9H4G8 78 aa10.64□□□□□ -0.71
CUX2-202ENST00000397643 TRAV9-1A0A075B6T8 112 aa10.63□□□□□ -0.71
CUX2-202ENST00000397643 ATRAIDQ6UW56 229 aa10.63□□□□□ -0.71
CUX2-202ENST00000397643 KIF25-AS1Q9Y6Z4 181 aa10.63□□□□□ -0.71
CUX2-202ENST00000397643 F5H697 171 aa10.62□□□□□ -0.71
CUX2-202ENST00000397643 IGHV3-30P01768 117 aa10.62□□□□□ -0.71
CUX2-202ENST00000397643 IGHV3-33P01772 117 aa10.62□□□□□ -0.71
CUX2-202ENST00000397643 MGPP08493 103 aa10.62□□□□□ -0.71
CUX2-202ENST00000397643 IGHV3-30-3P0DP02 117 aa10.62□□□□□ -0.71
CUX2-202ENST00000397643 IGHV3-30-5P0DP03 117 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms