RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 H0Y9J4 135 aa9.1□□□□□ -0.95
SYNPO-202ENST00000394243 MRPS12O15235 138 aaKnown RBP9.1□□□□□ -0.95
SYNPO-202ENST00000394243 TIRAPP58753 221 aa9.1□□□□□ -0.95
SYNPO-202ENST00000394243 IGHV7-81A0A0B4J1V7 117 aa9.1□□□□□ -0.95
SYNPO-202ENST00000394243 IGLV2-8P01709 118 aa9.1□□□□□ -0.95
SYNPO-202ENST00000394243 IGHV3-30P01768 117 aa9.1□□□□□ -0.95
SYNPO-202ENST00000394243 IGHV3-33P01772 117 aa9.1□□□□□ -0.95
SYNPO-202ENST00000394243 IGHV3-30-5P0DP03 117 aa9.1□□□□□ -0.95
SYNPO-202ENST00000394243 DEFB1P60022 68 aa9.1□□□□□ -0.95
SYNPO-202ENST00000394243 PIK3CD-AS1Q5SR53 167 aa9.1□□□□□ -0.95
SYNPO-202ENST00000394243 TRBV6-1A0A0K0K1D8 114 aa9.09□□□□□ -0.95
SYNPO-202ENST00000394243 C20orf203Q8NBC4 194 aa9.09□□□□□ -0.95
SYNPO-202ENST00000394243 TP53TG3Q9ULZ0 132 aa9.09□□□□□ -0.95
SYNPO-202ENST00000394243 TRIAP1O43715 76 aa9.09□□□□□ -0.95
SYNPO-202ENST00000394243 LINC00694P0DN24 101 aa9.09□□□□□ -0.95
SYNPO-202ENST00000394243 FANCD2OSQ96PS1 177 aa9.09□□□□□ -0.95
SYNPO-202ENST00000394243 SNURFQ9Y675 71 aa9.09□□□□□ -0.95
SYNPO-202ENST00000394243 E7EUB6 86 aa9.09□□□□□ -0.95
SYNPO-202ENST00000394243 MED14OSP0DP75 135 aa9.09□□□□□ -0.95
SYNPO-202ENST00000394243 AJUBAQ96IF1 538 aa9.09□□□□□ -0.95
SYNPO-202ENST00000394243 YPEL4Q96NS1 127 aa9.09□□□□□ -0.95
SYNPO-202ENST00000394243 SLPIP03973 132 aa9.08□□□□□ -0.96
SYNPO-202ENST00000394243 C16orf74Q96GX8 76 aa9.08□□□□□ -0.96
SYNPO-202ENST00000394243 TICRRQ7Z2Z1 1910 aa9.08□□□□□ -0.96
SYNPO-202ENST00000394243 IGKV4-1P06312 121 aa9.08□□□□□ -0.96
SYNPO-202ENST00000394243 SERP2Q8N6R1 65 aa9.08□□□□□ -0.96
SYNPO-202ENST00000394243 NDUFA1O15239 70 aa9.08□□□□□ -0.96
SYNPO-202ENST00000394243 MDFICQ9P1T7 246 aa9.08□□□□□ -0.96
SYNPO-202ENST00000394243 DKK4Q9UBT3 224 aa9.08□□□□□ -0.96
SYNPO-202ENST00000394243 PLXNB3Q9ULL4 1909 aa9.08□□□□□ -0.96
SYNPO-202ENST00000394243 FREM1Q5H8C1 2179 aa9.08□□□□□ -0.96
SYNPO-202ENST00000394243 SLURP1P55000 103 aa9.08□□□□□ -0.96
SYNPO-202ENST00000394243 XGP55808 180 aa9.08□□□□□ -0.96
SYNPO-202ENST00000394243 ANAPC1Q9H1A4 1944 aa9.07□□□□□ -0.96
SYNPO-202ENST00000394243 COX7BP24311 80 aa9.07□□□□□ -0.96
SYNPO-202ENST00000394243 DENND4CQ5VZ89 1909 aa9.07□□□□□ -0.96
SYNPO-202ENST00000394243 CENPVL3A0A0U1RRI6 287 aa9.07□□□□□ -0.96
SYNPO-202ENST00000394243 TIMM17BO60830 172 aa9.07□□□□□ -0.96
SYNPO-202ENST00000394243 ESM1Q9NQ30 184 aa9.07□□□□□ -0.96
SYNPO-202ENST00000394243 P0DMU3 169 aa9.06□□□□□ -0.96
SYNPO-202ENST00000394243 FAM231AP0DMU4 169 aa9.06□□□□□ -0.96
SYNPO-202ENST00000394243 FAM231CP0DMU5 169 aa9.06□□□□□ -0.96
SYNPO-202ENST00000394243 ATP5EP2Q5VTU8 51 aa9.06□□□□□ -0.96
SYNPO-202ENST00000394243 MED12LQ86YW9 2145 aa9.06□□□□□ -0.96
SYNPO-202ENST00000394243 ATRXP46100 2492 aa9.06□□□□□ -0.96
SYNPO-202ENST00000394243 SPAG11BQ08648 103 aa9.06□□□□□ -0.96
SYNPO-202ENST00000394243 NEXN-AS1Q8NBZ9 246 aa9.06□□□□□ -0.96
SYNPO-202ENST00000394243 COX7CP15954 63 aa9.06□□□□□ -0.96
SYNPO-202ENST00000394243 ZNF80P51504 273 aaPredicted RBP9.06□□□□□ -0.96
SYNPO-202ENST00000394243 WNK1Q9H4A3 2382 aa9.06□□□□□ -0.96
SYNPO-202ENST00000394243 KRTAP27-1Q3LI81 207 aa9.06□□□□□ -0.96
SYNPO-202ENST00000394243 INSL3P51460 131 aa9.05□□□□□ -0.96
SYNPO-202ENST00000394243 LRRC75A-AS1Q8N1F1 130 aa9.05□□□□□ -0.96
SYNPO-202ENST00000394243 Q6ZSR3 168 aa9.05□□□□□ -0.96
SYNPO-202ENST00000394243 C2orf91Q6ZV80 131 aa9.05□□□□□ -0.96
SYNPO-202ENST00000394243 IMUPQ9GZP8 106 aa9.05□□□□□ -0.96
SYNPO-202ENST00000394243 TRBV30A0A0K0K1B3 111 aa9.05□□□□□ -0.96
SYNPO-202ENST00000394243 CCL24O00175 119 aa9.05□□□□□ -0.96
SYNPO-202ENST00000394243 HRCT1Q6UXD1 115 aa9.05□□□□□ -0.96
SYNPO-202ENST00000394243 HHLA3Q9XRX5 114 aa9.05□□□□□ -0.96
SYNPO-202ENST00000394243 COL4A6Q14031 1691 aa9.05□□□□□ -0.96
SYNPO-202ENST00000394243 IGHV4-59P01825 116 aa9.05□□□□□ -0.96
SYNPO-202ENST00000394243 NCOA6Q14686 2063 aaPredicted RBP9.04□□□□□ -0.96
SYNPO-202ENST00000394243 ATP5EP56381 51 aaPredicted RBP9.04□□□□□ -0.96
SYNPO-202ENST00000394243 UBE2AP49459 152 aa9.04□□□□□ -0.96
SYNPO-202ENST00000394243 ODF3L1Q8IXM7 274 aa9.04□□□□□ -0.96
SYNPO-202ENST00000394243 USP17L23D6RBM5 183 aa9.03□□□□□ -0.96
SYNPO-202ENST00000394243 NDUFC1O43677 76 aa9.03□□□□□ -0.96
SYNPO-202ENST00000394243 Q96MF0 132 aa9.03□□□□□ -0.96
SYNPO-202ENST00000394243 CFAP126Q5VTH2 177 aa9.03□□□□□ -0.96
SYNPO-202ENST00000394243 TMEM263Q8WUH6 116 aaKnown RBP9.03□□□□□ -0.96
SYNPO-202ENST00000394243 A6NED7 52 aa9.03□□□□□ -0.96
SYNPO-202ENST00000394243 DEFB112Q30KQ8 113 aa9.03□□□□□ -0.96
SYNPO-202ENST00000394243 TMEM223A0PJW6 202 aa9.03□□□□□ -0.96
SYNPO-202ENST00000394243 C20orf173Q96LM9 149 aa9.02□□□□□ -0.97
SYNPO-202ENST00000394243 FAM215AQ9Y5M1 114 aa9.02□□□□□ -0.97
SYNPO-202ENST00000394243 J3QLI3 93 aa9.02□□□□□ -0.97
SYNPO-202ENST00000394243 IGKV1D-37A0A075B6S9 117 aa9.02□□□□□ -0.97
SYNPO-202ENST00000394243 BLCAPP62952 87 aa9.02□□□□□ -0.97
SYNPO-202ENST00000394243 Q8N9W7 124 aa9.02□□□□□ -0.97
SYNPO-202ENST00000394243 MBD6Q96DN6 1003 aa9.02□□□□□ -0.97
SYNPO-202ENST00000394243 BRWD3Q6RI45 1802 aa9.01□□□□□ -0.97
SYNPO-202ENST00000394243 VPREB3Q9UKI3 123 aa9.01□□□□□ -0.97
SYNPO-202ENST00000394243 LINC00308Q8TCZ7 52 aa9.01□□□□□ -0.97
SYNPO-202ENST00000394243 KIAA1671Q9BY89 1806 aa9.01□□□□□ -0.97
SYNPO-202ENST00000394243 SMIM9A6NGZ8 99 aa9.01□□□□□ -0.97
SYNPO-202ENST00000394243 KLK12Q9UKR0 248 aa9□□□□□ -0.97
SYNPO-202ENST00000394243 ZNF22P17026 224 aaPredicted RBP9□□□□□ -0.97
SYNPO-202ENST00000394243 WT1P19544 449 aaPredicted RBP9□□□□□ -0.97
SYNPO-202ENST00000394243 CDKN2A-AS1Q9UH64 79 aa9□□□□□ -0.97
SYNPO-202ENST00000394243 LY6G6EA0A0G2JKS1 128 aa9□□□□□ -0.97
SYNPO-202ENST00000394243 U3KQA8 63 aa9□□□□□ -0.97
SYNPO-202ENST00000394243 ARHGAP32A7KAX9 2087 aa8.99□□□□□ -0.97
SYNPO-202ENST00000394243 SIRPDQ9H106 197 aa8.99□□□□□ -0.97
SYNPO-202ENST00000394243 C5orf56Q8N8D9 126 aa8.99□□□□□ -0.97
SYNPO-202ENST00000394243 SPART-AS1P0CW21 52 aa8.99□□□□□ -0.97
SYNPO-202ENST00000394243 SP5Q6BEB4 398 aaPredicted RBP8.99□□□□□ -0.97
SYNPO-202ENST00000394243 WFDC10BQ8IUB3 73 aa8.99□□□□□ -0.97
SYNPO-202ENST00000394243 PRR4Q16378 134 aa8.98□□□□□ -0.97
SYNPO-202ENST00000394243 HCFC1P51610 2035 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms