RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 MRPS36P82909 103 aaKnown RBP7.38□□□□□ -1.23
COL17A1-203ENST00000393211 RNF183Q96D59 192 aa7.38□□□□□ -1.23
COL17A1-203ENST00000393211 SPTA1P02549 2419 aa7.37□□□□□ -1.23
COL17A1-203ENST00000393211 TRBV30A0A0K0K1B3 111 aa7.37□□□□□ -1.23
COL17A1-203ENST00000393211 A8MTW9 85 aa7.37□□□□□ -1.23
COL17A1-203ENST00000393211 SLC25A20O43772 301 aa7.37□□□□□ -1.23
COL17A1-203ENST00000393211 ATXN8Q156A1 80 aa7.37□□□□□ -1.23
COL17A1-203ENST00000393211 MUSTN1Q8IVN3 82 aa7.37□□□□□ -1.23
COL17A1-203ENST00000393211 ANKRD29Q8N6D5 301 aa7.37□□□□□ -1.23
COL17A1-203ENST00000393211 CACNA1BQ00975 2339 aa7.37□□□□□ -1.23
COL17A1-203ENST00000393211 ABCA2Q9BZC7 2435 aa7.36□□□□□ -1.23
COL17A1-203ENST00000393211 TRAV12-2A0A075B6T6 113 aa7.36□□□□□ -1.23
COL17A1-203ENST00000393211 A0A0J9YXV3 536 aa7.36□□□□□ -1.23
COL17A1-203ENST00000393211 A0A0J9YXY3 114 aa7.36□□□□□ -1.23
COL17A1-203ENST00000393211 ELANEP08246 267 aa7.36□□□□□ -1.23
COL17A1-203ENST00000393211 EDN2P20800 178 aa7.36□□□□□ -1.23
COL17A1-203ENST00000393211 ATP5J2P56134 94 aa7.36□□□□□ -1.23
COL17A1-203ENST00000393211 SPINK13Q1W4C9 94 aa7.36□□□□□ -1.23
COL17A1-203ENST00000393211 SFTA2Q6UW10 78 aa7.36□□□□□ -1.23
COL17A1-203ENST00000393211 WFDC12Q8WWY7 111 aa7.36□□□□□ -1.23
COL17A1-203ENST00000393211 SPANXDQ9BXN6 97 aa7.36□□□□□ -1.23
COL17A1-203ENST00000393211 PRORYQ9H606 182 aa7.36□□□□□ -1.23
COL17A1-203ENST00000393211 SPANXCQ9NY87 97 aa7.36□□□□□ -1.23
COL17A1-203ENST00000393211 MED13LQ71F56 2210 aa7.36□□□□□ -1.23
COL17A1-203ENST00000393211 IGHV4-30-2A0A087WSY4 118 aa7.35□□□□□ -1.23
COL17A1-203ENST00000393211 TRAV2A0A0B4J234 112 aa7.35□□□□□ -1.23
COL17A1-203ENST00000393211 IGHV3-30-3P0DP02 117 aa7.35□□□□□ -1.23
COL17A1-203ENST00000393211 LY6DQ14210 128 aa7.35□□□□□ -1.23
COL17A1-203ENST00000393211 Q5PR19 223 aa7.35□□□□□ -1.23
COL17A1-203ENST00000393211 OPRPNQ99935 248 aaPredicted RBP7.35□□□□□ -1.23
COL17A1-203ENST00000393211 TIMM21Q9BVV7 248 aa7.35□□□□□ -1.23
COL17A1-203ENST00000393211 SPANXA1Q9NS26 97 aa7.35□□□□□ -1.23
COL17A1-203ENST00000393211 IGHV1-58A0A0C4DH39 117 aa7.34□□□□□ -1.23
COL17A1-203ENST00000393211 TINCRA0A1B0GVN0 87 aa7.34□□□□□ -1.23
COL17A1-203ENST00000393211 C9JAW5 83 aa7.34□□□□□ -1.23
COL17A1-203ENST00000393211 J3QLI3 93 aa7.34□□□□□ -1.23
COL17A1-203ENST00000393211 MT-ATP8P03928 68 aa7.34□□□□□ -1.23
COL17A1-203ENST00000393211 CD28P10747 220 aa7.34□□□□□ -1.23
COL17A1-203ENST00000393211 GNLYP22749 145 aa7.34□□□□□ -1.23
COL17A1-203ENST00000393211 XGP55808 180 aa7.34□□□□□ -1.23
COL17A1-203ENST00000393211 FHL3Q13643 280 aa7.34□□□□□ -1.23
COL17A1-203ENST00000393211 EIF4EBP3O60516 100 aaPredicted RBP7.34□□□□□ -1.24
COL17A1-203ENST00000393211 TIMM17BO60830 172 aa7.34□□□□□ -1.24
COL17A1-203ENST00000393211 RPL13AP40429 203 aaKnown RBP7.34□□□□□ -1.24
COL17A1-203ENST00000393211 LINC01620Q4KN68 170 aa7.34□□□□□ -1.24
COL17A1-203ENST00000393211 RAX2Q96IS3 184 aa7.34□□□□□ -1.24
COL17A1-203ENST00000393211 DNAJC30Q96LL9 226 aa7.34□□□□□ -1.24
COL17A1-203ENST00000393211 UBE2E2Q96LR5 201 aa7.34□□□□□ -1.24
COL17A1-203ENST00000393211 LITAFQ99732 161 aa7.34□□□□□ -1.24
COL17A1-203ENST00000393211 LINC00467Q9BRT7 94 aa7.34□□□□□ -1.24
COL17A1-203ENST00000393211 CEP295Q9C0D2 2601 aa7.34□□□□□ -1.24
COL17A1-203ENST00000393211 GEMIN7Q9H840 131 aaKnown RBP7.34□□□□□ -1.24
COL17A1-203ENST00000393211 YAE1D1Q9NRH1 226 aa7.34□□□□□ -1.24
COL17A1-203ENST00000393211 TNFRSF18Q9Y5U5 241 aa7.34□□□□□ -1.24
COL17A1-203ENST00000393211 IGF2RP11717 2491 aa7.33□□□□□ -1.24
COL17A1-203ENST00000393211 TRBV10-2A0A0K0K1G8 114 aa7.33□□□□□ -1.24
COL17A1-203ENST00000393211 IGKV3-20P01619 116 aa7.33□□□□□ -1.24
COL17A1-203ENST00000393211 IFITM1P13164 125 aa7.33□□□□□ -1.24
COL17A1-203ENST00000393211 DEFB104AQ8WTQ1 72 aa7.33□□□□□ -1.24
COL17A1-203ENST00000393211 HIVEP3Q5T1R4 2406 aa7.32□□□□□ -1.24
COL17A1-203ENST00000393211 AVPP01185 164 aa7.32□□□□□ -1.24
COL17A1-203ENST00000393211 COX6CP09669 75 aa7.32□□□□□ -1.24
COL17A1-203ENST00000393211 SYNJ2BPP57105 145 aa7.32□□□□□ -1.24
COL17A1-203ENST00000393211 Q1RN00 199 aa7.32□□□□□ -1.24
COL17A1-203ENST00000393211 DEFB112Q30KQ8 113 aa7.32□□□□□ -1.24
COL17A1-203ENST00000393211 TMEM95Q3KNT9 176 aa7.32□□□□□ -1.24
COL17A1-203ENST00000393211 FAM104AQ969W3 186 aa7.32□□□□□ -1.24
COL17A1-203ENST00000393211 VSIG2Q96IQ7 327 aa7.32□□□□□ -1.24
COL17A1-203ENST00000393211 SPXQ9BT56 116 aa7.32□□□□□ -1.24
COL17A1-203ENST00000393211 CACNA1AO00555 2505 aa7.32□□□□□ -1.24
COL17A1-203ENST00000393211 IGHV4-59P01825 116 aa7.31□□□□□ -1.24
COL17A1-203ENST00000393211 HOXD3P31249 432 aaPredicted RBP7.31□□□□□ -1.24
COL17A1-203ENST00000393211 ZNF415Q09FC8 603 aa7.31□□□□□ -1.24
COL17A1-203ENST00000393211 MIAQ16674 131 aa7.31□□□□□ -1.24
COL17A1-203ENST00000393211 ZFAND6Q6FIF0 208 aa7.31□□□□□ -1.24
COL17A1-203ENST00000393211 LINC01356Q8N9X3 169 aa7.31□□□□□ -1.24
COL17A1-203ENST00000393211 NDUFA12Q9UI09 145 aa7.31□□□□□ -1.24
COL17A1-203ENST00000393211 CHD8Q9HCK8 2581 aa7.31□□□□□ -1.24
COL17A1-203ENST00000393211 H3BT86 120 aa7.3□□□□□ -1.24
COL17A1-203ENST00000393211 TIRAPP58753 221 aa7.3□□□□□ -1.24
COL17A1-203ENST00000393211 CITED1Q99966 193 aa7.3□□□□□ -1.24
COL17A1-203ENST00000393211 CHCHD7Q9BUK0 85 aa7.3□□□□□ -1.24
COL17A1-203ENST00000393211 UBE2D4Q9Y2X8 147 aa7.3□□□□□ -1.24
COL17A1-203ENST00000393211 SPTBN1Q01082 2364 aaKnown RBP7.3□□□□□ -1.24
COL17A1-203ENST00000393211 IGHV3-64A0A075B6Q5 118 aa7.3□□□□□ -1.24
COL17A1-203ENST00000393211 H3BMM0 161 aa7.3□□□□□ -1.24
COL17A1-203ENST00000393211 MRPL23Q16540 153 aaKnown RBP7.3□□□□□ -1.24
COL17A1-203ENST00000393211 Q6Q795 121 aa7.3□□□□□ -1.24
COL17A1-203ENST00000393211 TEX29Q8N6K0 151 aa7.3□□□□□ -1.24
COL17A1-203ENST00000393211 VPREB3Q9UKI3 123 aa7.3□□□□□ -1.24
COL17A1-203ENST00000393211 ICOSQ9Y6W8 199 aa7.3□□□□□ -1.24
COL17A1-203ENST00000393211 IGLV5-45A0A087WSX0 123 aa7.29□□□□□ -1.24
COL17A1-203ENST00000393211 TRIAP1O43715 76 aa7.29□□□□□ -1.24
COL17A1-203ENST00000393211 TGFAP01135 160 aa7.29□□□□□ -1.24
COL17A1-203ENST00000393211 IGHV3-53P01767 116 aa7.29□□□□□ -1.24
COL17A1-203ENST00000393211 RBMY1A1P0DJD3 496 aaKnown RBP7.29□□□□□ -1.24
COL17A1-203ENST00000393211 RBMY1CP0DJD4 496 aa7.29□□□□□ -1.24
COL17A1-203ENST00000393211 RBMY1FQ15415 496 aaKnown RBP7.29□□□□□ -1.24
COL17A1-203ENST00000393211 BEAN1Q3B7T3 259 aa7.29□□□□□ -1.24
COL17A1-203ENST00000393211 C10orf99Q6UWK7 81 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms