RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 A0A0J9YX75 114 aa9.19□□□□□ -0.94
CIITA-202ENST00000381835 TM2D2Q9BX73 214 aa9.19□□□□□ -0.94
CIITA-202ENST00000381835 MAP6D1Q9H9H5 199 aa9.19□□□□□ -0.94
CIITA-202ENST00000381835 KNCNA6PVL3 124 aa9.19□□□□□ -0.94
CIITA-202ENST00000381835 APRG1Q8IVJ8 170 aa9.19□□□□□ -0.94
CIITA-202ENST00000381835 HLA-DRB4P13762 266 aa9.18□□□□□ -0.94
CIITA-202ENST00000381835 SPANXN1Q5VSR9 72 aa9.18□□□□□ -0.94
CIITA-202ENST00000381835 SHISA2Q6UWI4 295 aa9.18□□□□□ -0.94
CIITA-202ENST00000381835 FOXI2Q6ZQN5 318 aa9.18□□□□□ -0.94
CIITA-202ENST00000381835 NRACQ8N912 160 aa9.18□□□□□ -0.94
CIITA-202ENST00000381835 PHLDA1Q8WV24 401 aaPredicted RBP9.18□□□□□ -0.94
CIITA-202ENST00000381835 HLA-DRB4X5D2U9 266 aa9.18□□□□□ -0.94
CIITA-202ENST00000381835 ODF3L2Q3SX64 289 aa9.17□□□□□ -0.94
CIITA-202ENST00000381835 A0A087WX48 190 aa9.17□□□□□ -0.94
CIITA-202ENST00000381835 K7EMI3 77 aa9.17□□□□□ -0.94
CIITA-202ENST00000381835 C9orf66Q5T8R8 295 aa9.17□□□□□ -0.94
CIITA-202ENST00000381835 MAPKAPK5-AS1Q8N8E1 139 aa9.17□□□□□ -0.94
CIITA-202ENST00000381835 LENEPQ9Y5L5 61 aa9.17□□□□□ -0.94
CIITA-202ENST00000381835 TEX48A0A1B0GUV7 120 aa9.16□□□□□ -0.94
CIITA-202ENST00000381835 PRR9Q5T870 116 aa9.16□□□□□ -0.94
CIITA-202ENST00000381835 DUSP14O95147 198 aaKnown RBP9.16□□□□□ -0.94
CIITA-202ENST00000381835 CD7P09564 240 aa9.16□□□□□ -0.94
CIITA-202ENST00000381835 PLNP26678 52 aa9.16□□□□□ -0.94
CIITA-202ENST00000381835 INSL3P51460 131 aa9.16□□□□□ -0.94
CIITA-202ENST00000381835 MTURNQ8N3F0 131 aa9.16□□□□□ -0.94
CIITA-202ENST00000381835 ZFAND2AQ8N6M9 145 aa9.16□□□□□ -0.94
CIITA-202ENST00000381835 OR11H12B2RN74 326 aa9.15□□□□□ -0.94
CIITA-202ENST00000381835 IGLL5B9A064 214 aa9.15□□□□□ -0.94
CIITA-202ENST00000381835 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.15□□□□□ -0.94
CIITA-202ENST00000381835 TAL2Q16559 108 aa9.15□□□□□ -0.94
CIITA-202ENST00000381835 Q6ZQT7 251 aa9.15□□□□□ -0.94
CIITA-202ENST00000381835 FAM19A4Q96LR4 140 aa9.15□□□□□ -0.94
CIITA-202ENST00000381835 HIST1H4GQ99525 98 aa9.15□□□□□ -0.94
CIITA-202ENST00000381835 E9PLD3 99 aa9.15□□□□□ -0.95
CIITA-202ENST00000381835 RNASE4P34096 147 aaKnown RBP9.15□□□□□ -0.95
CIITA-202ENST00000381835 CRYBA4P53673 196 aa9.15□□□□□ -0.95
CIITA-202ENST00000381835 WFDC9Q8NEX5 89 aa9.15□□□□□ -0.95
CIITA-202ENST00000381835 H3BMM0 161 aa9.14□□□□□ -0.95
CIITA-202ENST00000381835 H3BVH4 76 aa9.14□□□□□ -0.95
CIITA-202ENST00000381835 C12orf74Q32Q52 190 aa9.14□□□□□ -0.95
CIITA-202ENST00000381835 BEAN1Q3B7T3 259 aa9.14□□□□□ -0.95
CIITA-202ENST00000381835 IGHV4-4A0A075B6R2 117 aa9.14□□□□□ -0.95
CIITA-202ENST00000381835 H7C1H1 209 aa9.14□□□□□ -0.95
CIITA-202ENST00000381835 SPINK13Q1W4C9 94 aa9.14□□□□□ -0.95
CIITA-202ENST00000381835 MRAP2Q96G30 205 aa9.14□□□□□ -0.95
CIITA-202ENST00000381835 WFDC10AQ9H1F0 79 aa9.14□□□□□ -0.95
CIITA-202ENST00000381835 PKD1L1Q8TDX9 2849 aa9.13□□□□□ -0.95
CIITA-202ENST00000381835 TRAV12-2A0A075B6T6 113 aa9.13□□□□□ -0.95
CIITA-202ENST00000381835 TRBV7-9A0A0J9YWB2 115 aa9.13□□□□□ -0.95
CIITA-202ENST00000381835 F8W1H4 67 aa9.13□□□□□ -0.95
CIITA-202ENST00000381835 F8VRH5 84 aa9.13□□□□□ -0.95
CIITA-202ENST00000381835 SMIM2Q9BVW6 85 aa9.13□□□□□ -0.95
CIITA-202ENST00000381835 CMYA5Q8N3K9 4069 aa9.12□□□□□ -0.95
CIITA-202ENST00000381835 TRAV26-1A0A087WT03 109 aa9.12□□□□□ -0.95
CIITA-202ENST00000381835 TRAV12-1A0A0B4J245 112 aa9.12□□□□□ -0.95
CIITA-202ENST00000381835 KLLNB2CW77 178 aa9.12□□□□□ -0.95
CIITA-202ENST00000381835 WFDC2Q14508 124 aa9.12□□□□□ -0.95
CIITA-202ENST00000381835 AMTNQ6UX39 209 aa9.12□□□□□ -0.95
CIITA-202ENST00000381835 STHQ8IWL8 128 aa9.12□□□□□ -0.95
CIITA-202ENST00000381835 ODF3Q96PU9 254 aa9.12□□□□□ -0.95
CIITA-202ENST00000381835 SCGB3A1Q96QR1 104 aa9.12□□□□□ -0.95
CIITA-202ENST00000381835 TRAV12-3A0A0B4J271 114 aa9.11□□□□□ -0.95
CIITA-202ENST00000381835 RBMY1BA6NDE4 496 aaKnown RBP9.11□□□□□ -0.95
CIITA-202ENST00000381835 RBMY1EA6NEQ0 496 aaKnown RBP9.11□□□□□ -0.95
CIITA-202ENST00000381835 H3BMG7 143 aa9.11□□□□□ -0.95
CIITA-202ENST00000381835 RBMY1DP0C7P1 496 aaKnown RBP9.11□□□□□ -0.95
CIITA-202ENST00000381835 CMC4P56277 68 aaPredicted RBP9.11□□□□□ -0.95
CIITA-202ENST00000381835 ORMDL2Q53FV1 153 aa9.11□□□□□ -0.95
CIITA-202ENST00000381835 TRAV21A0A0B4J279 112 aa9.11□□□□□ -0.95
CIITA-202ENST00000381835 MYMXA0A1B0GTQ4 84 aa9.11□□□□□ -0.95
CIITA-202ENST00000381835 M0R381 172 aa9.11□□□□□ -0.95
CIITA-202ENST00000381835 CKS1BP61024 79 aa9.11□□□□□ -0.95
CIITA-202ENST00000381835 OR11H2Q8NH07 326 aa9.11□□□□□ -0.95
CIITA-202ENST00000381835 C19orf73Q9NVV2 129 aa9.11□□□□□ -0.95
CIITA-202ENST00000381835 ANK2Q01484 3957 aa9.1□□□□□ -0.95
CIITA-202ENST00000381835 MDFIQ99750 246 aa9.1□□□□□ -0.95
CIITA-202ENST00000381835 TRBV7-3A0A075B6L6 115 aa9.1□□□□□ -0.95
CIITA-202ENST00000381835 J3QR89 54 aa9.1□□□□□ -0.95
CIITA-202ENST00000381835 S100A4P26447 101 aaKnown RBP9.1□□□□□ -0.95
CIITA-202ENST00000381835 SUMO2P61956 95 aaKnown RBP9.1□□□□□ -0.95
CIITA-202ENST00000381835 TOMM6Q96B49 74 aa9.1□□□□□ -0.95
CIITA-202ENST00000381835 SIGMAR1Q99720 223 aa9.1□□□□□ -0.95
CIITA-202ENST00000381835 FAM110AQ9BQ89 295 aa9.1□□□□□ -0.95
CIITA-202ENST00000381835 SPANXB1Q9NS25 103 aaPredicted RBP9.1□□□□□ -0.95
CIITA-202ENST00000381835 PGPEP1Q9NXJ5 209 aa9.1□□□□□ -0.95
CIITA-202ENST00000381835 A8MTW9 85 aa9.09□□□□□ -0.95
CIITA-202ENST00000381835 SPRY2O43597 315 aa9.09□□□□□ -0.95
CIITA-202ENST00000381835 RRN3P1Q2M238 152 aa9.09□□□□□ -0.95
CIITA-202ENST00000381835 OXLD1Q5BKU9 147 aa9.09□□□□□ -0.95
CIITA-202ENST00000381835 NEXN-AS1Q8NBZ9 246 aa9.09□□□□□ -0.95
CIITA-202ENST00000381835 RASL10AQ92737 203 aa9.09□□□□□ -0.95
CIITA-202ENST00000381835 GTSF1LQ9H1H1 148 aa9.09□□□□□ -0.95
CIITA-202ENST00000381835 DPH3P1Q9H4G8 78 aa9.09□□□□□ -0.95
CIITA-202ENST00000381835 CYSLTR1Q9Y271 337 aa9.09□□□□□ -0.95
CIITA-202ENST00000381835 AZU1P20160 251 aa9.08□□□□□ -0.96
CIITA-202ENST00000381835 GAGE13Q4V321 117 aa9.08□□□□□ -0.96
CIITA-202ENST00000381835 SH2D6Q7Z4S9 175 aa9.08□□□□□ -0.96
CIITA-202ENST00000381835 TRPT1Q86TN4 253 aaKnown RBP9.08□□□□□ -0.96
CIITA-202ENST00000381835 C14orf178Q8N769 122 aaPredicted RBP9.08□□□□□ -0.96
CIITA-202ENST00000381835 RPL39LQ96EH5 51 aaKnown RBP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms