RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ARPC5O15511 151 aa0.27□□□□□ -2.37
VPS13A-206ENST00000376646 KLKP1Q107X0 134 aa0.27□□□□□ -2.37
VPS13A-206ENST00000376646 BATF3Q9NR55 127 aa0.27□□□□□ -2.37
VPS13A-206ENST00000376646 TMEM14BQ9NUH8 114 aa0.27□□□□□ -2.37
VPS13A-206ENST00000376646 GSKIPQ9P0R6 139 aa0.27□□□□□ -2.37
VPS13A-206ENST00000376646 LSM2Q9Y333 95 aaKnown RBP0.27□□□□□ -2.37
VPS13A-206ENST00000376646 NWD1Q149M9 1564 aa0.27□□□□□ -2.37
VPS13A-206ENST00000376646 F8P00451 2351 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 MKI67P46013 3256 aaKnown RBP0.26□□□□□ -2.37
VPS13A-206ENST00000376646 ABCA1O95477 2261 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 BIVM-ERCC5R4GMW8 1640 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 ATP6V0E2Q8NHE4 81 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 DYNLRB2Q8TF09 96 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 SMR3AQ99954 134 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 EP400Q96L91 3159 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 PLXNA2O75051 1894 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 KCPQ6ZWJ8 1503 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 WDR87Q6ZQQ6 2873 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 NBASA2RRP1 2371 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 APC2O95996 2303 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 APOC1P02654 83 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 CKS1BP61024 79 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 HIST1H1AQ02539 215 aaPredicted RBP0.26□□□□□ -2.37
VPS13A-206ENST00000376646 PTPRMP28827 1452 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 CSPG4Q6UVK1 2322 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 LRP6O75581 1613 aa0.26□□□□□ -2.37
VPS13A-206ENST00000376646 ABCA4P78363 2273 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 CSMD1Q96PZ7 3565 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 J3QLW9 94 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 M0R129 80 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 YPEL1O60688 119 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 MPC1LP0DKB6 136 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 SLC25A6P12236 298 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 NCS1P62166 190 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 TSKUQ8WUA8 353 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 LZICQ8WZA0 190 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 TMEM141Q96I45 108 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 VPS25Q9BRG1 176 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 SMIM3Q9BZL3 60 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 UHRF1BP1LA0JNW5 1464 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 CDK5RAP2Q96SN8 1893 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 LRP1BQ9NZR2 4599 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 TRAV2A0A0B4J234 112 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 TEX49A0A1B0GTD5 131 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 FAM236AA0A1B0GUQ0 79 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 FAM236BA0A1B0GV22 79 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 M0R2P5 195 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 KRTAP19-6Q3LI70 58 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 ATP11AUNQ6ZP68 121 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 DSCR8Q96T75 97 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 ALKQ9UM73 1620 aa0.25□□□□□ -2.37
VPS13A-206ENST00000376646 RIMS1Q86UR5 1692 aaKnown RBP0.24□□□□□ -2.37
VPS13A-206ENST00000376646 CACNA1EQ15878 2313 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 TCRBV3S1A0A5B6 114 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 ZNF670-ZNF695F2Z2N8 137 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 IGLC6P0CF74 106 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 PYYP10082 97 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 MMGT1Q8N4V1 131 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 IFI27L1Q96BM0 104 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 COA4Q9NYJ1 87 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 OVOS2A0A0J9YW53 1432 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 OVOS2Q6IE36 1432 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 MYCBP2O75592 4640 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 DNAH7Q8WXX0 4024 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 CRYBG3Q68DQ2 2970 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 SPTBN5Q9NRC6 3674 aaKnown RBP0.24□□□□□ -2.37
VPS13A-206ENST00000376646 TANC1Q9C0D5 1861 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 A0A096LNT2 108 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 LOC105371267A0A1B0GV96 52 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 OR2T2Q6IF00 324 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 LINC00846Q9NV44 126 aa0.24□□□□□ -2.37
VPS13A-206ENST00000376646 MAP2P11137 1827 aaKnown RBP0.23□□□□□ -2.37
VPS13A-206ENST00000376646 MYH13Q9UKX3 1938 aa0.23□□□□□ -2.37
VPS13A-206ENST00000376646 RALGAPBQ86X10 1494 aa0.23□□□□□ -2.37
VPS13A-206ENST00000376646 ZFHX3Q15911 3703 aa0.23□□□□□ -2.37
VPS13A-206ENST00000376646 STARD9Q9P2P6 4700 aa0.23□□□□□ -2.37
VPS13A-206ENST00000376646 TRBV20-1A0A075B6N2 111 aa0.23□□□□□ -2.37
VPS13A-206ENST00000376646 ELOF1P60002 83 aaKnown RBP0.23□□□□□ -2.37
VPS13A-206ENST00000376646 ALX1Q15699 326 aa0.23□□□□□ -2.37
VPS13A-206ENST00000376646 CYP2G1PQ6ZSU1 146 aa0.23□□□□□ -2.37
VPS13A-206ENST00000376646 BET1LQ9NYM9 111 aa0.23□□□□□ -2.37
VPS13A-206ENST00000376646 CEP152O94986 1710 aa0.23□□□□□ -2.37
VPS13A-206ENST00000376646 TET3O43151 1660 aa0.23□□□□□ -2.37
VPS13A-206ENST00000376646 ZNF142P52746 1687 aaPredicted RBP0.23□□□□□ -2.37
VPS13A-206ENST00000376646 CFAP43Q8NDM7 1665 aa0.23□□□□□ -2.37
VPS13A-206ENST00000376646 DISP2A7MBM2 1401 aa0.23□□□□□ -2.37
VPS13A-206ENST00000376646 SPTBN2O15020 2390 aa0.23□□□□□ -2.37
VPS13A-206ENST00000376646 CFAP54Q96N23 3096 aa0.23□□□□□ -2.37
VPS13A-206ENST00000376646 MED13LQ71F56 2210 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 MUC12Q9UKN1 5478 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 TRAV12-2A0A075B6T6 113 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 M0R2Z0 102 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 LINC00694P0DN24 101 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 MIC13Q5XKP0 118 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 CTAGE3PQ8IX95 158 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 PPP1R1CQ8WVI7 109 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 CADP27708 2225 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 TMEM131LA2VDJ0 1609 aa0.22□□□□□ -2.37
VPS13A-206ENST00000376646 VIRMAQ69YN4 1812 aaKnown RBP0.22□□□□□ -2.37
VPS13A-206ENST00000376646 SRRM2Q9UQ35 2752 aaKnown RBP0.22□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 124.7 ms