RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 EDN2P20800 178 aa10.65□□□□□ -0.7
HMGA1-203ENST00000374116 SYNJ2BPP57105 145 aa10.65□□□□□ -0.7
HMGA1-203ENST00000374116 FOXI1Q12951 378 aa10.65□□□□□ -0.7
HMGA1-203ENST00000374116 LINC00482Q8N8I6 264 aa10.65□□□□□ -0.7
HMGA1-203ENST00000374116 RNF185Q96GF1 192 aa10.65□□□□□ -0.7
HMGA1-203ENST00000374116 DAZ1Q9NQZ3 744 aaKnown RBP10.65□□□□□ -0.7
HMGA1-203ENST00000374116 PGPEP1Q9NXJ5 209 aa10.65□□□□□ -0.7
HMGA1-203ENST00000374116 K7EMT4 169 aa10.65□□□□□ -0.71
HMGA1-203ENST00000374116 RHPN1-AS1Q9BWJ2 59 aa10.65□□□□□ -0.71
HMGA1-203ENST00000374116 APOMO95445 188 aa10.64□□□□□ -0.71
HMGA1-203ENST00000374116 NPYP01303 97 aa10.64□□□□□ -0.71
HMGA1-203ENST00000374116 FCER1GP30273 86 aa10.64□□□□□ -0.71
HMGA1-203ENST00000374116 DPM2O94777 84 aa10.63□□□□□ -0.71
HMGA1-203ENST00000374116 SPINK8P0C7L1 97 aa10.63□□□□□ -0.71
HMGA1-203ENST00000374116 RPL11P62913 178 aaKnown RBP10.63□□□□□ -0.71
HMGA1-203ENST00000374116 TRBV7-3A0A075B6L6 115 aa10.63□□□□□ -0.71
HMGA1-203ENST00000374116 IGHV4-4A0A075B6R2 117 aa10.63□□□□□ -0.71
HMGA1-203ENST00000374116 SMKR1H3BMG3 65 aa10.63□□□□□ -0.71
HMGA1-203ENST00000374116 CFAP126Q5VTH2 177 aa10.63□□□□□ -0.71
HMGA1-203ENST00000374116 Q6ZUT4 128 aa10.63□□□□□ -0.71
HMGA1-203ENST00000374116 C20orf78Q9BR46 151 aa10.63□□□□□ -0.71
HMGA1-203ENST00000374116 MAP1LC3AQ9H492 121 aa10.63□□□□□ -0.71
HMGA1-203ENST00000374116 TRBV7-9A0A0J9YWB2 115 aa10.62□□□□□ -0.71
HMGA1-203ENST00000374116 INSL3P51460 131 aa10.62□□□□□ -0.71
HMGA1-203ENST00000374116 OXLD1Q5BKU9 147 aa10.62□□□□□ -0.71
HMGA1-203ENST00000374116 SYT8Q8NBV8 401 aa10.62□□□□□ -0.71
HMGA1-203ENST00000374116 NXT2Q9NPJ8 142 aaKnown RBP10.62□□□□□ -0.71
HMGA1-203ENST00000374116 MGAM2Q2M2H8 2515 aa10.62□□□□□ -0.71
HMGA1-203ENST00000374116 TRAV21A0A0B4J279 112 aa10.61□□□□□ -0.71
HMGA1-203ENST00000374116 PRR9Q5T870 116 aa10.61□□□□□ -0.71
HMGA1-203ENST00000374116 ZFAND2AQ8N6M9 145 aa10.61□□□□□ -0.71
HMGA1-203ENST00000374116 FAM19A4Q96LR4 140 aa10.61□□□□□ -0.71
HMGA1-203ENST00000374116 UFC1Q9Y3C8 167 aa10.61□□□□□ -0.71
HMGA1-203ENST00000374116 TCTAP57738 103 aa10.61□□□□□ -0.71
HMGA1-203ENST00000374116 TNFRSF6BO95407 300 aa10.6□□□□□ -0.71
HMGA1-203ENST00000374116 ID1P41134 155 aa10.6□□□□□ -0.71
HMGA1-203ENST00000374116 NBEAL1Q6ZS30 2694 aa10.6□□□□□ -0.71
HMGA1-203ENST00000374116 ZC2HC1BQ5TFG8 222 aa10.59□□□□□ -0.71
HMGA1-203ENST00000374116 SPANXN1Q5VSR9 72 aa10.59□□□□□ -0.71
HMGA1-203ENST00000374116 APRG1Q8IVJ8 170 aa10.59□□□□□ -0.71
HMGA1-203ENST00000374116 MT-ATP8P03928 68 aa10.58□□□□□ -0.72
HMGA1-203ENST00000374116 SMCPP49901 116 aaPredicted RBP10.58□□□□□ -0.72
HMGA1-203ENST00000374116 GAGE5Q13069 117 aa10.58□□□□□ -0.72
HMGA1-203ENST00000374116 GAGE6Q13070 117 aa10.58□□□□□ -0.72
HMGA1-203ENST00000374116 MORN3Q6PF18 240 aaPredicted RBP10.58□□□□□ -0.72
HMGA1-203ENST00000374116 AMTNQ6UX39 209 aa10.58□□□□□ -0.72
HMGA1-203ENST00000374116 Q6ZQT7 251 aa10.58□□□□□ -0.72
HMGA1-203ENST00000374116 WFDC9Q8NEX5 89 aa10.58□□□□□ -0.72
HMGA1-203ENST00000374116 PPDPFLQ8WWR9 84 aa10.58□□□□□ -0.72
HMGA1-203ENST00000374116 RNF183Q96D59 192 aa10.58□□□□□ -0.72
HMGA1-203ENST00000374116 TTTY13Q9BZ97 58 aa10.58□□□□□ -0.72
HMGA1-203ENST00000374116 XGP55808 180 aa10.58□□□□□ -0.72
HMGA1-203ENST00000374116 SBSPONQ8IVN8 264 aa10.58□□□□□ -0.72
HMGA1-203ENST00000374116 IGKV3-7A0A075B6H7 116 aa10.57□□□□□ -0.72
HMGA1-203ENST00000374116 H3BVH4 76 aa10.57□□□□□ -0.72
HMGA1-203ENST00000374116 MED14OSP0DP75 135 aa10.57□□□□□ -0.72
HMGA1-203ENST00000374116 LEPP41159 167 aa10.57□□□□□ -0.72
HMGA1-203ENST00000374116 GTSCR1Q86UQ5 136 aa10.57□□□□□ -0.72
HMGA1-203ENST00000374116 J3KRW8 73 aa10.56□□□□□ -0.72
HMGA1-203ENST00000374116 LGALS9O00182 355 aa10.56□□□□□ -0.72
HMGA1-203ENST00000374116 GAS8-AS1O95177 125 aa10.56□□□□□ -0.72
HMGA1-203ENST00000374116 ASIPP42127 132 aa10.56□□□□□ -0.72
HMGA1-203ENST00000374116 FXYD7P58549 80 aa10.56□□□□□ -0.72
HMGA1-203ENST00000374116 LYRM7Q5U5X0 104 aa10.56□□□□□ -0.72
HMGA1-203ENST00000374116 MAPKAPK5-AS1Q8N8E1 139 aa10.56□□□□□ -0.72
HMGA1-203ENST00000374116 Q8N8P6 123 aa10.56□□□□□ -0.72
HMGA1-203ENST00000374116 NOTCH1P46531 2555 aa10.56□□□□□ -0.72
HMGA1-203ENST00000374116 F6UB75 175 aa10.56□□□□□ -0.72
HMGA1-203ENST00000374116 PRSS1P07477 247 aa10.56□□□□□ -0.72
HMGA1-203ENST00000374116 RNASE4P34096 147 aaKnown RBP10.56□□□□□ -0.72
HMGA1-203ENST00000374116 DEFB1P60022 68 aa10.56□□□□□ -0.72
HMGA1-203ENST00000374116 NFE4Q86UQ8 179 aa10.56□□□□□ -0.72
HMGA1-203ENST00000374116 DCANP1Q8TF63 244 aa10.56□□□□□ -0.72
HMGA1-203ENST00000374116 FAM110AQ9BQ89 295 aa10.56□□□□□ -0.72
HMGA1-203ENST00000374116 S100A4P26447 101 aaKnown RBP10.55□□□□□ -0.72
HMGA1-203ENST00000374116 PLNP26678 52 aa10.55□□□□□ -0.72
HMGA1-203ENST00000374116 TEN1Q86WV5 123 aa10.55□□□□□ -0.72
HMGA1-203ENST00000374116 HIST1H4GQ99525 98 aa10.55□□□□□ -0.72
HMGA1-203ENST00000374116 SPANXA1Q9NS26 97 aa10.55□□□□□ -0.72
HMGA1-203ENST00000374116 IGLV2-18A0A075B6J9 118 aa10.54□□□□□ -0.72
HMGA1-203ENST00000374116 A0A087WX48 190 aa10.54□□□□□ -0.72
HMGA1-203ENST00000374116 TMEM262E9PQX1 116 aa10.54□□□□□ -0.72
HMGA1-203ENST00000374116 M0QXV9 152 aa10.54□□□□□ -0.72
HMGA1-203ENST00000374116 PRB2P02812 416 aaPredicted RBP10.54□□□□□ -0.72
HMGA1-203ENST00000374116 GATA1P15976 413 aaPredicted RBP10.54□□□□□ -0.72
HMGA1-203ENST00000374116 UBE2D3P61077 147 aa10.54□□□□□ -0.72
HMGA1-203ENST00000374116 UBE2D2P62837 147 aa10.54□□□□□ -0.72
HMGA1-203ENST00000374116 ANXA2RQ3ZCQ2 193 aa10.54□□□□□ -0.72
HMGA1-203ENST00000374116 NRACQ8N912 160 aa10.54□□□□□ -0.72
HMGA1-203ENST00000374116 ANAPC13Q9BS18 74 aa10.54□□□□□ -0.72
HMGA1-203ENST00000374116 TRAV12-1A0A0B4J245 112 aa10.54□□□□□ -0.72
HMGA1-203ENST00000374116 KLLNB2CW77 178 aa10.54□□□□□ -0.72
HMGA1-203ENST00000374116 PEMTQ9UBM1 199 aa10.54□□□□□ -0.72
HMGA1-203ENST00000374116 UBE2D1P51668 147 aa10.53□□□□□ -0.72
HMGA1-203ENST00000374116 ZFAND6Q6FIF0 208 aa10.53□□□□□ -0.72
HMGA1-203ENST00000374116 PHLDA3Q9Y5J5 127 aa10.53□□□□□ -0.72
HMGA1-203ENST00000374116 MYMXA0A1B0GTQ4 84 aa10.52□□□□□ -0.73
HMGA1-203ENST00000374116 C9orf66Q5T8R8 295 aa10.52□□□□□ -0.73
HMGA1-203ENST00000374116 WFDC3Q8IUB2 231 aa10.52□□□□□ -0.73
HMGA1-203ENST00000374116 CARD19Q96LW7 228 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 341.2 ms