RNA–Protein interactions for RNA: ENST00000368309.3

UBQLN4-201, Transcript of ubiquilin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBQLN4, Length 3,576 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN4-201ENST00000368309 NF1P21359 2839 aa13.34□□□□□ -0.27
UBQLN4-201ENST00000368309 TMEM170BQ5T4T1 132 aa13.34□□□□□ -0.27
UBQLN4-201ENST00000368309 TRBV6-5A0A0K0K1A5 114 aa13.33□□□□□ -0.27
UBQLN4-201ENST00000368309 Q5PR19 223 aa13.33□□□□□ -0.27
UBQLN4-201ENST00000368309 ZNF479Q96JC4 524 aa13.33□□□□□ -0.27
UBQLN4-201ENST00000368309 PRRC2AP48634 2157 aaKnown RBP13.33□□□□□ -0.28
UBQLN4-201ENST00000368309 ZNRF2Q8NHG8 242 aa13.33□□□□□ -0.28
UBQLN4-201ENST00000368309 CHD6Q8TD26 2715 aa13.32□□□□□ -0.28
UBQLN4-201ENST00000368309 TMEM141Q96I45 108 aa13.32□□□□□ -0.28
UBQLN4-201ENST00000368309 RIPPLY3P57055 190 aa13.32□□□□□ -0.28
UBQLN4-201ENST00000368309 PROK1P58294 105 aa13.32□□□□□ -0.28
UBQLN4-201ENST00000368309 SRSF9Q13242 221 aaKnown RBP eCLIP13.32□□□□□ -0.28
UBQLN4-201ENST00000368309 TIMM17AQ99595 171 aa13.32□□□□□ -0.28
UBQLN4-201ENST00000368309 APCP25054 2843 aa13.31□□□□□ -0.28
UBQLN4-201ENST00000368309 WNK1Q9H4A3 2382 aa13.31□□□□□ -0.28
UBQLN4-201ENST00000368309 CR1P17927 2039 aa13.31□□□□□ -0.28
UBQLN4-201ENST00000368309 P0DMU3 169 aa13.31□□□□□ -0.28
UBQLN4-201ENST00000368309 FAM231AP0DMU4 169 aa13.31□□□□□ -0.28
UBQLN4-201ENST00000368309 FAM231CP0DMU5 169 aa13.31□□□□□ -0.28
UBQLN4-201ENST00000368309 TRPT1Q86TN4 253 aaKnown RBP13.31□□□□□ -0.28
UBQLN4-201ENST00000368309 Q96MF0 132 aa13.31□□□□□ -0.28
UBQLN4-201ENST00000368309 TMEM61Q8N0U2 210 aa13.3□□□□□ -0.28
UBQLN4-201ENST00000368309 NOTCH3Q9UM47 2321 aa13.3□□□□□ -0.28
UBQLN4-201ENST00000368309 ZNF843Q8N446 348 aa13.3□□□□□ -0.28
UBQLN4-201ENST00000368309 RNF152Q8N8N0 203 aa13.3□□□□□ -0.28
UBQLN4-201ENST00000368309 DEFB113Q30KQ7 82 aa13.3□□□□□ -0.28
UBQLN4-201ENST00000368309 TRGV11A0A075B6L2 103 aa13.29□□□□□ -0.28
UBQLN4-201ENST00000368309 RPL24P83731 157 aaKnown RBP13.29□□□□□ -0.28
UBQLN4-201ENST00000368309 RBMY1BA6NDE4 496 aaKnown RBP13.29□□□□□ -0.28
UBQLN4-201ENST00000368309 RBMY1EA6NEQ0 496 aaKnown RBP13.29□□□□□ -0.28
UBQLN4-201ENST00000368309 H3BMG7 143 aa13.29□□□□□ -0.28
UBQLN4-201ENST00000368309 RBMY1DP0C7P1 496 aaKnown RBP13.29□□□□□ -0.28
UBQLN4-201ENST00000368309 TSPEAR-AS2P59090 65 aa13.29□□□□□ -0.28
UBQLN4-201ENST00000368309 HERVK_113P61574 105 aa13.29□□□□□ -0.28
UBQLN4-201ENST00000368309 PAPPA-AS1Q5QFB9 102 aa13.29□□□□□ -0.28
UBQLN4-201ENST00000368309 NBPF19A0A087WUL8 3843 aa13.28□□□□□ -0.28
UBQLN4-201ENST00000368309 LINC01549A6NIU2 74 aa13.28□□□□□ -0.28
UBQLN4-201ENST00000368309 H3BMM0 161 aa13.28□□□□□ -0.28
UBQLN4-201ENST00000368309 LINC01619G3V211 115 aa13.28□□□□□ -0.28
UBQLN4-201ENST00000368309 MTURNQ8N3F0 131 aa13.28□□□□□ -0.28
UBQLN4-201ENST00000368309 Q9UF83 564 aa13.28□□□□□ -0.28
UBQLN4-201ENST00000368309 DLX4Q92988 240 aaPredicted RBP13.27□□□□□ -0.28
UBQLN4-201ENST00000368309 I3L3M4 83 aa13.27□□□□□ -0.29
UBQLN4-201ENST00000368309 RRN3P1Q2M238 152 aa13.27□□□□□ -0.29
UBQLN4-201ENST00000368309 SFTA2Q6UW10 78 aa13.27□□□□□ -0.29
UBQLN4-201ENST00000368309 C20orf203Q8NBC4 194 aa13.26□□□□□ -0.29
UBQLN4-201ENST00000368309 ITPR3Q14573 2671 aa13.26□□□□□ -0.29
UBQLN4-201ENST00000368309 G3V4G9 280 aa13.26□□□□□ -0.29
UBQLN4-201ENST00000368309 IGHV3-64A0A075B6Q5 118 aa13.26□□□□□ -0.29
UBQLN4-201ENST00000368309 WFDC2Q14508 124 aa13.26□□□□□ -0.29
UBQLN4-201ENST00000368309 NSUN5P1Q3KNT7 163 aa13.26□□□□□ -0.29
UBQLN4-201ENST00000368309 C11orf44Q8N8P7 122 aa13.26□□□□□ -0.29
UBQLN4-201ENST00000368309 PGPEP1Q9NXJ5 209 aa13.25□□□□□ -0.29
UBQLN4-201ENST00000368309 A0A0J9YY99 117 aa13.25□□□□□ -0.29
UBQLN4-201ENST00000368309 A0A1B0GWB2 263 aa13.25□□□□□ -0.29
UBQLN4-201ENST00000368309 RHOHQ15669 191 aa13.25□□□□□ -0.29
UBQLN4-201ENST00000368309 APOMO95445 188 aa13.24□□□□□ -0.29
UBQLN4-201ENST00000368309 DYNLRB2Q8TF09 96 aa13.24□□□□□ -0.29
UBQLN4-201ENST00000368309 MRPL16Q9NX20 251 aaKnown RBP13.24□□□□□ -0.29
UBQLN4-201ENST00000368309 TEX48A0A1B0GUV7 120 aa13.24□□□□□ -0.29
UBQLN4-201ENST00000368309 CEMP1Q6PRD7 247 aaPredicted RBP13.23□□□□□ -0.29
UBQLN4-201ENST00000368309 SPAG8Q99932 426 aaPredicted RBP13.23□□□□□ -0.29
UBQLN4-201ENST00000368309 PEMTQ9UBM1 199 aa13.23□□□□□ -0.29
UBQLN4-201ENST00000368309 NIPBLQ6KC79 2804 aaeCLIP13.23□□□□□ -0.29
UBQLN4-201ENST00000368309 A0A0J9YXV3 536 aa13.23□□□□□ -0.29
UBQLN4-201ENST00000368309 Q6ZSN1 163 aa13.23□□□□□ -0.29
UBQLN4-201ENST00000368309 Q8N2B8 174 aa13.23□□□□□ -0.29
UBQLN4-201ENST00000368309 J3QQQ9 107 aa13.22□□□□□ -0.29
UBQLN4-201ENST00000368309 VCX2Q9H322 139 aa13.22□□□□□ -0.29
UBQLN4-201ENST00000368309 LINC01587Q99440 93 aa13.22□□□□□ -0.29
UBQLN4-201ENST00000368309 MAP6D1Q9H9H5 199 aa13.22□□□□□ -0.29
UBQLN4-201ENST00000368309 IGLV4-3A0A075B6K6 122 aa13.21□□□□□ -0.29
UBQLN4-201ENST00000368309 RNASE13Q5GAN3 156 aaKnown RBP13.21□□□□□ -0.29
UBQLN4-201ENST00000368309 C4orf3Q8WVX3 66 aa13.21□□□□□ -0.29
UBQLN4-201ENST00000368309 AKAP9Q99996 3911 aa13.21□□□□□ -0.29
UBQLN4-201ENST00000368309 FLNAP21333 2647 aaKnown RBP13.21□□□□□ -0.29
UBQLN4-201ENST00000368309 ACANP16112 2415 aa13.21□□□□□ -0.3
UBQLN4-201ENST00000368309 TMEM238LA0A1B0GVL6 79 aa13.21□□□□□ -0.3
UBQLN4-201ENST00000368309 A6NJY4 79 aa13.21□□□□□ -0.3
UBQLN4-201ENST00000368309 LGALS3P17931 250 aaKnown RBP13.21□□□□□ -0.3
UBQLN4-201ENST00000368309 A0A1W2PRX2 142 aa13.2□□□□□ -0.3
UBQLN4-201ENST00000368309 SH2D6Q7Z4S9 175 aa13.2□□□□□ -0.3
UBQLN4-201ENST00000368309 TNFRSF18Q9Y5U5 241 aa13.2□□□□□ -0.3
UBQLN4-201ENST00000368309 M0R2P5 195 aa13.2□□□□□ -0.3
UBQLN4-201ENST00000368309 DEFB114Q30KQ6 69 aa13.2□□□□□ -0.3
UBQLN4-201ENST00000368309 NFE4Q86UQ8 179 aa13.2□□□□□ -0.3
UBQLN4-201ENST00000368309 AMELXQ99217 191 aa13.2□□□□□ -0.3
UBQLN4-201ENST00000368309 NACAE9PAV3 2078 aa13.2□□□□□ -0.3
UBQLN4-201ENST00000368309 CD28P10747 220 aa13.2□□□□□ -0.3
UBQLN4-201ENST00000368309 UBE2D1P51668 147 aa13.19□□□□□ -0.3
UBQLN4-201ENST00000368309 KRTAP1-3Q8IUG1 177 aa13.19□□□□□ -0.3
UBQLN4-201ENST00000368309 LOC107984156A0A0G2JMH3 177 aa13.19□□□□□ -0.3
UBQLN4-201ENST00000368309 F8W1H4 67 aa13.19□□□□□ -0.3
UBQLN4-201ENST00000368309 ZNF22P17026 224 aaPredicted RBP13.19□□□□□ -0.3
UBQLN4-201ENST00000368309 ETDBQ3ZM63 59 aa13.19□□□□□ -0.3
UBQLN4-201ENST00000368309 ARL17AQ8IVW1 177 aa13.19□□□□□ -0.3
UBQLN4-201ENST00000368309 SLC25A29Q8N8R3 303 aa13.19□□□□□ -0.3
UBQLN4-201ENST00000368309 TMEM223A0PJW6 202 aa13.18□□□□□ -0.3
UBQLN4-201ENST00000368309 GAGE13Q4V321 117 aa13.18□□□□□ -0.3
UBQLN4-201ENST00000368309 Q6ZSV7 163 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms