RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 ZNF747Q9BV97 191 aa8.37□□□□□ -1.07
CLIP1-203ENST00000361654 C14orf132Q9NPU4 83 aa8.37□□□□□ -1.07
CLIP1-203ENST00000361654 PROP1O75360 226 aa8.36□□□□□ -1.07
CLIP1-203ENST00000361654 RBM3P98179 157 aaKnown RBP8.36□□□□□ -1.07
CLIP1-203ENST00000361654 MED13Q9UHV7 2174 aa8.36□□□□□ -1.07
CLIP1-203ENST00000361654 REG3AQ06141 175 aa8.36□□□□□ -1.07
CLIP1-203ENST00000361654 C12orf74Q32Q52 190 aa8.36□□□□□ -1.07
CLIP1-203ENST00000361654 HEATR5AQ86XA9 2040 aa8.36□□□□□ -1.07
CLIP1-203ENST00000361654 SHANK1Q9Y566 2161 aa8.36□□□□□ -1.07
CLIP1-203ENST00000361654 LY6G6CO95867 125 aa8.36□□□□□ -1.07
CLIP1-203ENST00000361654 PDE6GP18545 87 aa8.36□□□□□ -1.07
CLIP1-203ENST00000361654 ETDBQ3ZM63 59 aa8.36□□□□□ -1.07
CLIP1-203ENST00000361654 NTN5Q8WTR8 489 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-203ENST00000361654 DEFB114Q30KQ6 69 aa8.35□□□□□ -1.07
CLIP1-203ENST00000361654 LINC01620Q4KN68 170 aa8.35□□□□□ -1.07
CLIP1-203ENST00000361654 LINC00322Q6ZN03 302 aaPredicted RBP8.35□□□□□ -1.07
CLIP1-203ENST00000361654 SPANXCQ9NY87 97 aa8.35□□□□□ -1.07
CLIP1-203ENST00000361654 Q6ZSV7 163 aa8.35□□□□□ -1.07
CLIP1-203ENST00000361654 CSPG4Q6UVK1 2322 aa8.35□□□□□ -1.07
CLIP1-203ENST00000361654 WFDC9Q8NEX5 89 aa8.35□□□□□ -1.07
CLIP1-203ENST00000361654 BAALCQ8WXS3 180 aa8.35□□□□□ -1.07
CLIP1-203ENST00000361654 ODF3Q96PU9 254 aa8.35□□□□□ -1.07
CLIP1-203ENST00000361654 K7EP13 123 aa8.35□□□□□ -1.07
CLIP1-203ENST00000361654 IGF1P05019 195 aa8.35□□□□□ -1.07
CLIP1-203ENST00000361654 PRAC2D3DTV9 90 aa8.35□□□□□ -1.07
CLIP1-203ENST00000361654 UNQ9165/PRO28630Q6UXU0 137 aa8.35□□□□□ -1.07
CLIP1-203ENST00000361654 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.35□□□□□ -1.07
CLIP1-203ENST00000361654 TRBV6-1A0A0K0K1D8 114 aa8.34□□□□□ -1.07
CLIP1-203ENST00000361654 C5orf47Q569G3 176 aa8.34□□□□□ -1.07
CLIP1-203ENST00000361654 FAM19A1Q7Z5A9 133 aa8.34□□□□□ -1.07
CLIP1-203ENST00000361654 DYSFO75923 2080 aa8.34□□□□□ -1.07
CLIP1-203ENST00000361654 CASC2Q6XLA1 102 aa8.34□□□□□ -1.07
CLIP1-203ENST00000361654 HELZP42694 1942 aaKnown RBP8.34□□□□□ -1.07
CLIP1-203ENST00000361654 K7EP34 96 aa8.34□□□□□ -1.07
CLIP1-203ENST00000361654 PLXNA4Q9HCM2 1894 aa8.34□□□□□ -1.07
CLIP1-203ENST00000361654 WNK1Q9H4A3 2382 aa8.34□□□□□ -1.07
CLIP1-203ENST00000361654 FAM110AQ9BQ89 295 aa8.34□□□□□ -1.07
CLIP1-203ENST00000361654 IGHV1-58A0A0C4DH39 117 aa8.33□□□□□ -1.08
CLIP1-203ENST00000361654 PLA2G2AP14555 144 aa8.33□□□□□ -1.08
CLIP1-203ENST00000361654 PATE2Q6UY27 113 aa8.33□□□□□ -1.08
CLIP1-203ENST00000361654 A0A1W2PPM0 123 aa8.33□□□□□ -1.08
CLIP1-203ENST00000361654 TRBV12-3P01733 135 aa8.33□□□□□ -1.08
CLIP1-203ENST00000361654 EML6Q6ZMW3 1958 aa8.33□□□□□ -1.08
CLIP1-203ENST00000361654 ODF3BA8MYP8 253 aa8.33□□□□□ -1.08
CLIP1-203ENST00000361654 FSTL3O95633 263 aa8.33□□□□□ -1.08
CLIP1-203ENST00000361654 LINC00269Q8N2A0 174 aa8.33□□□□□ -1.08
CLIP1-203ENST00000361654 RS1O15537 224 aa8.33□□□□□ -1.08
CLIP1-203ENST00000361654 Q6ZSR3 168 aa8.33□□□□□ -1.08
CLIP1-203ENST00000361654 MUSTN1Q8IVN3 82 aa8.33□□□□□ -1.08
CLIP1-203ENST00000361654 MYO18BQ8IUG5 2567 aa8.33□□□□□ -1.08
CLIP1-203ENST00000361654 K7EN84 100 aa8.32□□□□□ -1.08
CLIP1-203ENST00000361654 TECTAO75443 2155 aa8.32□□□□□ -1.08
CLIP1-203ENST00000361654 P0DMU3 169 aa8.32□□□□□ -1.08
CLIP1-203ENST00000361654 FAM231AP0DMU4 169 aa8.32□□□□□ -1.08
CLIP1-203ENST00000361654 FAM231CP0DMU5 169 aa8.32□□□□□ -1.08
CLIP1-203ENST00000361654 H7C423 109 aa8.32□□□□□ -1.08
CLIP1-203ENST00000361654 Q6ZTI0 123 aa8.32□□□□□ -1.08
CLIP1-203ENST00000361654 MIR7-3HGQ8N6C7 128 aa8.32□□□□□ -1.08
CLIP1-203ENST00000361654 ZNF706Q9Y5V0 76 aaPredicted RBP8.32□□□□□ -1.08
CLIP1-203ENST00000361654 SRCAPQ6ZRS2 3230 aa8.32□□□□□ -1.08
CLIP1-203ENST00000361654 IGKV4-1P06312 121 aa8.32□□□□□ -1.08
CLIP1-203ENST00000361654 MSRB1Q9NZV6 116 aa8.32□□□□□ -1.08
CLIP1-203ENST00000361654 MDFICQ9P1T7 246 aa8.32□□□□□ -1.08
CLIP1-203ENST00000361654 UBE2D4Q9Y2X8 147 aa8.32□□□□□ -1.08
CLIP1-203ENST00000361654 ALPK3Q96L96 1907 aa8.32□□□□□ -1.08
CLIP1-203ENST00000361654 LYPD6Q86Y78 171 aa8.32□□□□□ -1.08
CLIP1-203ENST00000361654 PLXNA2O75051 1894 aa8.32□□□□□ -1.08
CLIP1-203ENST00000361654 CHD3Q12873 2000 aaKnown RBP8.31□□□□□ -1.08
CLIP1-203ENST00000361654 TMEM256-PLSCR3K7ERE1 68 aa8.31□□□□□ -1.08
CLIP1-203ENST00000361654 LECT2O14960 151 aa8.31□□□□□ -1.08
CLIP1-203ENST00000361654 RPL39P62891 51 aaKnown RBP8.31□□□□□ -1.08
CLIP1-203ENST00000361654 C20orf203Q8NBC4 194 aa8.31□□□□□ -1.08
CLIP1-203ENST00000361654 FRMPD3Q5JV73 1810 aa8.31□□□□□ -1.08
CLIP1-203ENST00000361654 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.31□□□□□ -1.08
CLIP1-203ENST00000361654 ASPHD1Q5U4P2 390 aa8.3□□□□□ -1.08
CLIP1-203ENST00000361654 ZFAND2AQ8N6M9 145 aa8.3□□□□□ -1.08
CLIP1-203ENST00000361654 CHCHD10Q8WYQ3 142 aaPredicted RBP8.3□□□□□ -1.08
CLIP1-203ENST00000361654 H3BMG7 143 aa8.3□□□□□ -1.08
CLIP1-203ENST00000361654 TOMM6Q96B49 74 aa8.3□□□□□ -1.08
CLIP1-203ENST00000361654 ANKHD1Q8IWZ3 2542 aaKnown RBP8.3□□□□□ -1.08
CLIP1-203ENST00000361654 K7EQG2 157 aa8.3□□□□□ -1.08
CLIP1-203ENST00000361654 K7ERJ3 54 aa8.3□□□□□ -1.08
CLIP1-203ENST00000361654 A4D1N5 150 aa8.3□□□□□ -1.08
CLIP1-203ENST00000361654 YPEL4Q96NS1 127 aa8.3□□□□□ -1.08
CLIP1-203ENST00000361654 LINC00482Q8N8I6 264 aa8.29□□□□□ -1.08
CLIP1-203ENST00000361654 C11orf86A6NJI1 115 aa8.29□□□□□ -1.08
CLIP1-203ENST00000361654 PSMB8P28062 276 aa8.29□□□□□ -1.08
CLIP1-203ENST00000361654 TRBV10-2A0A0K0K1G8 114 aa8.29□□□□□ -1.08
CLIP1-203ENST00000361654 CTRLP40313 264 aa8.29□□□□□ -1.08
CLIP1-203ENST00000361654 IGLV2-18A0A075B6J9 118 aa8.29□□□□□ -1.08
CLIP1-203ENST00000361654 A0A0B4J2C4 111 aa8.29□□□□□ -1.08
CLIP1-203ENST00000361654 SYCNQ0VAF6 134 aa8.29□□□□□ -1.08
CLIP1-203ENST00000361654 PLXNB3Q9ULL4 1909 aa8.28□□□□□ -1.08
CLIP1-203ENST00000361654 SMIM20Q8N5G0 67 aa8.28□□□□□ -1.08
CLIP1-203ENST00000361654 CCDC140Q96MF4 163 aa8.28□□□□□ -1.08
CLIP1-203ENST00000361654 SORL1Q92673 2214 aa8.28□□□□□ -1.08
CLIP1-203ENST00000361654 M0R2N4 97 aa8.28□□□□□ -1.08
CLIP1-203ENST00000361654 UPK3BQ9BT76 320 aa8.28□□□□□ -1.08
CLIP1-203ENST00000361654 A0A096LNI7 61 aa8.28□□□□□ -1.08
CLIP1-203ENST00000361654 DEFB1P60022 68 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms