RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 SSNA1O43805 119 aa8.78□□□□□ -1
VPS29-201ENST00000360579 EIF4EBP3O60516 100 aaPredicted RBP8.78□□□□□ -1
VPS29-201ENST00000360579 CRIP1P50238 77 aa8.78□□□□□ -1
VPS29-201ENST00000360579 RBX1P62877 108 aa8.78□□□□□ -1
VPS29-201ENST00000360579 ZNF56Q15929 161 aa8.78□□□□□ -1
VPS29-201ENST00000360579 KRTAP26-1Q6PEX3 210 aa8.78□□□□□ -1
VPS29-201ENST00000360579 SPACA4Q8TDM5 124 aa8.78□□□□□ -1
VPS29-201ENST00000360579 HIST1H2BAQ96A08 127 aa8.78□□□□□ -1
VPS29-201ENST00000360579 NKX6-2Q9C056 277 aaPredicted RBP8.78□□□□□ -1
VPS29-201ENST00000360579 PRR27Q6MZM9 219 aa8.77□□□□□ -1.01
VPS29-201ENST00000360579 CLPSL2Q6UWE3 100 aa8.77□□□□□ -1.01
VPS29-201ENST00000360579 PLAC8Q9NZF1 115 aa8.77□□□□□ -1.01
VPS29-201ENST00000360579 TNFSF18Q9UNG2 199 aa8.77□□□□□ -1.01
VPS29-201ENST00000360579 TRBV25-1A0A075B6N4 114 aa8.76□□□□□ -1.01
VPS29-201ENST00000360579 TMSB15BA0A087X1C1 80 aa8.76□□□□□ -1.01
VPS29-201ENST00000360579 TRAV8-4A0A0B4J246 113 aa8.76□□□□□ -1.01
VPS29-201ENST00000360579 PHOX2AO14813 284 aa8.76□□□□□ -1.01
VPS29-201ENST00000360579 P01737 135 aa8.76□□□□□ -1.01
VPS29-201ENST00000360579 ATP6V0CP27449 155 aa8.76□□□□□ -1.01
VPS29-201ENST00000360579 LINC00299Q6ZSB3 139 aa8.76□□□□□ -1.01
VPS29-201ENST00000360579 VAX2Q9UIW0 290 aa8.76□□□□□ -1.01
VPS29-201ENST00000360579 UBE2G1P62253 170 aa8.75□□□□□ -1.01
VPS29-201ENST00000360579 REG3AQ06141 175 aa8.75□□□□□ -1.01
VPS29-201ENST00000360579 GAGE6Q13070 117 aa8.75□□□□□ -1.01
VPS29-201ENST00000360579 ZNF674Q2M3X9 581 aa8.75□□□□□ -1.01
VPS29-201ENST00000360579 FMC1Q96HJ9 113 aa8.75□□□□□ -1.01
VPS29-201ENST00000360579 DERL1Q9BUN8 251 aa8.75□□□□□ -1.01
VPS29-201ENST00000360579 IGLV10-54A0A075B6I4 117 aa8.74□□□□□ -1.01
VPS29-201ENST00000360579 A0A0J9YXV3 536 aa8.74□□□□□ -1.01
VPS29-201ENST00000360579 TRBV6-1A0A0K0K1D8 114 aa8.74□□□□□ -1.01
VPS29-201ENST00000360579 CHTF8P0CG12 524 aa8.74□□□□□ -1.01
VPS29-201ENST00000360579 GZMBP10144 247 aa8.74□□□□□ -1.01
VPS29-201ENST00000360579 WDR73Q6P4I2 378 aa8.74□□□□□ -1.01
VPS29-201ENST00000360579 NTM-AS1Q6ZSK4 140 aa8.74□□□□□ -1.01
VPS29-201ENST00000360579 S100ZQ8WXG8 99 aa8.74□□□□□ -1.01
VPS29-201ENST00000360579 MARVELD1Q9BSK0 173 aa8.74□□□□□ -1.01
VPS29-201ENST00000360579 NDUFA13Q9P0J0 144 aa8.74□□□□□ -1.01
VPS29-201ENST00000360579 KIF25-AS1Q9Y6Z4 181 aa8.74□□□□□ -1.01
VPS29-201ENST00000360579 F5H697 171 aa8.73□□□□□ -1.01
VPS29-201ENST00000360579 UBE2G2P60604 165 aa8.73□□□□□ -1.01
VPS29-201ENST00000360579 IQCJQ1A5X6 159 aa8.73□□□□□ -1.01
VPS29-201ENST00000360579 ZNF471Q9BX82 626 aaPredicted RBP8.73□□□□□ -1.01
VPS29-201ENST00000360579 FAM74A7A6NL05 159 aa8.72□□□□□ -1.01
VPS29-201ENST00000360579 PRR3P79522 188 aaKnown RBP8.72□□□□□ -1.01
VPS29-201ENST00000360579 REG3GQ6UW15 175 aa8.72□□□□□ -1.01
VPS29-201ENST00000360579 GTSF1Q8WW33 167 aa8.72□□□□□ -1.01
VPS29-201ENST00000360579 TCEAL7Q9BRU2 100 aa8.72□□□□□ -1.01
VPS29-201ENST00000360579 IGHV1-24A0A0C4DH33 117 aa8.71□□□□□ -1.02
VPS29-201ENST00000360579 CTXND1A0A1B0GTU2 59 aa8.71□□□□□ -1.02
VPS29-201ENST00000360579 UPK1BO75841 260 aa8.71□□□□□ -1.02
VPS29-201ENST00000360579 LTAP01374 205 aa8.71□□□□□ -1.02
VPS29-201ENST00000360579 SLPIP03973 132 aa8.71□□□□□ -1.02
VPS29-201ENST00000360579 CXCL1P09341 107 aa8.71□□□□□ -1.02
VPS29-201ENST00000360579 OR10AG1Q8NH19 301 aa8.71□□□□□ -1.02
VPS29-201ENST00000360579 GAS8-AS1O95177 125 aa8.7□□□□□ -1.02
VPS29-201ENST00000360579 SMIM17P0DL12 118 aa8.7□□□□□ -1.02
VPS29-201ENST00000360579 KRTAP10-8P60410 259 aa8.7□□□□□ -1.02
VPS29-201ENST00000360579 SPANXN1Q5VSR9 72 aa8.7□□□□□ -1.02
VPS29-201ENST00000360579 CFAP161Q6P656 301 aa8.7□□□□□ -1.02
VPS29-201ENST00000360579 AQP10Q96PS8 301 aa8.7□□□□□ -1.02
VPS29-201ENST00000360579 KRTAP9-9Q9BYP9 154 aa8.7□□□□□ -1.02
VPS29-201ENST00000360579 KRTAP9-4Q9BYQ2 154 aa8.7□□□□□ -1.02
VPS29-201ENST00000360579 A0A1B0GUV1 79 aa8.69□□□□□ -1.02
VPS29-201ENST00000360579 NDUFS6O75380 124 aaKnown RBP8.69□□□□□ -1.02
VPS29-201ENST00000360579 SPINK6Q6UWN8 80 aa8.69□□□□□ -1.02
VPS29-201ENST00000360579 SNAI2O43623 268 aa8.68□□□□□ -1.02
VPS29-201ENST00000360579 OR5AL1P0C617 328 aa8.68□□□□□ -1.02
VPS29-201ENST00000360579 RPS10P46783 165 aaKnown RBP8.68□□□□□ -1.02
VPS29-201ENST00000360579 COX6A2Q02221 97 aa8.68□□□□□ -1.02
VPS29-201ENST00000360579 ODF1Q14990 250 aa8.68□□□□□ -1.02
VPS29-201ENST00000360579 ZNF726P1Q15940 193 aa8.68□□□□□ -1.02
VPS29-201ENST00000360579 MAJINQ3KP22 176 aa8.68□□□□□ -1.02
VPS29-201ENST00000360579 C20orf203Q8NBC4 194 aa8.68□□□□□ -1.02
VPS29-201ENST00000360579 H7C1H1 209 aa8.67□□□□□ -1.02
VPS29-201ENST00000360579 FHITP49789 147 aa8.67□□□□□ -1.02
VPS29-201ENST00000360579 AP1S3Q96PC3 154 aa8.67□□□□□ -1.02
VPS29-201ENST00000360579 TMEM243Q9BU79 118 aa8.67□□□□□ -1.02
VPS29-201ENST00000360579 BORCS7-ASMTA0A0B4J1R7 106 aa8.66□□□□□ -1.02
VPS29-201ENST00000360579 IGKV2-24A0A0C4DH68 120 aa8.66□□□□□ -1.02
VPS29-201ENST00000360579 KRTAP4-8A0A0G2JLE6 195 aa8.66□□□□□ -1.02
VPS29-201ENST00000360579 AKR1C3P42330 323 aa8.66□□□□□ -1.02
VPS29-201ENST00000360579 RAB5CP51148 216 aa8.66□□□□□ -1.02
VPS29-201ENST00000360579 STPG4Q8N801 248 aa8.66□□□□□ -1.02
VPS29-201ENST00000360579 STOML3Q8TAV4 291 aa8.66□□□□□ -1.02
VPS29-201ENST00000360579 IGLV4-60A0A075B6I1 120 aa8.65□□□□□ -1.02
VPS29-201ENST00000360579 S100A9P06702 114 aaKnown RBP8.65□□□□□ -1.02
VPS29-201ENST00000360579 SULT1A2P50226 295 aa8.65□□□□□ -1.02
VPS29-201ENST00000360579 DEFA1P59665 94 aa8.65□□□□□ -1.02
VPS29-201ENST00000360579 DEFA3P59666 94 aa8.65□□□□□ -1.02
VPS29-201ENST00000360579 IFITM3Q01628 133 aa8.65□□□□□ -1.02
VPS29-201ENST00000360579 AKR1C8PQ5T2L2 129 aa8.65□□□□□ -1.02
VPS29-201ENST00000360579 LYPD6BQ8NI32 183 aa8.65□□□□□ -1.02
VPS29-201ENST00000360579 LINC00474Q9P2X8 69 aa8.65□□□□□ -1.02
VPS29-201ENST00000360579 PKIGQ9Y2B9 76 aa8.65□□□□□ -1.02
VPS29-201ENST00000360579 MUC21A0A0G2JKD1 596 aa8.64□□□□□ -1.03
VPS29-201ENST00000360579 MUC21A0A140T8X8 626 aa8.64□□□□□ -1.03
VPS29-201ENST00000360579 UBE2L6O14933 153 aa8.64□□□□□ -1.03
VPS29-201ENST00000360579 CST9LP1Q5W188 147 aa8.64□□□□□ -1.03
VPS29-201ENST00000360579 KRTAP19-1Q8IUB9 90 aa8.64□□□□□ -1.03
VPS29-201ENST00000360579 C15orf56Q8N910 161 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms