RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 V9GYY9 64 aa4.89□□□□□ -1.63
UPF2-201ENST00000356352 RLFQ13129 1914 aa4.89□□□□□ -1.63
UPF2-201ENST00000356352 DEFB131BA0A096LNP1 70 aa4.89□□□□□ -1.63
UPF2-201ENST00000356352 IGLV2-14P01704 120 aa4.89□□□□□ -1.63
UPF2-201ENST00000356352 ATP5EP56381 51 aaPredicted RBP4.89□□□□□ -1.63
UPF2-201ENST00000356352 NRGNQ92686 78 aa4.89□□□□□ -1.63
UPF2-201ENST00000356352 LYPD6Q86Y78 171 aa4.89□□□□□ -1.63
UPF2-201ENST00000356352 CACNA1DQ01668 2161 aa4.89□□□□□ -1.63
UPF2-201ENST00000356352 SDK2Q58EX2 2172 aa4.89□□□□□ -1.63
UPF2-201ENST00000356352 LINC01548A6NM66 108 aa4.89□□□□□ -1.63
UPF2-201ENST00000356352 NUPR1O60356 82 aa4.89□□□□□ -1.63
UPF2-201ENST00000356352 SVIPQ8NHG7 77 aa4.89□□□□□ -1.63
UPF2-201ENST00000356352 ZNF318Q5VUA4 2279 aa4.88□□□□□ -1.63
UPF2-201ENST00000356352 A0A087WZ39 114 aa4.88□□□□□ -1.63
UPF2-201ENST00000356352 IGKV2D-26A0A0A0MRZ7 120 aa4.88□□□□□ -1.63
UPF2-201ENST00000356352 IGHV4-31P0DP07 118 aa4.88□□□□□ -1.63
UPF2-201ENST00000356352 FAM222AQ5U5X8 452 aa4.88□□□□□ -1.63
UPF2-201ENST00000356352 INTS1Q8N201 2190 aaKnown RBP4.88□□□□□ -1.63
UPF2-201ENST00000356352 FER1L5A0AVI2 2057 aa4.88□□□□□ -1.63
UPF2-201ENST00000356352 TRBV6-4A0A1B0GX49 114 aa4.88□□□□□ -1.63
UPF2-201ENST00000356352 G3V4G9 280 aa4.88□□□□□ -1.63
UPF2-201ENST00000356352 K7EQG2 157 aa4.88□□□□□ -1.63
UPF2-201ENST00000356352 SPRY4Q9C004 299 aa4.88□□□□□ -1.63
UPF2-201ENST00000356352 TRAV10A0A0B4J240 114 aa4.88□□□□□ -1.63
UPF2-201ENST00000356352 A0A1B0GXF2 115 aa4.88□□□□□ -1.63
UPF2-201ENST00000356352 DEFB114Q30KQ6 69 aa4.88□□□□□ -1.63
UPF2-201ENST00000356352 Q6ZTI0 123 aa4.88□□□□□ -1.63
UPF2-201ENST00000356352 TNRC6AQ8NDV7 1962 aaKnown RBP4.88□□□□□ -1.63
UPF2-201ENST00000356352 LINC00322Q6ZN03 302 aaPredicted RBP4.88□□□□□ -1.63
UPF2-201ENST00000356352 ALPK2Q86TB3 2170 aa4.87□□□□□ -1.63
UPF2-201ENST00000356352 PHF3Q92576 2039 aaKnown RBP4.87□□□□□ -1.63
UPF2-201ENST00000356352 TRIOBPQ9H2D6 2365 aa4.87□□□□□ -1.63
UPF2-201ENST00000356352 IGLC6P0CF74 106 aa4.87□□□□□ -1.63
UPF2-201ENST00000356352 DHRS4-AS1Q9P1J3 65 aa4.87□□□□□ -1.63
UPF2-201ENST00000356352 TMEM223A0PJW6 202 aa4.87□□□□□ -1.63
UPF2-201ENST00000356352 TCL1BO95988 128 aa4.87□□□□□ -1.63
UPF2-201ENST00000356352 UBE2D1P51668 147 aa4.87□□□□□ -1.63
UPF2-201ENST00000356352 NEXN-AS1Q8NBZ9 246 aa4.87□□□□□ -1.63
UPF2-201ENST00000356352 MYLKQ15746 1914 aa4.87□□□□□ -1.63
UPF2-201ENST00000356352 IGKV1D-37A0A075B6S9 117 aa4.87□□□□□ -1.63
UPF2-201ENST00000356352 FAM186AA6NE01 2351 aa4.87□□□□□ -1.63
UPF2-201ENST00000356352 LMO4P61968 165 aa4.87□□□□□ -1.63
UPF2-201ENST00000356352 MUC7Q8TAX7 377 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 FAM236DA0A1B0GTK5 79 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 E7EUB6 86 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 UQCRQO14949 82 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 FAM236CP0DP71 79 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 LINC00467Q9BRT7 94 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 C11orf1Q9H5F2 150 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 PI4KAP42356 2102 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 TRBV6-8A0A0A6YYG3 113 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 NDUFC1O43677 76 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 P0C879 139 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 P0DMU3 169 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 FAM231AP0DMU4 169 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 FAM231CP0DMU5 169 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 SYCNQ0VAF6 134 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 BRK1Q8WUW1 75 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 RTTNQ86VV8 2226 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 TRAV23DV6A0A075B6W5 121 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 TTTY13Q9BZ97 58 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 TIMM17BO60830 172 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 CDPF1Q6NVV7 123 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 CEMP1Q6PRD7 247 aaPredicted RBP4.86□□□□□ -1.63
UPF2-201ENST00000356352 MRPL55Q7Z7F7 128 aaKnown RBP4.86□□□□□ -1.63
UPF2-201ENST00000356352 TP53TG3Q9ULZ0 132 aa4.86□□□□□ -1.63
UPF2-201ENST00000356352 KIAA2026Q5HYC2 2103 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 NDUFC2-KCTD14E9PQ53 114 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 PLXND1Q9Y4D7 1925 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 CFAP126Q5VTH2 177 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 Q8NA96 180 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 PLA2G2EQ9NZK7 142 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 LINC00474Q9P2X8 69 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 ZDBF2Q9HCK1 2354 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 DEFB1P60022 68 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 EBI3Q14213 229 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 C3orf22Q8N5N4 141 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 SPTSSBQ8NFR3 76 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 LINC00308Q8TCZ7 52 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 PYGO1Q9Y3Y4 419 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 HELZP42694 1942 aaKnown RBP4.85□□□□□ -1.63
UPF2-201ENST00000356352 IGLV4-3A0A075B6K6 122 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 TRBV30A0A0K0K1B3 111 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 FAM240AA0A1B0GVK7 77 aa4.85□□□□□ -1.63
UPF2-201ENST00000356352 ZNF80P51504 273 aaPredicted RBP4.85□□□□□ -1.63
UPF2-201ENST00000356352 FAM19A5Q7Z5A7 132 aaPredicted RBP4.85□□□□□ -1.63
UPF2-201ENST00000356352 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.85□□□□□ -1.63
UPF2-201ENST00000356352 ZNF22P17026 224 aaPredicted RBP4.84□□□□□ -1.63
UPF2-201ENST00000356352 TDRG1Q3Y452 100 aa4.84□□□□□ -1.63
UPF2-201ENST00000356352 M0R378 163 aa4.84□□□□□ -1.63
UPF2-201ENST00000356352 PLA2G5P39877 138 aa4.84□□□□□ -1.63
UPF2-201ENST00000356352 ARFGEF3Q5TH69 2177 aa4.84□□□□□ -1.63
UPF2-201ENST00000356352 EML6Q6ZMW3 1958 aa4.84□□□□□ -1.63
UPF2-201ENST00000356352 TNRC6BQ9UPQ9 1833 aaKnown RBP4.84□□□□□ -1.63
UPF2-201ENST00000356352 LOC107984640A0A0U1RRK4 108 aa4.84□□□□□ -1.64
UPF2-201ENST00000356352 LRCOL1A6NCL2 159 aa4.84□□□□□ -1.64
UPF2-201ENST00000356352 HEATR5AQ86XA9 2040 aa4.84□□□□□ -1.64
UPF2-201ENST00000356352 COX17Q14061 63 aa4.83□□□□□ -1.64
UPF2-201ENST00000356352 WFDC11Q8NEX6 87 aa4.83□□□□□ -1.64
UPF2-201ENST00000356352 IGLV4-69A0A075B6H9 119 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms