RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 CD300EQ496F6 205 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-201ENST00000351487 TMEM61Q8N0U2 210 aa16.25■□□□□ 0.19
UPF3A-201ENST00000351487 SPAG8Q99932 426 aaPredicted RBP16.25■□□□□ 0.19
UPF3A-201ENST00000351487 CENPEQ02224 2701 aa16.25■□□□□ 0.19
UPF3A-201ENST00000351487 RBMY1BA6NDE4 496 aaKnown RBP16.25■□□□□ 0.19
UPF3A-201ENST00000351487 RBMY1EA6NEQ0 496 aaKnown RBP16.25■□□□□ 0.19
UPF3A-201ENST00000351487 RBMY1DP0C7P1 496 aaKnown RBP16.25■□□□□ 0.19
UPF3A-201ENST00000351487 RNF151Q2KHN1 245 aa16.25■□□□□ 0.19
UPF3A-201ENST00000351487 I3L3M4 83 aa16.24■□□□□ 0.19
UPF3A-201ENST00000351487 P0DMU3 169 aa16.24■□□□□ 0.19
UPF3A-201ENST00000351487 FAM231AP0DMU4 169 aa16.24■□□□□ 0.19
UPF3A-201ENST00000351487 FAM231CP0DMU5 169 aa16.24■□□□□ 0.19
UPF3A-201ENST00000351487 EMP1P54849 157 aa16.24■□□□□ 0.19
UPF3A-201ENST00000351487 SCGB2A2Q13296 93 aa16.24■□□□□ 0.19
UPF3A-201ENST00000351487 C20orf203Q8NBC4 194 aa16.23■□□□□ 0.19
UPF3A-201ENST00000351487 ZNRF2Q8NHG8 242 aa16.23■□□□□ 0.19
UPF3A-201ENST00000351487 ZNF479Q96JC4 524 aa16.23■□□□□ 0.19
UPF3A-201ENST00000351487 ABCA12Q86UK0 2595 aa16.23■□□□□ 0.19
UPF3A-201ENST00000351487 PIK3CD-AS1Q5SR53 167 aa16.22■□□□□ 0.19
UPF3A-201ENST00000351487 NFE4Q86UQ8 179 aa16.22■□□□□ 0.19
UPF3A-201ENST00000351487 TMEM86BQ8N661 226 aa16.22■□□□□ 0.19
UPF3A-201ENST00000351487 PLEKHB2Q96CS7 222 aa16.22■□□□□ 0.19
UPF3A-201ENST00000351487 SCGB1D4Q6XE38 83 aa16.22■□□□□ 0.19
UPF3A-201ENST00000351487 KLHL30-AS1Q8NEE0 82 aa16.21■□□□□ 0.18
UPF3A-201ENST00000351487 DLX4Q92988 240 aaPredicted RBP16.21■□□□□ 0.18
UPF3A-201ENST00000351487 MAP6D1Q9H9H5 199 aa16.21■□□□□ 0.18
UPF3A-201ENST00000351487 TEX15Q9BXT5 2789 aa16.2■□□□□ 0.18
UPF3A-201ENST00000351487 RRN3P1Q2M238 152 aa16.2■□□□□ 0.18
UPF3A-201ENST00000351487 DUX3Q96PT4 197 aa16.2■□□□□ 0.18
UPF3A-201ENST00000351487 SAP30O75446 220 aa16.19■□□□□ 0.18
UPF3A-201ENST00000351487 TMEM170BQ5T4T1 132 aa16.19■□□□□ 0.18
UPF3A-201ENST00000351487 PTH2Q96A98 100 aa16.19■□□□□ 0.18
UPF3A-201ENST00000351487 NACAE9PAV3 2078 aa16.19■□□□□ 0.18
UPF3A-201ENST00000351487 M0R2P5 195 aa16.19■□□□□ 0.18
UPF3A-201ENST00000351487 DYNLRB2Q8TF09 96 aa16.19■□□□□ 0.18
UPF3A-201ENST00000351487 TMEM238LA0A1B0GVL6 79 aa16.18■□□□□ 0.18
UPF3A-201ENST00000351487 A6NJY4 79 aa16.18■□□□□ 0.18
UPF3A-201ENST00000351487 A8MWV9 139 aa16.18■□□□□ 0.18
UPF3A-201ENST00000351487 KHDC1LQ5JSQ8 128 aa16.18■□□□□ 0.18
UPF3A-201ENST00000351487 LINC00467Q9BRT7 94 aa16.18■□□□□ 0.18
UPF3A-201ENST00000351487 A0A0J9YY99 117 aa16.18■□□□□ 0.18
UPF3A-201ENST00000351487 PCP4P48539 62 aa16.18■□□□□ 0.18
UPF3A-201ENST00000351487 TSPEAR-AS2P59090 65 aa16.18■□□□□ 0.18
UPF3A-201ENST00000351487 ZNF415Q09FC8 603 aa16.18■□□□□ 0.18
UPF3A-201ENST00000351487 DEFB114Q30KQ6 69 aa16.18■□□□□ 0.18
UPF3A-201ENST00000351487 HTN1P15515 57 aa16.17■□□□□ 0.18
UPF3A-201ENST00000351487 OPRPNQ99935 248 aaPredicted RBP16.17■□□□□ 0.18
UPF3A-201ENST00000351487 VPS25Q9BRG1 176 aa16.17■□□□□ 0.18
UPF3A-201ENST00000351487 MYO9AB2RTY4 2548 aa16.17■□□□□ 0.18
UPF3A-201ENST00000351487 UBE2D1P51668 147 aa16.16■□□□□ 0.18
UPF3A-201ENST00000351487 SPANXB1Q9NS25 103 aaPredicted RBP16.16■□□□□ 0.18
UPF3A-201ENST00000351487 SRSF9Q13242 221 aaKnown RBP eCLIP16.15■□□□□ 0.18
UPF3A-201ENST00000351487 Q6ZSV7 163 aa16.15■□□□□ 0.18
UPF3A-201ENST00000351487 TEX29Q8N6K0 151 aa16.15■□□□□ 0.18
UPF3A-201ENST00000351487 AMELXQ99217 191 aa16.15■□□□□ 0.18
UPF3A-201ENST00000351487 IGLV4-3A0A075B6K6 122 aa16.15■□□□□ 0.18
UPF3A-201ENST00000351487 PYGO1Q9Y3Y4 419 aa16.14■□□□□ 0.17
UPF3A-201ENST00000351487 J3QQQ9 107 aa16.14■□□□□ 0.17
UPF3A-201ENST00000351487 C11orf72Q8NBR9 251 aa16.14■□□□□ 0.17
UPF3A-201ENST00000351487 RAX2Q96IS3 184 aa16.14■□□□□ 0.17
UPF3A-201ENST00000351487 IGHV3-73A0A0B4J1V6 119 aa16.13■□□□□ 0.17
UPF3A-201ENST00000351487 TMEM223A0PJW6 202 aa16.13■□□□□ 0.17
UPF3A-201ENST00000351487 G3V4G9 280 aa16.13■□□□□ 0.17
UPF3A-201ENST00000351487 PROK1P58294 105 aa16.13■□□□□ 0.17
UPF3A-201ENST00000351487 CLUHP3Q96NS8 147 aa16.13■□□□□ 0.17
UPF3A-201ENST00000351487 PRM2P04554 102 aa16.12■□□□□ 0.17
UPF3A-201ENST00000351487 ZNF22P17026 224 aaPredicted RBP16.11■□□□□ 0.17
UPF3A-201ENST00000351487 SLC25A29Q8N8R3 303 aa16.11■□□□□ 0.17
UPF3A-201ENST00000351487 VCX2Q9H322 139 aa16.11■□□□□ 0.17
UPF3A-201ENST00000351487 F8W1H4 67 aa16.11■□□□□ 0.17
UPF3A-201ENST00000351487 LEPROTO15243 131 aa16.11■□□□□ 0.17
UPF3A-201ENST00000351487 INSP01308 110 aa16.11■□□□□ 0.17
UPF3A-201ENST00000351487 CRYBA4P53673 196 aa16.11■□□□□ 0.17
UPF3A-201ENST00000351487 CFAP126Q5VTH2 177 aa16.11■□□□□ 0.17
UPF3A-201ENST00000351487 DNAJC9-AS1A6NH13 148 aa16.1■□□□□ 0.17
UPF3A-201ENST00000351487 RHODO00212 210 aa16.1■□□□□ 0.17
UPF3A-201ENST00000351487 LGALS3P17931 250 aaKnown RBP16.1■□□□□ 0.17
UPF3A-201ENST00000351487 SPXQ9BT56 116 aa16.1■□□□□ 0.17
UPF3A-201ENST00000351487 TNFRSF18Q9Y5U5 241 aa16.1■□□□□ 0.17
UPF3A-201ENST00000351487 TRAV25A0A0B4J276 109 aa16.1■□□□□ 0.17
UPF3A-201ENST00000351487 LINC01587Q99440 93 aa16.1■□□□□ 0.17
UPF3A-201ENST00000351487 PGPEP1Q9NXJ5 209 aa16.1■□□□□ 0.17
UPF3A-201ENST00000351487 APCP25054 2843 aa16.09■□□□□ 0.17
UPF3A-201ENST00000351487 IGHV3-30P01768 117 aa16.09■□□□□ 0.17
UPF3A-201ENST00000351487 IGHV3-30-5P0DP03 117 aa16.09■□□□□ 0.17
UPF3A-201ENST00000351487 FHL3Q13643 280 aa16.09■□□□□ 0.17
UPF3A-201ENST00000351487 BEAN1Q3B7T3 259 aa16.09■□□□□ 0.17
UPF3A-201ENST00000351487 FAM104AQ969W3 186 aa16.09■□□□□ 0.17
UPF3A-201ENST00000351487 CD28P10747 220 aa16.09■□□□□ 0.17
UPF3A-201ENST00000351487 WFDC11Q8NEX6 87 aa16.08■□□□□ 0.16
UPF3A-201ENST00000351487 A0A0J9YXV3 536 aa16.07■□□□□ 0.16
UPF3A-201ENST00000351487 H3BMG7 143 aa16.07■□□□□ 0.16
UPF3A-201ENST00000351487 ITPR3Q14573 2671 aa16.07■□□□□ 0.16
UPF3A-201ENST00000351487 ODF3L2Q3SX64 289 aa16.07■□□□□ 0.16
UPF3A-201ENST00000351487 HIST2H2BDQ6DRA6 164 aa16.07■□□□□ 0.16
UPF3A-201ENST00000351487 Q6ZSN1 163 aa16.07■□□□□ 0.16
UPF3A-201ENST00000351487 MRPL16Q9NX20 251 aaKnown RBP16.07■□□□□ 0.16
UPF3A-201ENST00000351487 TLN2Q9Y4G6 2542 aa16.07■□□□□ 0.16
UPF3A-201ENST00000351487 IGHV3-53P01767 116 aa16.07■□□□□ 0.16
UPF3A-201ENST00000351487 MRPS36P82909 103 aaKnown RBP16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms