RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 NRACQ8N912 160 aa9.56□□□□□ -0.88
CLK3-201ENST00000345005 ZNF479Q96JC4 524 aa9.56□□□□□ -0.88
CLK3-201ENST00000345005 HIST1H4GQ99525 98 aa9.56□□□□□ -0.88
CLK3-201ENST00000345005 NSD1Q96L73 2696 aaPredicted RBP9.56□□□□□ -0.88
CLK3-201ENST00000345005 SORL1Q92673 2214 aa9.56□□□□□ -0.88
CLK3-201ENST00000345005 IGKV3D-20A0A0C4DH25 116 aa9.55□□□□□ -0.88
CLK3-201ENST00000345005 SPANXN1Q5VSR9 72 aa9.55□□□□□ -0.88
CLK3-201ENST00000345005 DYNLRB2Q8TF09 96 aa9.55□□□□□ -0.88
CLK3-201ENST00000345005 NAA38Q9BRA0 125 aaKnown RBP9.55□□□□□ -0.88
CLK3-201ENST00000345005 MRPL35Q9NZE8 188 aaKnown RBP9.55□□□□□ -0.88
CLK3-201ENST00000345005 TRAV21A0A0B4J279 112 aa9.54□□□□□ -0.88
CLK3-201ENST00000345005 MED14OSP0DP75 135 aa9.54□□□□□ -0.88
CLK3-201ENST00000345005 LYRM7Q5U5X0 104 aa9.54□□□□□ -0.88
CLK3-201ENST00000345005 HIST2H2BDQ6DRA6 164 aa9.54□□□□□ -0.88
CLK3-201ENST00000345005 APRG1Q8IVJ8 170 aa9.54□□□□□ -0.88
CLK3-201ENST00000345005 MYMXA0A1B0GTQ4 84 aa9.54□□□□□ -0.88
CLK3-201ENST00000345005 CRLF1O75462 422 aa9.54□□□□□ -0.88
CLK3-201ENST00000345005 DUSP14O95147 198 aaKnown RBP9.54□□□□□ -0.88
CLK3-201ENST00000345005 TCTAP57738 103 aa9.54□□□□□ -0.88
CLK3-201ENST00000345005 DEFB114Q30KQ6 69 aa9.54□□□□□ -0.88
CLK3-201ENST00000345005 GAGE13Q4V321 117 aa9.54□□□□□ -0.88
CLK3-201ENST00000345005 PAPPA-AS1Q5QFB9 102 aa9.54□□□□□ -0.88
CLK3-201ENST00000345005 ODF3Q96PU9 254 aa9.54□□□□□ -0.88
CLK3-201ENST00000345005 SMIM2Q9BVW6 85 aa9.54□□□□□ -0.88
CLK3-201ENST00000345005 C11orf21Q9P2W6 132 aa9.54□□□□□ -0.88
CLK3-201ENST00000345005 C2CD3Q4AC94 2353 aa9.53□□□□□ -0.88
CLK3-201ENST00000345005 AGRNO00468 2067 aa9.53□□□□□ -0.88
CLK3-201ENST00000345005 A0A0J9YX75 114 aa9.53□□□□□ -0.88
CLK3-201ENST00000345005 M0R381 172 aa9.53□□□□□ -0.88
CLK3-201ENST00000345005 RNASE4P34096 147 aaKnown RBP9.53□□□□□ -0.88
CLK3-201ENST00000345005 RRN3P1Q2M238 152 aa9.53□□□□□ -0.88
CLK3-201ENST00000345005 PRR9Q5T870 116 aa9.53□□□□□ -0.88
CLK3-201ENST00000345005 TOMM6Q96B49 74 aa9.53□□□□□ -0.88
CLK3-201ENST00000345005 SPAG8Q99932 426 aaPredicted RBP9.53□□□□□ -0.88
CLK3-201ENST00000345005 TRAV25A0A0B4J276 109 aa9.52□□□□□ -0.89
CLK3-201ENST00000345005 J3KRW8 73 aa9.52□□□□□ -0.89
CLK3-201ENST00000345005 TMEM61Q8N0U2 210 aa9.52□□□□□ -0.89
CLK3-201ENST00000345005 CUBNO60494 3623 aa9.52□□□□□ -0.89
CLK3-201ENST00000345005 SCGB3A1Q96QR1 104 aa9.52□□□□□ -0.89
CLK3-201ENST00000345005 TRBV7-3A0A075B6L6 115 aa9.51□□□□□ -0.89
CLK3-201ENST00000345005 KLLNB2CW77 178 aa9.51□□□□□ -0.89
CLK3-201ENST00000345005 GATA1P15976 413 aaPredicted RBP9.5□□□□□ -0.89
CLK3-201ENST00000345005 SUMO2P61956 95 aaKnown RBP9.5□□□□□ -0.89
CLK3-201ENST00000345005 RPL32P62910 135 aaKnown RBP9.5□□□□□ -0.89
CLK3-201ENST00000345005 DPH3P1Q9H4G8 78 aa9.5□□□□□ -0.89
CLK3-201ENST00000345005 FN1P02751 2386 aaKnown RBP9.5□□□□□ -0.89
CLK3-201ENST00000345005 ADARB2-AS1A8MUL3 147 aa9.49□□□□□ -0.89
CLK3-201ENST00000345005 H3BMG7 143 aa9.49□□□□□ -0.89
CLK3-201ENST00000345005 K7ERJ3 54 aa9.49□□□□□ -0.89
CLK3-201ENST00000345005 GAS8-AS1O95177 125 aa9.49□□□□□ -0.89
CLK3-201ENST00000345005 NSUN5P1Q3KNT7 163 aa9.49□□□□□ -0.89
CLK3-201ENST00000345005 Q6ZQT7 251 aa9.49□□□□□ -0.89
CLK3-201ENST00000345005 NDUFA11Q86Y39 141 aa9.49□□□□□ -0.89
CLK3-201ENST00000345005 MAPKAPK5-AS1Q8N8E1 139 aa9.49□□□□□ -0.89
CLK3-201ENST00000345005 NEXN-AS1Q8NBZ9 246 aa9.49□□□□□ -0.89
CLK3-201ENST00000345005 PGPEP1Q9NXJ5 209 aa9.49□□□□□ -0.89
CLK3-201ENST00000345005 ERG28Q9UKR5 140 aa9.49□□□□□ -0.89
CLK3-201ENST00000345005 DEFB131AP59861 70 aa9.49□□□□□ -0.89
CLK3-201ENST00000345005 HERVK_113P61574 105 aa9.48□□□□□ -0.89
CLK3-201ENST00000345005 GAGE5Q13069 117 aa9.48□□□□□ -0.89
CLK3-201ENST00000345005 GAGE6Q13070 117 aa9.48□□□□□ -0.89
CLK3-201ENST00000345005 ASIPP42127 132 aa9.47□□□□□ -0.89
CLK3-201ENST00000345005 WFDC2Q14508 124 aa9.47□□□□□ -0.89
CLK3-201ENST00000345005 ANXA2RQ3ZCQ2 193 aa9.47□□□□□ -0.89
CLK3-201ENST00000345005 TTTY13Q9BZ97 58 aa9.47□□□□□ -0.89
CLK3-201ENST00000345005 PRO0461Q9UI25 63 aa9.47□□□□□ -0.89
CLK3-201ENST00000345005 TMEM262E9PQX1 116 aa9.47□□□□□ -0.89
CLK3-201ENST00000345005 IGKV3-20P01619 116 aa9.47□□□□□ -0.89
CLK3-201ENST00000345005 S100A4P26447 101 aaKnown RBP9.47□□□□□ -0.89
CLK3-201ENST00000345005 FAM159AQ6UWV7 190 aa9.47□□□□□ -0.89
CLK3-201ENST00000345005 ZNF256Q9Y2P7 627 aaPredicted RBP9.47□□□□□ -0.89
CLK3-201ENST00000345005 TRAV12-3A0A0B4J271 114 aa9.46□□□□□ -0.9
CLK3-201ENST00000345005 A8MTW9 85 aa9.46□□□□□ -0.9
CLK3-201ENST00000345005 KRTAP10-3P60369 221 aa9.46□□□□□ -0.9
CLK3-201ENST00000345005 FOXI1Q12951 378 aa9.46□□□□□ -0.9
CLK3-201ENST00000345005 POM121L12Q8N7R1 296 aa9.46□□□□□ -0.9
CLK3-201ENST00000345005 MAP6D1Q9H9H5 199 aa9.46□□□□□ -0.9
CLK3-201ENST00000345005 PHLDA3Q9Y5J5 127 aa9.46□□□□□ -0.9
CLK3-201ENST00000345005 DNHD1Q96M86 4753 aa9.45□□□□□ -0.9
CLK3-201ENST00000345005 TRBV20-1A0A075B6N2 111 aa9.45□□□□□ -0.9
CLK3-201ENST00000345005 KNCNA6PVL3 124 aa9.45□□□□□ -0.9
CLK3-201ENST00000345005 H3BMM0 161 aa9.45□□□□□ -0.9
CLK3-201ENST00000345005 H3BVH4 76 aa9.45□□□□□ -0.9
CLK3-201ENST00000345005 AMTNQ6UX39 209 aa9.45□□□□□ -0.9
CLK3-201ENST00000345005 TMEM141Q96I45 108 aa9.45□□□□□ -0.9
CLK3-201ENST00000345005 C1QTNF4Q9BXJ3 329 aa9.45□□□□□ -0.9
CLK3-201ENST00000345005 SPINK8P0C7L1 97 aa9.45□□□□□ -0.9
CLK3-201ENST00000345005 CMC4P56277 68 aaPredicted RBP9.45□□□□□ -0.9
CLK3-201ENST00000345005 SPINK13Q1W4C9 94 aa9.45□□□□□ -0.9
CLK3-201ENST00000345005 ETDBQ3ZM63 59 aa9.45□□□□□ -0.9
CLK3-201ENST00000345005 C2orf66Q6UXQ4 117 aa9.45□□□□□ -0.9
CLK3-201ENST00000345005 FAM110AQ9BQ89 295 aa9.45□□□□□ -0.9
CLK3-201ENST00000345005 TRAV26-2A0A0B4J265 109 aa9.44□□□□□ -0.9
CLK3-201ENST00000345005 GNRH2O43555 120 aa9.44□□□□□ -0.9
CLK3-201ENST00000345005 SRSF9Q13242 221 aaKnown RBP eCLIP9.44□□□□□ -0.9
CLK3-201ENST00000345005 SCGB1D4Q6XE38 83 aa9.44□□□□□ -0.9
CLK3-201ENST00000345005 BAALCQ8WXS3 180 aa9.44□□□□□ -0.9
CLK3-201ENST00000345005 RASL10AQ92737 203 aa9.44□□□□□ -0.9
CLK3-201ENST00000345005 TRAV12-2A0A075B6T6 113 aa9.43□□□□□ -0.9
CLK3-201ENST00000345005 APOMO95445 188 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms