RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 ZFAND3Q9H8U3 227 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 DSCR8Q96T75 97 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 C15orf65H3BRN8 121 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 CRIP2P52943 208 aaPredicted RBP2.78□□□□□ -1.96
SYNE1-201ENST00000341594 FAM19A5Q7Z5A7 132 aaPredicted RBP2.78□□□□□ -1.96
SYNE1-201ENST00000341594 Q9UF83 564 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 CLEC2BQ92478 149 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 TRIP6Q15654 476 aaKnown RBP2.78□□□□□ -1.96
SYNE1-201ENST00000341594 RCHY1Q96PM5 261 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 C15orf61A6NNL5 157 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 C12orf74Q32Q52 190 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 NBL1P41271 181 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 CXXC4Q9H2H0 198 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 LINC00473A8K010 186 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 A0A096LNI7 61 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 CCL21O00585 134 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 DDB2Q92466 427 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 TRBV7-7A0A0K0K1E9 115 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 FAM104BQ5XKR9 115 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 TCRBV4S1A1TA0A5B7 111 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 HHLA3Q9XRX5 114 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 IGHV4OR15-8A0A075B7B6 117 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 A0A087WW49 117 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 FGF6P10767 208 aa2.78□□□□□ -1.96
SYNE1-201ENST00000341594 GFRA3O60609 400 aa2.78□□□□□ -1.97
SYNE1-201ENST00000341594 LINC00528Q8N1L1 170 aa2.78□□□□□ -1.97
SYNE1-201ENST00000341594 BRI3O95415 125 aa2.78□□□□□ -1.97
SYNE1-201ENST00000341594 Q8N8P6 123 aa2.78□□□□□ -1.97
SYNE1-201ENST00000341594 TRBV19A0A075B6N1 114 aa2.77□□□□□ -1.97
SYNE1-201ENST00000341594 SNRPD3P62318 126 aaKnown RBP2.77□□□□□ -1.97
SYNE1-201ENST00000341594 KLK9Q9UKQ9 250 aa2.77□□□□□ -1.97
SYNE1-201ENST00000341594 Q9HAA7 133 aa2.77□□□□□ -1.97
SYNE1-201ENST00000341594 CHD9Q3L8U1 2897 aa2.77□□□□□ -1.97
SYNE1-201ENST00000341594 SRRM4A7MD48 611 aaKnown RBP2.77□□□□□ -1.97
SYNE1-201ENST00000341594 NDUFS7O75251 213 aa2.77□□□□□ -1.97
SYNE1-201ENST00000341594 CMC4P56277 68 aaPredicted RBP2.77□□□□□ -1.97
SYNE1-201ENST00000341594 SLC25A45Q8N413 288 aa2.77□□□□□ -1.97
SYNE1-201ENST00000341594 C19orf71A6NCJ1 209 aa2.77□□□□□ -1.97
SYNE1-201ENST00000341594 PRAC2D3DTV9 90 aa2.77□□□□□ -1.97
SYNE1-201ENST00000341594 LTAP01374 205 aa2.77□□□□□ -1.97
SYNE1-201ENST00000341594 EFNA4P52798 201 aa2.77□□□□□ -1.97
SYNE1-201ENST00000341594 IGLL5B9A064 214 aa2.77□□□□□ -1.97
SYNE1-201ENST00000341594 SNURFQ9Y675 71 aa2.77□□□□□ -1.97
SYNE1-201ENST00000341594 BAALC-AS2P0C853 105 aa2.77□□□□□ -1.97
SYNE1-201ENST00000341594 LINC00312Q9Y6C7 94 aa2.77□□□□□ -1.97
SYNE1-201ENST00000341594 RHOHQ15669 191 aa2.77□□□□□ -1.97
SYNE1-201ENST00000341594 COX7A2LO14548 114 aa2.77□□□□□ -1.97
SYNE1-201ENST00000341594 RPL27AP46776 148 aaKnown RBP2.77□□□□□ -1.97
SYNE1-201ENST00000341594 NTN5Q8WTR8 489 aaPredicted RBP2.77□□□□□ -1.97
SYNE1-201ENST00000341594 TP53TG1Q9Y2A0 90 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 ZNF883P0CG24 379 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 A0A087X002 238 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 COX7CP15954 63 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 TRBV30A0A0K0K1B3 111 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 NF1P21359 2839 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 IGKV1D-33P01593 117 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 IGKV1-33P01594 117 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 DEFB136Q30KP8 78 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 PMS2P5A8MQ11 134 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 SERP2Q8N6R1 65 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 UNC79Q9P2D8 2635 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 C12orf77C9JDV5 145 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 KLK9Q2XQG4 91 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 IGKV1-5P01602 117 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 IMMP1LQ96LU5 166 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 SMIM2Q9BVW6 85 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 SEC61BP60468 96 aaKnown RBP2.76□□□□□ -1.97
SYNE1-201ENST00000341594 C10orf142B7Z368 130 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 PAX4O43316 350 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 CALYQ9NYX4 217 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 TP53TG3Q9ULZ0 132 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 HECTD1Q9ULT8 2610 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 CASC2Q6XLA1 102 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 CFC1BP0CG36 223 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 CFC1P0CG37 223 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 TMEM167AQ8TBQ9 72 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 A0A087WX48 190 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 KAAG1Q9UBP8 84 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 C20orf197Q8N268 126 aa2.76□□□□□ -1.97
SYNE1-201ENST00000341594 TMEM105Q8N8V8 129 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 F8WEM9 126 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 FOLR3P41439 243 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 Q8TCH9 128 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 MYCNOSP40205 109 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 ZNF295-AS1Q8N0V1 137 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 IL17DQ8TAD2 202 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 IGHV4-59P01825 116 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 TRBV25-1A0A075B6N4 114 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 LINC00322Q6ZN03 302 aaPredicted RBP2.75□□□□□ -1.97
SYNE1-201ENST00000341594 TNRC18O15417 2968 aaPredicted RBP2.75□□□□□ -1.97
SYNE1-201ENST00000341594 CRYGAP11844 174 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 INSP01308 110 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 STAB1Q9NY15 2570 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 TMEM178BH3BS89 294 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 UBE2D3P61077 147 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 UBE2D2P62837 147 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 RUSC1-AS1Q66K80 236 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 NDUFB1O75438 58 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 CD177Q8N6Q3 437 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 UBE2D1P51668 147 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms