RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 TGIF2-C20orf24A0A0A6YYL0 155 aa15.37■□□□□ 0.05
SDC3-202ENST00000339394 NEXN-AS1Q8NBZ9 246 aa15.37■□□□□ 0.05
SDC3-202ENST00000339394 ZNRF2Q8NHG8 242 aa15.37■□□□□ 0.05
SDC3-202ENST00000339394 FRZBQ92765 325 aa15.37■□□□□ 0.05
SDC3-202ENST00000339394 TRBV7-3A0A075B6L6 115 aa15.36■□□□□ 0.05
SDC3-202ENST00000339394 GAS8-AS1O95177 125 aa15.36■□□□□ 0.05
SDC3-202ENST00000339394 MRPL51Q4U2R6 128 aaKnown RBP15.36■□□□□ 0.05
SDC3-202ENST00000339394 TRBV24-1A0A075B6N3 115 aa15.36■□□□□ 0.05
SDC3-202ENST00000339394 LINC00694P0DN24 101 aa15.36■□□□□ 0.05
SDC3-202ENST00000339394 RPL36AP83881 106 aaKnown RBP15.36■□□□□ 0.05
SDC3-202ENST00000339394 NEGR1Q7Z3B1 354 aa15.36■□□□□ 0.05
SDC3-202ENST00000339394 RPL36ALQ969Q0 106 aaKnown RBP15.36■□□□□ 0.05
SDC3-202ENST00000339394 MRAP2Q96G30 205 aa15.36■□□□□ 0.05
SDC3-202ENST00000339394 YPEL4Q96NS1 127 aa15.36■□□□□ 0.05
SDC3-202ENST00000339394 NIT2Q9NQR4 276 aa15.36■□□□□ 0.05
SDC3-202ENST00000339394 S100A1P23297 94 aa15.35■□□□□ 0.05
SDC3-202ENST00000339394 TMEM136Q6ZRR5 245 aa15.35■□□□□ 0.05
SDC3-202ENST00000339394 SH2D6Q7Z4S9 175 aa15.34■□□□□ 0.05
SDC3-202ENST00000339394 RPL39LQ96EH5 51 aaKnown RBP15.34■□□□□ 0.05
SDC3-202ENST00000339394 SMKR1H3BMG3 65 aa15.33■□□□□ 0.05
SDC3-202ENST00000339394 DNAJC30Q96LL9 226 aa15.33■□□□□ 0.05
SDC3-202ENST00000339394 GNB1LQ9BYB4 327 aa15.33■□□□□ 0.05
SDC3-202ENST00000339394 TNFRSF18Q9Y5U5 241 aa15.33■□□□□ 0.05
SDC3-202ENST00000339394 NCR2O95944 276 aa15.32■□□□□ 0.04
SDC3-202ENST00000339394 UBE2D3P61077 147 aa15.32■□□□□ 0.04
SDC3-202ENST00000339394 UBE2D2P62837 147 aa15.32■□□□□ 0.04
SDC3-202ENST00000339394 ESRGQ1W209 222 aa15.32■□□□□ 0.04
SDC3-202ENST00000339394 ATP6V0E2Q8NHE4 81 aa15.32■□□□□ 0.04
SDC3-202ENST00000339394 SCO1O75880 301 aa15.32■□□□□ 0.04
SDC3-202ENST00000339394 CKS2P33552 79 aa15.32■□□□□ 0.04
SDC3-202ENST00000339394 RPS10P46783 165 aaKnown RBP15.32■□□□□ 0.04
SDC3-202ENST00000339394 LYPD5Q6UWN5 251 aa15.32■□□□□ 0.04
SDC3-202ENST00000339394 COX19Q49B96 90 aa15.31■□□□□ 0.04
SDC3-202ENST00000339394 D6R8Y8 96 aa15.3■□□□□ 0.04
SDC3-202ENST00000339394 HLA-DQA1P01909 254 aa15.3■□□□□ 0.04
SDC3-202ENST00000339394 CCL18P55774 89 aa15.3■□□□□ 0.04
SDC3-202ENST00000339394 OR10J3Q5JRS4 329 aa15.29■□□□□ 0.04
SDC3-202ENST00000339394 NRACQ8N912 160 aa15.29■□□□□ 0.04
SDC3-202ENST00000339394 GTSF1LQ9H1H1 148 aa15.29■□□□□ 0.04
SDC3-202ENST00000339394 PPBPP02775 128 aa15.28■□□□□ 0.04
SDC3-202ENST00000339394 LINC00588Q9Y4M8 146 aa15.28■□□□□ 0.04
SDC3-202ENST00000339394 VPS13DQ5THJ4 4388 aa15.28■□□□□ 0.04
SDC3-202ENST00000339394 IGHV3-38A0A0C4DH36 116 aa15.28■□□□□ 0.04
SDC3-202ENST00000339394 TRBV6-5A0A0K0K1A5 114 aa15.28■□□□□ 0.04
SDC3-202ENST00000339394 PPP1R17O96001 155 aa15.28■□□□□ 0.04
SDC3-202ENST00000339394 APCSP02743 223 aa15.28■□□□□ 0.04
SDC3-202ENST00000339394 DAZ4Q86SG3 579 aaKnown RBP15.28■□□□□ 0.04
SDC3-202ENST00000339394 ORMDL3Q8N138 153 aa15.28■□□□□ 0.04
SDC3-202ENST00000339394 DAZ3Q9NR90 486 aaKnown RBP15.28■□□□□ 0.04
SDC3-202ENST00000339394 DNAH1Q9P2D7 4330 aa15.28■□□□□ 0.04
SDC3-202ENST00000339394 MT-ND6P03923 174 aa15.27■□□□□ 0.03
SDC3-202ENST00000339394 LGALS9CQ6DKI2 356 aa15.27■□□□□ 0.03
SDC3-202ENST00000339394 SDHAF1A6NFY7 115 aa15.26■□□□□ 0.03
SDC3-202ENST00000339394 ST20Q9HBF5 79 aa15.26■□□□□ 0.03
SDC3-202ENST00000339394 TIRAPP58753 221 aa15.25■□□□□ 0.03
SDC3-202ENST00000339394 KIAA1644Q3SXP7 199 aa15.25■□□□□ 0.03
SDC3-202ENST00000339394 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.25■□□□□ 0.03
SDC3-202ENST00000339394 MRPL18Q9H0U6 180 aaKnown RBP15.25■□□□□ 0.03
SDC3-202ENST00000339394 TNFRSF6BO95407 300 aa15.24■□□□□ 0.03
SDC3-202ENST00000339394 UBE2DNLQ8IWF7 75 aa15.24■□□□□ 0.03
SDC3-202ENST00000339394 LINC00476Q8WZB0 136 aa15.24■□□□□ 0.03
SDC3-202ENST00000339394 PRELID3AQ96N28 172 aa15.24■□□□□ 0.03
SDC3-202ENST00000339394 NPYP01303 97 aa15.24■□□□□ 0.03
SDC3-202ENST00000339394 SUMO2P61956 95 aaKnown RBP15.24■□□□□ 0.03
SDC3-202ENST00000339394 FABP9Q0Z7S8 132 aa15.24■□□□□ 0.03
SDC3-202ENST00000339394 TMEM70Q9BUB7 260 aa15.24■□□□□ 0.03
SDC3-202ENST00000339394 TRAPPC1Q9Y5R8 145 aa15.24■□□□□ 0.03
SDC3-202ENST00000339394 SACSQ9NZJ4 4579 aa15.23■□□□□ 0.03
SDC3-202ENST00000339394 COLCA2A8K830 154 aa15.23■□□□□ 0.03
SDC3-202ENST00000339394 LY6G6CO95867 125 aa15.23■□□□□ 0.03
SDC3-202ENST00000339394 POLR2KP53803 58 aaKnown RBP15.23■□□□□ 0.03
SDC3-202ENST00000339394 MRPS16Q9Y3D3 137 aaKnown RBP15.23■□□□□ 0.03
SDC3-202ENST00000339394 KMT2CQ8NEZ4 4911 aaKnown RBP15.22■□□□□ 0.03
SDC3-202ENST00000339394 DEFB104AQ8WTQ1 72 aa15.22■□□□□ 0.03
SDC3-202ENST00000339394 C20orf78Q9BR46 151 aa15.22■□□□□ 0.03
SDC3-202ENST00000339394 ALMS1Q8TCU4 4167 aa15.22■□□□□ 0.03
SDC3-202ENST00000339394 PHOX2AO14813 284 aa15.21■□□□□ 0.03
SDC3-202ENST00000339394 LELP1Q5T871 98 aa15.21■□□□□ 0.03
SDC3-202ENST00000339394 NTM-AS1Q6ZSK4 140 aa15.2■□□□□ 0.02
SDC3-202ENST00000339394 UPK3BQ9BT76 320 aa15.2■□□□□ 0.02
SDC3-202ENST00000339394 LAMTOR2Q9Y2Q5 125 aa15.2■□□□□ 0.02
SDC3-202ENST00000339394 TRBV6-8A0A0A6YYG3 113 aa15.19■□□□□ 0.02
SDC3-202ENST00000339394 TRBV27A0A0K0K1C4 114 aa15.19■□□□□ 0.02
SDC3-202ENST00000339394 I3L3M4 83 aa15.19■□□□□ 0.02
SDC3-202ENST00000339394 KMT2AQ03164 3969 aa15.19■□□□□ 0.02
SDC3-202ENST00000339394 VCYO14598 125 aa15.19■□□□□ 0.02
SDC3-202ENST00000339394 PMCHP20382 165 aa15.18■□□□□ 0.02
SDC3-202ENST00000339394 COTL1Q14019 142 aa15.18■□□□□ 0.02
SDC3-202ENST00000339394 TMEM97Q5BJF2 176 aa15.18■□□□□ 0.02
SDC3-202ENST00000339394 ALKBH7Q9BT30 221 aaPredicted RBP15.17■□□□□ 0.02
SDC3-202ENST00000339394 TRAV8-6A0A0B4J262 113 aa15.16■□□□□ 0.02
SDC3-202ENST00000339394 RAB5AP20339 215 aa15.16■□□□□ 0.02
SDC3-202ENST00000339394 RPL32P62910 135 aaKnown RBP15.16■□□□□ 0.02
SDC3-202ENST00000339394 WFDC10BQ8IUB3 73 aa15.16■□□□□ 0.02
SDC3-202ENST00000339394 Q9H8V8 135 aa15.16■□□□□ 0.02
SDC3-202ENST00000339394 LCE6AA0A183 80 aa15.15■□□□□ 0.02
SDC3-202ENST00000339394 PRSS47A8MTI9 375 aa15.15■□□□□ 0.02
SDC3-202ENST00000339394 SMIM2Q9BVW6 85 aa15.15■□□□□ 0.02
SDC3-202ENST00000339394 TRBV25-1A0A075B6N4 114 aa15.15■□□□□ 0.02
SDC3-202ENST00000339394 LOC389332A0A1B0GUA5 103 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms