RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 GLMPQ8WWB7 406 aa11.86□□□□□ -0.51
USH1C-202ENST00000318024 INAFM1C9JVW0 142 aa11.86□□□□□ -0.51
USH1C-202ENST00000318024 TSHBP01222 138 aa11.86□□□□□ -0.51
USH1C-202ENST00000318024 ELANEP08246 267 aa11.86□□□□□ -0.51
USH1C-202ENST00000318024 ZFP2Q6ZN57 461 aa11.86□□□□□ -0.51
USH1C-202ENST00000318024 SBSPONQ8IVN8 264 aa11.86□□□□□ -0.51
USH1C-202ENST00000318024 C11orf44Q8N8P7 122 aa11.86□□□□□ -0.51
USH1C-202ENST00000318024 SYT8Q8NBV8 401 aa11.86□□□□□ -0.51
USH1C-202ENST00000318024 MRPL16Q9NX20 251 aaKnown RBP11.86□□□□□ -0.51
USH1C-202ENST00000318024 IGLV4-69A0A075B6H9 119 aa11.85□□□□□ -0.51
USH1C-202ENST00000318024 CARD19Q96LW7 228 aa11.85□□□□□ -0.51
USH1C-202ENST00000318024 TMEM89A2RUT3 159 aa11.84□□□□□ -0.51
USH1C-202ENST00000318024 MED14OSP0DP75 135 aa11.84□□□□□ -0.51
USH1C-202ENST00000318024 DEFB136Q30KP8 78 aa11.84□□□□□ -0.51
USH1C-202ENST00000318024 KHDC1LQ5JSQ8 128 aa11.84□□□□□ -0.51
USH1C-202ENST00000318024 FAM19A4Q96LR4 140 aa11.84□□□□□ -0.51
USH1C-202ENST00000318024 TRAV26-1A0A087WT03 109 aa11.84□□□□□ -0.51
USH1C-202ENST00000318024 A0A0J9YY99 117 aa11.84□□□□□ -0.51
USH1C-202ENST00000318024 C14orf178Q8N769 122 aaPredicted RBP11.84□□□□□ -0.51
USH1C-202ENST00000318024 SOCS3O14543 225 aa11.83□□□□□ -0.52
USH1C-202ENST00000318024 APRG1Q8IVJ8 170 aa11.83□□□□□ -0.52
USH1C-202ENST00000318024 KLHL30-AS1Q8NEE0 82 aa11.83□□□□□ -0.52
USH1C-202ENST00000318024 ZNF418Q8TF45 676 aaPredicted RBP11.83□□□□□ -0.52
USH1C-202ENST00000318024 LINC00477Q96M19 166 aa11.83□□□□□ -0.52
USH1C-202ENST00000318024 IGKV3-7A0A075B6H7 116 aa11.83□□□□□ -0.52
USH1C-202ENST00000318024 IGHV4OR15-8A0A075B7B6 117 aa11.83□□□□□ -0.52
USH1C-202ENST00000318024 A0A087WW49 117 aa11.83□□□□□ -0.52
USH1C-202ENST00000318024 C11orf86A6NJI1 115 aa11.83□□□□□ -0.52
USH1C-202ENST00000318024 LINC00315P59091 139 aa11.83□□□□□ -0.52
USH1C-202ENST00000318024 NDUFA11Q86Y39 141 aa11.83□□□□□ -0.52
USH1C-202ENST00000318024 UBE2E2Q96LR5 201 aa11.83□□□□□ -0.52
USH1C-202ENST00000318024 KIF25-AS1Q9Y6Z4 181 aa11.83□□□□□ -0.52
USH1C-202ENST00000318024 MUC4Q99102 2169 aa11.82□□□□□ -0.52
USH1C-202ENST00000318024 TRAV21A0A0B4J279 112 aa11.82□□□□□ -0.52
USH1C-202ENST00000318024 IGIPA6NJ69 53 aa11.82□□□□□ -0.52
USH1C-202ENST00000318024 DUSP14O95147 198 aaKnown RBP11.82□□□□□ -0.52
USH1C-202ENST00000318024 RNASE3P12724 160 aaKnown RBP11.82□□□□□ -0.52
USH1C-202ENST00000318024 RPL32P62910 135 aaKnown RBP11.82□□□□□ -0.52
USH1C-202ENST00000318024 C16orf92Q96LL3 132 aa11.82□□□□□ -0.52
USH1C-202ENST00000318024 DUX3Q96PT4 197 aa11.82□□□□□ -0.52
USH1C-202ENST00000318024 NXPH4O95158 308 aa11.82□□□□□ -0.52
USH1C-202ENST00000318024 RNASE1P07998 156 aaKnown RBP11.82□□□□□ -0.52
USH1C-202ENST00000318024 RPL11P62913 178 aaKnown RBP11.82□□□□□ -0.52
USH1C-202ENST00000318024 SHISA2Q6UWI4 295 aa11.82□□□□□ -0.52
USH1C-202ENST00000318024 MT-ATP8P03928 68 aa11.81□□□□□ -0.52
USH1C-202ENST00000318024 SYNJ2BPP57105 145 aa11.81□□□□□ -0.52
USH1C-202ENST00000318024 HILS1P60008 231 aa11.81□□□□□ -0.52
USH1C-202ENST00000318024 ANXA2RQ3ZCQ2 193 aa11.81□□□□□ -0.52
USH1C-202ENST00000318024 RNF152Q8N8N0 203 aa11.81□□□□□ -0.52
USH1C-202ENST00000318024 PTH2Q96A98 100 aa11.81□□□□□ -0.52
USH1C-202ENST00000318024 RHPN1-AS1Q9BWJ2 59 aa11.81□□□□□ -0.52
USH1C-202ENST00000318024 DAZ1Q9NQZ3 744 aaKnown RBP11.81□□□□□ -0.52
USH1C-202ENST00000318024 PSMB2P49721 201 aa11.8□□□□□ -0.52
USH1C-202ENST00000318024 XGP55808 180 aa11.8□□□□□ -0.52
USH1C-202ENST00000318024 SCGB1D4Q6XE38 83 aa11.8□□□□□ -0.52
USH1C-202ENST00000318024 Q6ZUT4 128 aa11.8□□□□□ -0.52
USH1C-202ENST00000318024 TEN1Q86WV5 123 aa11.8□□□□□ -0.52
USH1C-202ENST00000318024 AMELXQ99217 191 aa11.8□□□□□ -0.52
USH1C-202ENST00000318024 SETXQ7Z333 2677 aaKnown RBP11.8□□□□□ -0.52
USH1C-202ENST00000318024 TCL1BO95988 128 aa11.8□□□□□ -0.52
USH1C-202ENST00000318024 IGHV3-30P01768 117 aa11.8□□□□□ -0.52
USH1C-202ENST00000318024 IGHV3-30-5P0DP03 117 aa11.8□□□□□ -0.52
USH1C-202ENST00000318024 ASIPP42127 132 aa11.8□□□□□ -0.52
USH1C-202ENST00000318024 SRSF9Q13242 221 aaKnown RBP eCLIP11.8□□□□□ -0.52
USH1C-202ENST00000318024 PPDPFLQ8WWR9 84 aa11.8□□□□□ -0.52
USH1C-202ENST00000318024 CFC1BP0CG36 223 aa11.79□□□□□ -0.52
USH1C-202ENST00000318024 CFC1P0CG37 223 aa11.79□□□□□ -0.52
USH1C-202ENST00000318024 HOXD3P31249 432 aaPredicted RBP11.79□□□□□ -0.52
USH1C-202ENST00000318024 POLR2KP53803 58 aaKnown RBP11.79□□□□□ -0.52
USH1C-202ENST00000318024 TSPEAR-AS2P59090 65 aa11.79□□□□□ -0.52
USH1C-202ENST00000318024 LINC01006Q8NI28 216 aa11.79□□□□□ -0.52
USH1C-202ENST00000318024 PHLDA3Q9Y5J5 127 aa11.79□□□□□ -0.52
USH1C-202ENST00000318024 NSD1Q96L73 2696 aaPredicted RBP11.79□□□□□ -0.52
USH1C-202ENST00000318024 LOC107984156A0A0G2JMH3 177 aa11.79□□□□□ -0.52
USH1C-202ENST00000318024 PPP1R17O96001 155 aa11.79□□□□□ -0.52
USH1C-202ENST00000318024 SPINK8P0C7L1 97 aa11.79□□□□□ -0.52
USH1C-202ENST00000318024 ARL17AQ8IVW1 177 aa11.79□□□□□ -0.52
USH1C-202ENST00000318024 FN1P02751 2386 aaKnown RBP11.79□□□□□ -0.52
USH1C-202ENST00000318024 A0A1W2PRX2 142 aa11.78□□□□□ -0.52
USH1C-202ENST00000318024 DEFB1P60022 68 aa11.78□□□□□ -0.52
USH1C-202ENST00000318024 PAPPA-AS1Q5QFB9 102 aa11.78□□□□□ -0.52
USH1C-202ENST00000318024 SLC25A29Q8N8R3 303 aa11.78□□□□□ -0.52
USH1C-202ENST00000318024 GEMIN7Q9H840 131 aaKnown RBP11.78□□□□□ -0.52
USH1C-202ENST00000318024 OVOL1O14753 267 aa11.78□□□□□ -0.52
USH1C-202ENST00000318024 GNRH2O43555 120 aa11.78□□□□□ -0.52
USH1C-202ENST00000318024 MGPP08493 103 aa11.78□□□□□ -0.52
USH1C-202ENST00000318024 S100A4P26447 101 aaKnown RBP11.78□□□□□ -0.52
USH1C-202ENST00000318024 SLURP1P55000 103 aa11.78□□□□□ -0.52
USH1C-202ENST00000318024 SFTA2Q6UW10 78 aa11.78□□□□□ -0.52
USH1C-202ENST00000318024 TRBV20-1A0A075B6N2 111 aa11.77□□□□□ -0.53
USH1C-202ENST00000318024 CD28P10747 220 aa11.77□□□□□ -0.53
USH1C-202ENST00000318024 BAHCC1Q9P281 2608 aa11.77□□□□□ -0.53
USH1C-202ENST00000318024 PMVKQ15126 192 aa11.76□□□□□ -0.53
USH1C-202ENST00000318024 LYRM7Q5U5X0 104 aa11.76□□□□□ -0.53
USH1C-202ENST00000318024 C10orf126Q8N4M7 172 aa11.76□□□□□ -0.53
USH1C-202ENST00000318024 TRBV7-9A0A0J9YWB2 115 aa11.76□□□□□ -0.53
USH1C-202ENST00000318024 OR10J6PQ8NGY7 276 aa11.76□□□□□ -0.53
USH1C-202ENST00000318024 TP53TG1Q9Y2A0 90 aa11.76□□□□□ -0.53
USH1C-202ENST00000318024 NIPBLQ6KC79 2804 aaeCLIP11.76□□□□□ -0.53
USH1C-202ENST00000318024 EIF4EBP3O60516 100 aaPredicted RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms