RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 SCGB1C2P0DMR2 95 aa14.12□□□□□ -0.15
RTN4-201ENST00000317610 PSMB8P28062 276 aa14.12□□□□□ -0.15
RTN4-201ENST00000317610 XGP55808 180 aa14.12□□□□□ -0.15
RTN4-201ENST00000317610 I3L3M4 83 aa14.11□□□□□ -0.15
RTN4-201ENST00000317610 ANKRD29Q8N6D5 301 aa14.11□□□□□ -0.15
RTN4-201ENST00000317610 K7EQG2 157 aa14.1□□□□□ -0.15
RTN4-201ENST00000317610 RNF152Q8N8N0 203 aa14.1□□□□□ -0.15
RTN4-201ENST00000317610 IGLV4-3A0A075B6K6 122 aa14.1□□□□□ -0.15
RTN4-201ENST00000317610 SNRPD3P62318 126 aaKnown RBP14.1□□□□□ -0.15
RTN4-201ENST00000317610 M0R2P5 195 aa14.09□□□□□ -0.15
RTN4-201ENST00000317610 EDA2RQ9HAV5 297 aa14.09□□□□□ -0.15
RTN4-201ENST00000317610 SPTAN1Q13813 2472 aaKnown RBP14.08□□□□□ -0.16
RTN4-201ENST00000317610 MUSTN1Q8IVN3 82 aa14.08□□□□□ -0.16
RTN4-201ENST00000317610 ERG28Q9UKR5 140 aa14.08□□□□□ -0.16
RTN4-201ENST00000317610 A0A0J9YXV3 536 aa14.08□□□□□ -0.16
RTN4-201ENST00000317610 SLC25A20O43772 301 aa14.08□□□□□ -0.16
RTN4-201ENST00000317610 TGFAP01135 160 aa14.08□□□□□ -0.16
RTN4-201ENST00000317610 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.07□□□□□ -0.16
RTN4-201ENST00000317610 TRAV2A0A0B4J234 112 aa14.07□□□□□ -0.16
RTN4-201ENST00000317610 IGKV3-20P01619 116 aa14.07□□□□□ -0.16
RTN4-201ENST00000317610 TMEM95Q3KNT9 176 aa14.07□□□□□ -0.16
RTN4-201ENST00000317610 RAX2Q96IS3 184 aa14.07□□□□□ -0.16
RTN4-201ENST00000317610 PYGO1Q9Y3Y4 419 aa14.07□□□□□ -0.16
RTN4-201ENST00000317610 MSMBP08118 114 aa14.07□□□□□ -0.16
RTN4-201ENST00000317610 SPINK13Q1W4C9 94 aa14.07□□□□□ -0.16
RTN4-201ENST00000317610 LINC01600Q96MT4 127 aa14.06□□□□□ -0.16
RTN4-201ENST00000317610 GEMIN7Q9H840 131 aaKnown RBP14.06□□□□□ -0.16
RTN4-201ENST00000317610 A0A0J9YXY3 114 aa14.06□□□□□ -0.16
RTN4-201ENST00000317610 TMEM89A2RUT3 159 aa14.06□□□□□ -0.16
RTN4-201ENST00000317610 TRGV11A0A075B6L2 103 aa14.05□□□□□ -0.16
RTN4-201ENST00000317610 TMEM262E9PQX1 116 aa14.05□□□□□ -0.16
RTN4-201ENST00000317610 LY6DQ14210 128 aa14.05□□□□□ -0.16
RTN4-201ENST00000317610 FAM104AQ969W3 186 aa14.05□□□□□ -0.16
RTN4-201ENST00000317610 IGHV3-64A0A075B6Q5 118 aa14.04□□□□□ -0.16
RTN4-201ENST00000317610 IGHV4-30-2A0A087WSY4 118 aa14.04□□□□□ -0.16
RTN4-201ENST00000317610 C9JAW5 83 aa14.04□□□□□ -0.16
RTN4-201ENST00000317610 CCL19Q99731 98 aa14.04□□□□□ -0.16
RTN4-201ENST00000317610 MRPS36P82909 103 aaKnown RBP14.03□□□□□ -0.16
RTN4-201ENST00000317610 LITAFQ99732 161 aa14.03□□□□□ -0.16
RTN4-201ENST00000317610 CELSR1Q9NYQ6 3014 aa14.03□□□□□ -0.16
RTN4-201ENST00000317610 AVPP01185 164 aa14.03□□□□□ -0.16
RTN4-201ENST00000317610 IGHV3-30-3P0DP02 117 aa14.03□□□□□ -0.16
RTN4-201ENST00000317610 C10orf99Q6UWK7 81 aa14.02□□□□□ -0.17
RTN4-201ENST00000317610 ATXN8Q156A1 80 aa14.01□□□□□ -0.17
RTN4-201ENST00000317610 TRBV30A0A0K0K1B3 111 aa14.01□□□□□ -0.17
RTN4-201ENST00000317610 GNLYP22749 145 aa14.01□□□□□ -0.17
RTN4-201ENST00000317610 TIMM21Q9BVV7 248 aa14.01□□□□□ -0.17
RTN4-201ENST00000317610 CD28P10747 220 aa14□□□□□ -0.17
RTN4-201ENST00000317610 H7C2G1 150 aa13.99□□□□□ -0.17
RTN4-201ENST00000317610 ELANEP08246 267 aa13.99□□□□□ -0.17
RTN4-201ENST00000317610 LINC01620Q4KN68 170 aa13.99□□□□□ -0.17
RTN4-201ENST00000317610 TRAV26-1A0A087WT03 109 aa13.99□□□□□ -0.17
RTN4-201ENST00000317610 RBMY1A1P0DJD3 496 aaKnown RBP13.99□□□□□ -0.17
RTN4-201ENST00000317610 RBMY1CP0DJD4 496 aa13.99□□□□□ -0.17
RTN4-201ENST00000317610 ATP5J2P56134 94 aa13.99□□□□□ -0.17
RTN4-201ENST00000317610 RBMY1FQ15415 496 aaKnown RBP13.99□□□□□ -0.17
RTN4-201ENST00000317610 SPXQ9BT56 116 aa13.99□□□□□ -0.17
RTN4-201ENST00000317610 SPANXDQ9BXN6 97 aa13.99□□□□□ -0.17
RTN4-201ENST00000317610 SPANXCQ9NY87 97 aa13.99□□□□□ -0.17
RTN4-201ENST00000317610 IGHV1-58A0A0C4DH39 117 aa13.98□□□□□ -0.17
RTN4-201ENST00000317610 IGHV4-59P01825 116 aa13.98□□□□□ -0.17
RTN4-201ENST00000317610 SYNJ2BPP57105 145 aa13.98□□□□□ -0.17
RTN4-201ENST00000317610 CITED1Q99966 193 aa13.98□□□□□ -0.17
RTN4-201ENST00000317610 B4DSR2 109 aa13.97□□□□□ -0.17
RTN4-201ENST00000317610 Q1RN00 199 aa13.97□□□□□ -0.17
RTN4-201ENST00000317610 VPS13CQ709C8 3753 aa13.97□□□□□ -0.17
RTN4-201ENST00000317610 DOPEY2Q9Y3R5 2298 aa13.97□□□□□ -0.17
RTN4-201ENST00000317610 TRIAP1O43715 76 aa13.96□□□□□ -0.17
RTN4-201ENST00000317610 RPL13AP40429 203 aaKnown RBP13.96□□□□□ -0.17
RTN4-201ENST00000317610 TRBV10-2A0A0K0K1G8 114 aa13.96□□□□□ -0.18
RTN4-201ENST00000317610 TINCRA0A1B0GVN0 87 aa13.96□□□□□ -0.18
RTN4-201ENST00000317610 A8MTW9 85 aa13.96□□□□□ -0.18
RTN4-201ENST00000317610 GATA3P23771 443 aa13.96□□□□□ -0.18
RTN4-201ENST00000317610 DEFB112Q30KQ8 113 aa13.96□□□□□ -0.18
RTN4-201ENST00000317610 TRAV8-3A0A0A6YYJ7 113 aa13.95□□□□□ -0.18
RTN4-201ENST00000317610 ADARB2-AS1A8MUL3 147 aa13.95□□□□□ -0.18
RTN4-201ENST00000317610 PIK3CD-AS1Q5SR53 167 aa13.95□□□□□ -0.18
RTN4-201ENST00000317610 NTN5Q8WTR8 489 aaPredicted RBP13.95□□□□□ -0.18
RTN4-201ENST00000317610 PROK1P58294 105 aa13.95□□□□□ -0.18
RTN4-201ENST00000317610 VSIG2Q96IQ7 327 aa13.95□□□□□ -0.18
RTN4-201ENST00000317610 SPANXA1Q9NS26 97 aa13.95□□□□□ -0.18
RTN4-201ENST00000317610 PRRC2AP48634 2157 aaKnown RBP13.94□□□□□ -0.18
RTN4-201ENST00000317610 ADAMTSL4-AS1Q5T5F5 129 aa13.94□□□□□ -0.18
RTN4-201ENST00000317610 ZFAND6Q6FIF0 208 aa13.94□□□□□ -0.18
RTN4-201ENST00000317610 CEMP1Q6PRD7 247 aaPredicted RBP13.94□□□□□ -0.18
RTN4-201ENST00000317610 RNF183Q96D59 192 aa13.94□□□□□ -0.18
RTN4-201ENST00000317610 CHCHD7Q9BUK0 85 aa13.94□□□□□ -0.18
RTN4-201ENST00000317610 NDUFA12Q9UI09 145 aa13.94□□□□□ -0.18
RTN4-201ENST00000317610 TNFRSF18Q9Y5U5 241 aa13.94□□□□□ -0.18
RTN4-201ENST00000317610 IGHV3-73A0A0B4J1V6 119 aa13.93□□□□□ -0.18
RTN4-201ENST00000317610 MIAQ16674 131 aa13.93□□□□□ -0.18
RTN4-201ENST00000317610 Q5PR19 223 aa13.93□□□□□ -0.18
RTN4-201ENST00000317610 PRORYQ9H606 182 aa13.93□□□□□ -0.18
RTN4-201ENST00000317610 CLUHP3Q96NS8 147 aa13.93□□□□□ -0.18
RTN4-201ENST00000317610 UBE2D4Q9Y2X8 147 aa13.93□□□□□ -0.18
RTN4-201ENST00000317610 HOXD3P31249 432 aaPredicted RBP13.92□□□□□ -0.18
RTN4-201ENST00000317610 NACAE9PAV3 2078 aa13.92□□□□□ -0.18
RTN4-201ENST00000317610 ICOSQ9Y6W8 199 aa13.92□□□□□ -0.18
RTN4-201ENST00000317610 TEX29Q8N6K0 151 aa13.91□□□□□ -0.18
RTN4-201ENST00000317610 KNCNA6PVL3 124 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms