RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 IGLV2-23P01705 113 aa10.73□□□□□ -0.69
CSPG4-201ENST00000308508 IGFL3Q6UXB1 125 aa10.73□□□□□ -0.69
CSPG4-201ENST00000308508 IGLV11-55A0A075B6I3 123 aa10.72□□□□□ -0.69
CSPG4-201ENST00000308508 C9orf66Q5T8R8 295 aa10.72□□□□□ -0.69
CSPG4-201ENST00000308508 IGHV4OR15-8A0A075B7B6 117 aa10.72□□□□□ -0.69
CSPG4-201ENST00000308508 A0A087WW49 117 aa10.72□□□□□ -0.69
CSPG4-201ENST00000308508 TRBV6-1A0A0K0K1D8 114 aa10.71□□□□□ -0.69
CSPG4-201ENST00000308508 FAM167A-AS1Q96KT0 104 aa10.71□□□□□ -0.69
CSPG4-201ENST00000308508 TM2D2Q9BX73 214 aa10.71□□□□□ -0.69
CSPG4-201ENST00000308508 MDFICQ9P1T7 246 aa10.71□□□□□ -0.69
CSPG4-201ENST00000308508 PROK2Q9HC23 129 aa10.71□□□□□ -0.7
CSPG4-201ENST00000308508 B9D2Q9BPU9 175 aa10.71□□□□□ -0.7
CSPG4-201ENST00000308508 KIAA1671Q9BY89 1806 aa10.7□□□□□ -0.7
CSPG4-201ENST00000308508 NFE4Q86UQ8 179 aa10.7□□□□□ -0.7
CSPG4-201ENST00000308508 IGKV1-17P01599 117 aa10.7□□□□□ -0.7
CSPG4-201ENST00000308508 PRR30Q53SZ7 412 aaPredicted RBP10.7□□□□□ -0.7
CSPG4-201ENST00000308508 DEFB136Q30KP8 78 aa10.7□□□□□ -0.7
CSPG4-201ENST00000308508 ADAMTS9Q9P2N4 1935 aa10.69□□□□□ -0.7
CSPG4-201ENST00000308508 CTSGP08311 255 aa10.69□□□□□ -0.7
CSPG4-201ENST00000308508 CENPVL3A0A0U1RRI6 287 aa10.69□□□□□ -0.7
CSPG4-201ENST00000308508 K7ENP7 123 aa10.69□□□□□ -0.7
CSPG4-201ENST00000308508 SLURP1P55000 103 aa10.69□□□□□ -0.7
CSPG4-201ENST00000308508 IGHV7-81A0A0B4J1V7 117 aa10.69□□□□□ -0.7
CSPG4-201ENST00000308508 SORL1Q92673 2214 aa10.68□□□□□ -0.7
CSPG4-201ENST00000308508 C10orf105Q8TEF2 133 aa10.68□□□□□ -0.7
CSPG4-201ENST00000308508 PRR14LQ5THK1 2151 aa10.68□□□□□ -0.7
CSPG4-201ENST00000308508 PATE2Q6UY27 113 aa10.68□□□□□ -0.7
CSPG4-201ENST00000308508 ZNF106Q9H2Y7 1883 aaKnown RBP10.68□□□□□ -0.7
CSPG4-201ENST00000308508 FANCD2OSQ96PS1 177 aa10.68□□□□□ -0.7
CSPG4-201ENST00000308508 NDUFA7O95182 113 aa10.68□□□□□ -0.7
CSPG4-201ENST00000308508 ALPK3Q96L96 1907 aa10.67□□□□□ -0.7
CSPG4-201ENST00000308508 IGHV4-59P01825 116 aa10.67□□□□□ -0.7
CSPG4-201ENST00000308508 AJUBAQ96IF1 538 aa10.67□□□□□ -0.7
CSPG4-201ENST00000308508 KIAA1549LQ6ZVL6 1849 aa10.67□□□□□ -0.7
CSPG4-201ENST00000308508 ENHOQ6UWT2 76 aa10.67□□□□□ -0.7
CSPG4-201ENST00000308508 DEFB112Q30KQ8 113 aa10.66□□□□□ -0.7
CSPG4-201ENST00000308508 IMUPQ9GZP8 106 aa10.66□□□□□ -0.7
CSPG4-201ENST00000308508 C20orf203Q8NBC4 194 aa10.66□□□□□ -0.7
CSPG4-201ENST00000308508 A0A0J9YXY3 114 aa10.66□□□□□ -0.7
CSPG4-201ENST00000308508 C2orf70A6NJV1 201 aa10.66□□□□□ -0.7
CSPG4-201ENST00000308508 C11orf53Q8IXP5 236 aa10.66□□□□□ -0.7
CSPG4-201ENST00000308508 PIK3CD-AS1Q5SR53 167 aa10.65□□□□□ -0.7
CSPG4-201ENST00000308508 MLST8Q9BVC4 326 aa10.65□□□□□ -0.7
CSPG4-201ENST00000308508 LYPD6Q86Y78 171 aa10.65□□□□□ -0.71
CSPG4-201ENST00000308508 PLA2G2EQ9NZK7 142 aa10.65□□□□□ -0.71
CSPG4-201ENST00000308508 A6NED7 52 aa10.65□□□□□ -0.71
CSPG4-201ENST00000308508 K7EMT4 169 aa10.65□□□□□ -0.71
CSPG4-201ENST00000308508 CTSZQ9UBR2 303 aa10.65□□□□□ -0.71
CSPG4-201ENST00000308508 TRBV10-1A0A0K0K1A3 114 aa10.64□□□□□ -0.71
CSPG4-201ENST00000308508 C19orf71A6NCJ1 209 aa10.64□□□□□ -0.71
CSPG4-201ENST00000308508 F8W735 103 aaPredicted RBP10.64□□□□□ -0.71
CSPG4-201ENST00000308508 TANC1Q9C0D5 1861 aa10.64□□□□□ -0.71
CSPG4-201ENST00000308508 P0DMU3 169 aa10.64□□□□□ -0.71
CSPG4-201ENST00000308508 FAM231AP0DMU4 169 aa10.64□□□□□ -0.71
CSPG4-201ENST00000308508 FAM231CP0DMU5 169 aa10.64□□□□□ -0.71
CSPG4-201ENST00000308508 TMEM263Q8WUH6 116 aaKnown RBP10.64□□□□□ -0.71
CSPG4-201ENST00000308508 UFSP1Q6NVU6 142 aa10.64□□□□□ -0.71
CSPG4-201ENST00000308508 PRSS33Q8NF86 280 aa10.64□□□□□ -0.71
CSPG4-201ENST00000308508 SERP2Q8N6R1 65 aa10.63□□□□□ -0.71
CSPG4-201ENST00000308508 RITA1Q96K30 269 aa10.63□□□□□ -0.71
CSPG4-201ENST00000308508 KLK12Q9UKR0 248 aa10.63□□□□□ -0.71
CSPG4-201ENST00000308508 PRAC2D3DTV9 90 aa10.63□□□□□ -0.71
CSPG4-201ENST00000308508 C5orf56Q8N8D9 126 aa10.63□□□□□ -0.71
CSPG4-201ENST00000308508 C20orf173Q96LM9 149 aa10.62□□□□□ -0.71
CSPG4-201ENST00000308508 KIR2DL5BQ8NHK3 375 aa10.62□□□□□ -0.71
CSPG4-201ENST00000308508 ZNF524Q96C55 264 aa10.61□□□□□ -0.71
CSPG4-201ENST00000308508 A0A1B0GXF2 115 aa10.61□□□□□ -0.71
CSPG4-201ENST00000308508 C1orf195Q5TG92 126 aa10.61□□□□□ -0.71
CSPG4-201ENST00000308508 LYRM9A8MSI8 78 aa10.61□□□□□ -0.71
CSPG4-201ENST00000308508 BLCAPP62952 87 aa10.61□□□□□ -0.71
CSPG4-201ENST00000308508 GPHB5Q86YW7 130 aa10.61□□□□□ -0.71
CSPG4-201ENST00000308508 FAM215AQ9Y5M1 114 aa10.61□□□□□ -0.71
CSPG4-201ENST00000308508 NOTCH4Q99466 2003 aa10.6□□□□□ -0.71
CSPG4-201ENST00000308508 C14orf177Q52M58 125 aa10.6□□□□□ -0.71
CSPG4-201ENST00000308508 TRBV30A0A0K0K1B3 111 aa10.6□□□□□ -0.71
CSPG4-201ENST00000308508 KRTAP27-1Q3LI81 207 aa10.6□□□□□ -0.71
CSPG4-201ENST00000308508 ZFAND2AQ8N6M9 145 aa10.59□□□□□ -0.71
CSPG4-201ENST00000308508 SPRY4Q9C004 299 aa10.59□□□□□ -0.71
CSPG4-201ENST00000308508 H7C423 109 aa10.59□□□□□ -0.71
CSPG4-201ENST00000308508 TIMM17BO60830 172 aa10.59□□□□□ -0.71
CSPG4-201ENST00000308508 WFDC10BQ8IUB3 73 aa10.59□□□□□ -0.71
CSPG4-201ENST00000308508 FAM19A3Q7Z5A8 133 aa10.59□□□□□ -0.71
CSPG4-201ENST00000308508 Q8N9W7 124 aa10.59□□□□□ -0.71
CSPG4-201ENST00000308508 WFDC11Q8NEX6 87 aa10.58□□□□□ -0.72
CSPG4-201ENST00000308508 ESM1Q9NQ30 184 aa10.58□□□□□ -0.72
CSPG4-201ENST00000308508 C2orf16Q68DN1 1984 aa10.58□□□□□ -0.72
CSPG4-201ENST00000308508 AGRNO00468 2067 aa10.58□□□□□ -0.72
CSPG4-201ENST00000308508 NEXN-AS1Q8NBZ9 246 aa10.58□□□□□ -0.72
CSPG4-201ENST00000308508 PRO0255Q9UI72 69 aa10.58□□□□□ -0.72
CSPG4-201ENST00000308508 TRIAP1O43715 76 aa10.57□□□□□ -0.72
CSPG4-201ENST00000308508 PRRC2AP48634 2157 aaKnown RBP10.57□□□□□ -0.72
CSPG4-201ENST00000308508 C4orf3Q8WVX3 66 aa10.57□□□□□ -0.72
CSPG4-201ENST00000308508 TMEM89A2RUT3 159 aa10.57□□□□□ -0.72
CSPG4-201ENST00000308508 FRMD6-AS1P0C7T7 363 aa10.57□□□□□ -0.72
CSPG4-201ENST00000308508 SCXQ7RTU7 201 aa10.57□□□□□ -0.72
CSPG4-201ENST00000308508 PCNX3Q9H6A9 2034 aa10.56□□□□□ -0.72
CSPG4-201ENST00000308508 LRRC75A-AS1Q8N1F1 130 aa10.56□□□□□ -0.72
CSPG4-201ENST00000308508 IGHV4-38-2P0DP08 117 aa10.56□□□□□ -0.72
CSPG4-201ENST00000308508 COX7CP15954 63 aa10.56□□□□□ -0.72
CSPG4-201ENST00000308508 Q6ZSR3 168 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms