RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 MAPKAPK5-AS1Q8N8E1 139 aa9.78□□□□□ -0.84
COL3A1-201ENST00000304636 SIRPDQ9H106 197 aa9.78□□□□□ -0.84
COL3A1-201ENST00000304636 A0A1W2PNU3 283 aaPredicted RBP9.78□□□□□ -0.84
COL3A1-201ENST00000304636 CCL24O00175 119 aa9.78□□□□□ -0.84
COL3A1-201ENST00000304636 COX7A2LO14548 114 aa9.78□□□□□ -0.84
COL3A1-201ENST00000304636 UNQ9165/PRO28630Q6UXU0 137 aa9.78□□□□□ -0.84
COL3A1-201ENST00000304636 NOTCH3Q9UM47 2321 aa9.77□□□□□ -0.84
COL3A1-201ENST00000304636 TMEM89A2RUT3 159 aa9.77□□□□□ -0.84
COL3A1-201ENST00000304636 A0A0J9YX75 114 aa9.77□□□□□ -0.85
COL3A1-201ENST00000304636 CCDC140Q96MF4 163 aa9.77□□□□□ -0.85
COL3A1-201ENST00000304636 ADAMTS9Q9P2N4 1935 aa9.77□□□□□ -0.85
COL3A1-201ENST00000304636 C3orf56Q8N813 242 aa9.77□□□□□ -0.85
COL3A1-201ENST00000304636 NDUFC2O95298 119 aa9.76□□□□□ -0.85
COL3A1-201ENST00000304636 RNF185Q96GF1 192 aa9.76□□□□□ -0.85
COL3A1-201ENST00000304636 CACNA1BQ00975 2339 aa9.76□□□□□ -0.85
COL3A1-201ENST00000304636 IGHV4OR15-8A0A075B7B6 117 aa9.76□□□□□ -0.85
COL3A1-201ENST00000304636 A0A087WW49 117 aa9.76□□□□□ -0.85
COL3A1-201ENST00000304636 PCNX1Q96RV3 2341 aa9.76□□□□□ -0.85
COL3A1-201ENST00000304636 A0A0J9YY99 117 aa9.76□□□□□ -0.85
COL3A1-201ENST00000304636 TEX49A0A1B0GTD5 131 aa9.76□□□□□ -0.85
COL3A1-201ENST00000304636 FUSP35637 526 aaKnown RBP eCLIP9.76□□□□□ -0.85
COL3A1-201ENST00000304636 MIR7-3HGQ8N6C7 128 aa9.76□□□□□ -0.85
COL3A1-201ENST00000304636 RMI2Q96E14 147 aa9.76□□□□□ -0.85
COL3A1-201ENST00000304636 ODF3BA8MYP8 253 aa9.76□□□□□ -0.85
COL3A1-201ENST00000304636 GYPEP15421 78 aa9.76□□□□□ -0.85
COL3A1-201ENST00000304636 IGLV2-11P01706 119 aa9.75□□□□□ -0.85
COL3A1-201ENST00000304636 DEFB105AQ8NG35 78 aa9.75□□□□□ -0.85
COL3A1-201ENST00000304636 TMEM256-PLSCR3K7ERE1 68 aa9.75□□□□□ -0.85
COL3A1-201ENST00000304636 P0DMU3 169 aa9.75□□□□□ -0.85
COL3A1-201ENST00000304636 FAM231AP0DMU4 169 aa9.75□□□□□ -0.85
COL3A1-201ENST00000304636 FAM231CP0DMU5 169 aa9.75□□□□□ -0.85
COL3A1-201ENST00000304636 CXCL5P42830 114 aa9.74□□□□□ -0.85
COL3A1-201ENST00000304636 FREM1Q5H8C1 2179 aa9.74□□□□□ -0.85
COL3A1-201ENST00000304636 WISP2O76076 250 aa9.74□□□□□ -0.85
COL3A1-201ENST00000304636 LINC00310P59036 64 aa9.74□□□□□ -0.85
COL3A1-201ENST00000304636 ODF3Q96PU9 254 aa9.74□□□□□ -0.85
COL3A1-201ENST00000304636 TMEM223A0PJW6 202 aa9.74□□□□□ -0.85
COL3A1-201ENST00000304636 TRBV12-3P01733 135 aa9.74□□□□□ -0.85
COL3A1-201ENST00000304636 HIST2H2BDQ6DRA6 164 aa9.74□□□□□ -0.85
COL3A1-201ENST00000304636 WFDC9Q8NEX5 89 aa9.74□□□□□ -0.85
COL3A1-201ENST00000304636 C2orf16Q68DN1 1984 aa9.74□□□□□ -0.85
COL3A1-201ENST00000304636 UQCRQO14949 82 aa9.73□□□□□ -0.85
COL3A1-201ENST00000304636 ABCA4P78363 2273 aa9.73□□□□□ -0.85
COL3A1-201ENST00000304636 CEMP1Q6PRD7 247 aaPredicted RBP9.73□□□□□ -0.85
COL3A1-201ENST00000304636 IGHV4-30-2A0A087WSY4 118 aa9.73□□□□□ -0.85
COL3A1-201ENST00000304636 C10orf105Q8TEF2 133 aa9.73□□□□□ -0.85
COL3A1-201ENST00000304636 LTBP2Q14767 1821 aa9.73□□□□□ -0.85
COL3A1-201ENST00000304636 SPATA25Q9BR10 227 aa9.73□□□□□ -0.85
COL3A1-201ENST00000304636 Q9HAA7 133 aa9.73□□□□□ -0.85
COL3A1-201ENST00000304636 TNRC6BQ9UPQ9 1833 aaKnown RBP9.73□□□□□ -0.85
COL3A1-201ENST00000304636 TRBV10-1A0A0K0K1A3 114 aa9.72□□□□□ -0.85
COL3A1-201ENST00000304636 TRBV30A0A0K0K1B3 111 aa9.72□□□□□ -0.85
COL3A1-201ENST00000304636 Q8N976 141 aa9.72□□□□□ -0.85
COL3A1-201ENST00000304636 NBASA2RRP1 2371 aa9.72□□□□□ -0.85
COL3A1-201ENST00000304636 IGHV4-4A0A075B6R2 117 aa9.72□□□□□ -0.85
COL3A1-201ENST00000304636 ZNF22P17026 224 aaPredicted RBP9.72□□□□□ -0.85
COL3A1-201ENST00000304636 NREPQ16612 68 aa9.72□□□□□ -0.85
COL3A1-201ENST00000304636 C14orf132Q9NPU4 83 aa9.72□□□□□ -0.85
COL3A1-201ENST00000304636 IGHV4-28A0A0C4DH34 117 aa9.72□□□□□ -0.85
COL3A1-201ENST00000304636 IGLV10-54A0A075B6I4 117 aa9.71□□□□□ -0.85
COL3A1-201ENST00000304636 CAMK2N2Q96S95 79 aa9.71□□□□□ -0.85
COL3A1-201ENST00000304636 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.71□□□□□ -0.85
COL3A1-201ENST00000304636 NUP210LQ5VU65 1888 aa9.71□□□□□ -0.86
COL3A1-201ENST00000304636 PDE6GP18545 87 aa9.71□□□□□ -0.86
COL3A1-201ENST00000304636 SVIPQ8NHG7 77 aa9.71□□□□□ -0.86
COL3A1-201ENST00000304636 ADORA2A-AS1P86434 159 aa9.71□□□□□ -0.86
COL3A1-201ENST00000304636 FSTL3O95633 263 aa9.7□□□□□ -0.86
COL3A1-201ENST00000304636 FBXL19-AS1Q494R0 122 aa9.7□□□□□ -0.86
COL3A1-201ENST00000304636 NCR3O14931 201 aa9.7□□□□□ -0.86
COL3A1-201ENST00000304636 IGHV3-33P01772 117 aa9.7□□□□□ -0.86
COL3A1-201ENST00000304636 IGKV2D-24A0A075B6R9 120 aa9.7□□□□□ -0.86
COL3A1-201ENST00000304636 SMAD5-AS1Q9Y6J3 95 aa9.7□□□□□ -0.86
COL3A1-201ENST00000304636 CFAP126Q5VTH2 177 aa9.7□□□□□ -0.86
COL3A1-201ENST00000304636 DYSFO75923 2080 aa9.7□□□□□ -0.86
COL3A1-201ENST00000304636 A6NDX4 124 aa9.69□□□□□ -0.86
COL3A1-201ENST00000304636 CHKB-CPT1BH3BT56 60 aa9.69□□□□□ -0.86
COL3A1-201ENST00000304636 TRIAP1O43715 76 aa9.69□□□□□ -0.86
COL3A1-201ENST00000304636 HHLA3Q9XRX5 114 aa9.69□□□□□ -0.86
COL3A1-201ENST00000304636 IGLV4-3A0A075B6K6 122 aa9.69□□□□□ -0.86
COL3A1-201ENST00000304636 ETDCA0A1B0GVM5 59 aa9.69□□□□□ -0.86
COL3A1-201ENST00000304636 PCNX3Q9H6A9 2034 aa9.69□□□□□ -0.86
COL3A1-201ENST00000304636 ZGRF1Q86YA3 2104 aa9.69□□□□□ -0.86
COL3A1-201ENST00000304636 ZFAND3Q9H8U3 227 aa9.69□□□□□ -0.86
COL3A1-201ENST00000304636 LY6LH3BQJ8 138 aa9.68□□□□□ -0.86
COL3A1-201ENST00000304636 IGHV3-30P01768 117 aa9.68□□□□□ -0.86
COL3A1-201ENST00000304636 IGHV3-30-5P0DP03 117 aa9.68□□□□□ -0.86
COL3A1-201ENST00000304636 DAZAP2Q15038 168 aaPredicted RBP9.68□□□□□ -0.86
COL3A1-201ENST00000304636 MED13LQ71F56 2210 aa9.68□□□□□ -0.86
COL3A1-201ENST00000304636 TMEM263Q8WUH6 116 aaKnown RBP9.68□□□□□ -0.86
COL3A1-201ENST00000304636 C20orf173Q96LM9 149 aa9.68□□□□□ -0.86
COL3A1-201ENST00000304636 C3orf22Q8N5N4 141 aa9.68□□□□□ -0.86
COL3A1-201ENST00000304636 NRACQ8N912 160 aa9.68□□□□□ -0.86
COL3A1-201ENST00000304636 LINC01548A6NM66 108 aa9.67□□□□□ -0.86
COL3A1-201ENST00000304636 DIRC1Q969H9 104 aa9.67□□□□□ -0.86
COL3A1-201ENST00000304636 NDUFA1O15239 70 aa9.67□□□□□ -0.86
COL3A1-201ENST00000304636 IGF1P05019 195 aa9.67□□□□□ -0.86
COL3A1-201ENST00000304636 ZFAND2AQ8N6M9 145 aa9.67□□□□□ -0.86
COL3A1-201ENST00000304636 C4orf3Q8WVX3 66 aa9.67□□□□□ -0.86
COL3A1-201ENST00000304636 MED12LQ86YW9 2145 aa9.67□□□□□ -0.86
COL3A1-201ENST00000304636 EBI3Q14213 229 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms