RNA–Protein interactions for RNA: ENST00000295718.6

PTPRN-201, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTPRN, Length 3,784 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-201ENST00000295718 ZNF48Q96MX3 618 aaPredicted RBP10.94□□□□□ -0.66
PTPRN-201ENST00000295718 PIMREGQ9BSJ6 248 aa10.94□□□□□ -0.66
PTPRN-201ENST00000295718 LY6G5BQ8NDX9 201 aa10.93□□□□□ -0.66
PTPRN-201ENST00000295718 UBE2E2Q96LR5 201 aa10.93□□□□□ -0.66
PTPRN-201ENST00000295718 IGHV4-38-2P0DP08 117 aa10.93□□□□□ -0.66
PTPRN-201ENST00000295718 EDN2P20800 178 aa10.93□□□□□ -0.66
PTPRN-201ENST00000295718 CRIP2P52943 208 aaPredicted RBP10.93□□□□□ -0.66
PTPRN-201ENST00000295718 ZMAT4Q9H898 229 aa10.93□□□□□ -0.66
PTPRN-201ENST00000295718 SMG1Q96Q15 3661 aaKnown RBP10.93□□□□□ -0.66
PTPRN-201ENST00000295718 CLPSL1A2RUU4 121 aa10.93□□□□□ -0.66
PTPRN-201ENST00000295718 DEFB131AP59861 70 aa10.93□□□□□ -0.66
PTPRN-201ENST00000295718 TMEM141Q96I45 108 aa10.93□□□□□ -0.66
PTPRN-201ENST00000295718 CARD19Q96LW7 228 aa10.93□□□□□ -0.66
PTPRN-201ENST00000295718 PRRC2AP48634 2157 aaKnown RBP10.93□□□□□ -0.66
PTPRN-201ENST00000295718 FAM223BA6NKX1 122 aa10.92□□□□□ -0.66
PTPRN-201ENST00000295718 ODF3BA8MYP8 253 aa10.92□□□□□ -0.66
PTPRN-201ENST00000295718 NDUFA4O00483 81 aa10.92□□□□□ -0.66
PTPRN-201ENST00000295718 C19orf54Q5BKX5 351 aa10.92□□□□□ -0.66
PTPRN-201ENST00000295718 FAM223AQ8IWN6 122 aa10.92□□□□□ -0.66
PTPRN-201ENST00000295718 A0A1W2PRX2 142 aa10.92□□□□□ -0.66
PTPRN-201ENST00000295718 Q8N1Y9 231 aa10.92□□□□□ -0.66
PTPRN-201ENST00000295718 PRSS47A8MTI9 375 aa10.92□□□□□ -0.66
PTPRN-201ENST00000295718 GAGE5Q13069 117 aa10.92□□□□□ -0.66
PTPRN-201ENST00000295718 GAGE6Q13070 117 aa10.92□□□□□ -0.66
PTPRN-201ENST00000295718 C5orf56Q8N8D9 126 aa10.92□□□□□ -0.66
PTPRN-201ENST00000295718 CCL19Q99731 98 aa10.92□□□□□ -0.66
PTPRN-201ENST00000295718 C11orf68Q9H3H3 251 aaKnown RBP10.92□□□□□ -0.66
PTPRN-201ENST00000295718 ZNF580Q9UK33 172 aa10.92□□□□□ -0.66
PTPRN-201ENST00000295718 IGLV2-18A0A075B6J9 118 aa10.91□□□□□ -0.66
PTPRN-201ENST00000295718 HIST2H2BDQ6DRA6 164 aa10.91□□□□□ -0.66
PTPRN-201ENST00000295718 SPATA25Q9BR10 227 aa10.91□□□□□ -0.66
PTPRN-201ENST00000295718 IFITM1P13164 125 aa10.91□□□□□ -0.66
PTPRN-201ENST00000295718 LINC01620Q4KN68 170 aa10.91□□□□□ -0.66
PTPRN-201ENST00000295718 IGHV1OR15-1A0A075B7D0 117 aa10.91□□□□□ -0.66
PTPRN-201ENST00000295718 GATA3P23771 443 aa10.91□□□□□ -0.66
PTPRN-201ENST00000295718 CNFNQ9BYD5 112 aa10.9□□□□□ -0.66
PTPRN-201ENST00000295718 I3L3M4 83 aa10.9□□□□□ -0.66
PTPRN-201ENST00000295718 IGHV1-69DA0A0B4J2H0 117 aa10.9□□□□□ -0.67
PTPRN-201ENST00000295718 IGHV1-69P01742 117 aa10.9□□□□□ -0.67
PTPRN-201ENST00000295718 TSPEAR-AS2P59090 65 aa10.9□□□□□ -0.67
PTPRN-201ENST00000295718 ASH1LQ9NR48 2969 aaKnown RBP10.9□□□□□ -0.67
PTPRN-201ENST00000295718 GAGE12JA6NER3 117 aa10.89□□□□□ -0.67
PTPRN-201ENST00000295718 K7ENP7 123 aa10.89□□□□□ -0.67
PTPRN-201ENST00000295718 GAGE7O76087 117 aa10.89□□□□□ -0.67
PTPRN-201ENST00000295718 GAGE12FP0CL80 117 aa10.89□□□□□ -0.67
PTPRN-201ENST00000295718 GAGE12GP0CL81 117 aa10.89□□□□□ -0.67
PTPRN-201ENST00000295718 GAGE12IP0CL82 117 aa10.89□□□□□ -0.67
PTPRN-201ENST00000295718 GAGE4Q13068 117 aa10.89□□□□□ -0.67
PTPRN-201ENST00000295718 COL12A1Q99715 3063 aa10.89□□□□□ -0.67
PTPRN-201ENST00000295718 RNASE3P12724 160 aaKnown RBP10.89□□□□□ -0.67
PTPRN-201ENST00000295718 DEFB136Q30KP8 78 aa10.89□□□□□ -0.67
PTPRN-201ENST00000295718 DNAL4O96015 105 aa10.89□□□□□ -0.67
PTPRN-201ENST00000295718 Q6ZSV7 163 aa10.89□□□□□ -0.67
PTPRN-201ENST00000295718 ZNRF2Q8NHG8 242 aa10.89□□□□□ -0.67
PTPRN-201ENST00000295718 PROK1P58294 105 aa10.88□□□□□ -0.67
PTPRN-201ENST00000295718 ADORA2A-AS1P86434 159 aa10.88□□□□□ -0.67
PTPRN-201ENST00000295718 USMG5Q96IX5 58 aa10.88□□□□□ -0.67
PTPRN-201ENST00000295718 SIRPDQ9H106 197 aa10.88□□□□□ -0.67
PTPRN-201ENST00000295718 PRIMA1Q86XR5 153 aa10.88□□□□□ -0.67
PTPRN-201ENST00000295718 UBE2L6O14933 153 aa10.88□□□□□ -0.67
PTPRN-201ENST00000295718 C10orf99Q6UWK7 81 aa10.88□□□□□ -0.67
PTPRN-201ENST00000295718 MRPL53Q96EL3 112 aaKnown RBP10.88□□□□□ -0.67
PTPRN-201ENST00000295718 TRAV4A0A0B4J268 109 aa10.87□□□□□ -0.67
PTPRN-201ENST00000295718 TRBV7-9A0A0J9YWB2 115 aa10.87□□□□□ -0.67
PTPRN-201ENST00000295718 XCL2Q9UBD3 114 aa10.87□□□□□ -0.67
PTPRN-201ENST00000295718 LENEPQ9Y5L5 61 aa10.87□□□□□ -0.67
PTPRN-201ENST00000295718 IGHV4-61A0A0C4DH41 118 aa10.87□□□□□ -0.67
PTPRN-201ENST00000295718 HOXD3P31249 432 aaPredicted RBP10.87□□□□□ -0.67
PTPRN-201ENST00000295718 SMCPP49901 116 aaPredicted RBP10.87□□□□□ -0.67
PTPRN-201ENST00000295718 SRSF2Q01130 221 aaKnown RBP10.87□□□□□ -0.67
PTPRN-201ENST00000295718 SLC25A29Q8N8R3 303 aa10.87□□□□□ -0.67
PTPRN-201ENST00000295718 CSMD1Q96PZ7 3565 aa10.87□□□□□ -0.67
PTPRN-201ENST00000295718 TRGV1A0A0A0MS02 117 aa10.86□□□□□ -0.67
PTPRN-201ENST00000295718 CFHR3Q02985 330 aa10.86□□□□□ -0.67
PTPRN-201ENST00000295718 ZNF292O60281 2723 aa10.86□□□□□ -0.67
PTPRN-201ENST00000295718 PIFOQ8TCI5 191 aa10.86□□□□□ -0.67
PTPRN-201ENST00000295718 TRGV11A0A075B6L2 103 aa10.86□□□□□ -0.67
PTPRN-201ENST00000295718 IGHV3-30-3P0DP02 117 aa10.86□□□□□ -0.67
PTPRN-201ENST00000295718 TCTEX1D4Q5JR98 221 aa10.86□□□□□ -0.67
PTPRN-201ENST00000295718 GAGE2AQ6NT46 116 aa10.86□□□□□ -0.67
PTPRN-201ENST00000295718 LEPROTO15243 131 aa10.85□□□□□ -0.67
PTPRN-201ENST00000295718 GNLYP22749 145 aa10.85□□□□□ -0.67
PTPRN-201ENST00000295718 RHODO00212 210 aa10.85□□□□□ -0.67
PTPRN-201ENST00000295718 IGHV3-30P01768 117 aa10.85□□□□□ -0.67
PTPRN-201ENST00000295718 IGHV3-30-5P0DP03 117 aa10.85□□□□□ -0.67
PTPRN-201ENST00000295718 NRGNQ92686 78 aa10.84□□□□□ -0.67
PTPRN-201ENST00000295718 IGHV3-33P01772 117 aa10.84□□□□□ -0.67
PTPRN-201ENST00000295718 IGHV4-59P01825 116 aa10.84□□□□□ -0.67
PTPRN-201ENST00000295718 Q8N6K4 173 aa10.84□□□□□ -0.67
PTPRN-201ENST00000295718 CDIP1Q9H305 208 aa10.84□□□□□ -0.67
PTPRN-201ENST00000295718 ICOSQ9Y6W8 199 aa10.83□□□□□ -0.68
PTPRN-201ENST00000295718 RELNP78509 3460 aa10.83□□□□□ -0.68
PTPRN-201ENST00000295718 ACANP16112 2415 aa10.83□□□□□ -0.68
PTPRN-201ENST00000295718 TRIAP1O43715 76 aa10.82□□□□□ -0.68
PTPRN-201ENST00000295718 ZNF22P17026 224 aaPredicted RBP10.82□□□□□ -0.68
PTPRN-201ENST00000295718 LINC00158P58513 81 aa10.82□□□□□ -0.68
PTPRN-201ENST00000295718 TIMM17AQ99595 171 aa10.82□□□□□ -0.68
PTPRN-201ENST00000295718 Q9H8V8 135 aa10.82□□□□□ -0.68
PTPRN-201ENST00000295718 A0A0J9YXY3 114 aa10.82□□□□□ -0.68
PTPRN-201ENST00000295718 UBE2D1P51668 147 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms