RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 KIF25-AS1Q9Y6Z4 181 aa12.38□□□□□ -0.43
CPSF4-201ENST00000292476 IGKV2D-26A0A0A0MRZ7 120 aa12.38□□□□□ -0.43
CPSF4-201ENST00000292476 TRAV8-6A0A0B4J262 113 aa12.37□□□□□ -0.43
CPSF4-201ENST00000292476 A8MTW9 85 aa12.37□□□□□ -0.43
CPSF4-201ENST00000292476 GNRH2O43555 120 aa12.37□□□□□ -0.43
CPSF4-201ENST00000292476 TAL2Q16559 108 aa12.37□□□□□ -0.43
CPSF4-201ENST00000292476 SCGB3A1Q96QR1 104 aa12.37□□□□□ -0.43
CPSF4-201ENST00000292476 OR11H12B2RN74 326 aa12.36□□□□□ -0.43
CPSF4-201ENST00000292476 H3BMM0 161 aa12.36□□□□□ -0.43
CPSF4-201ENST00000292476 MGPP08493 103 aa12.36□□□□□ -0.43
CPSF4-201ENST00000292476 GTF2H5Q6ZYL4 71 aa12.36□□□□□ -0.43
CPSF4-201ENST00000292476 CHAC1Q9BUX1 264 aa12.36□□□□□ -0.43
CPSF4-201ENST00000292476 LINC00315P59091 139 aa12.35□□□□□ -0.43
CPSF4-201ENST00000292476 GTSCR1Q86UQ5 136 aa12.35□□□□□ -0.43
CPSF4-201ENST00000292476 NEXN-AS1Q8NBZ9 246 aa12.35□□□□□ -0.43
CPSF4-201ENST00000292476 TRRAPQ9Y4A5 3859 aa12.35□□□□□ -0.43
CPSF4-201ENST00000292476 TRBV25-1A0A075B6N4 114 aa12.35□□□□□ -0.43
CPSF4-201ENST00000292476 C9orf66Q5T8R8 295 aa12.35□□□□□ -0.43
CPSF4-201ENST00000292476 ERASQ7Z444 233 aa12.35□□□□□ -0.43
CPSF4-201ENST00000292476 RPL39LQ96EH5 51 aaKnown RBP12.35□□□□□ -0.43
CPSF4-201ENST00000292476 C2orf66Q6UXQ4 117 aa12.34□□□□□ -0.43
CPSF4-201ENST00000292476 C9orf85Q96MD7 179 aa12.34□□□□□ -0.43
CPSF4-201ENST00000292476 TM2D2Q9BX73 214 aa12.34□□□□□ -0.43
CPSF4-201ENST00000292476 CHTOPQ9Y3Y2 248 aaKnown RBP12.34□□□□□ -0.43
CPSF4-201ENST00000292476 KNCNA6PVL3 124 aa12.33□□□□□ -0.44
CPSF4-201ENST00000292476 IGKV3-20P01619 116 aa12.33□□□□□ -0.44
CPSF4-201ENST00000292476 TCTAP57738 103 aa12.33□□□□□ -0.44
CPSF4-201ENST00000292476 UFSP1Q6NVU6 142 aa12.33□□□□□ -0.44
CPSF4-201ENST00000292476 AMTNQ6UX39 209 aa12.33□□□□□ -0.44
CPSF4-201ENST00000292476 CSTL1Q9H114 145 aa12.33□□□□□ -0.44
CPSF4-201ENST00000292476 TRBV6-5A0A0K0K1A5 114 aa12.32□□□□□ -0.44
CPSF4-201ENST00000292476 GAGE10A6NGK3 116 aa12.32□□□□□ -0.44
CPSF4-201ENST00000292476 ODF3L2Q3SX64 289 aa12.32□□□□□ -0.44
CPSF4-201ENST00000292476 STHQ8IWL8 128 aa12.32□□□□□ -0.44
CPSF4-201ENST00000292476 SYT8Q8NBV8 401 aa12.32□□□□□ -0.44
CPSF4-201ENST00000292476 SMIM13P0DJ93 91 aa12.32□□□□□ -0.44
CPSF4-201ENST00000292476 SPINK13Q1W4C9 94 aa12.32□□□□□ -0.44
CPSF4-201ENST00000292476 BEAN1Q3B7T3 259 aa12.32□□□□□ -0.44
CPSF4-201ENST00000292476 CYSLTR1Q9Y271 337 aa12.32□□□□□ -0.44
CPSF4-201ENST00000292476 TRAV12-3A0A0B4J271 114 aa12.31□□□□□ -0.44
CPSF4-201ENST00000292476 IGHV3-16A0A0C4DH30 117 aa12.31□□□□□ -0.44
CPSF4-201ENST00000292476 K7EP34 96 aa12.31□□□□□ -0.44
CPSF4-201ENST00000292476 CD7P09564 240 aa12.31□□□□□ -0.44
CPSF4-201ENST00000292476 POLR2KP53803 58 aaKnown RBP12.31□□□□□ -0.44
CPSF4-201ENST00000292476 PAPPA-AS1Q5QFB9 102 aa12.31□□□□□ -0.44
CPSF4-201ENST00000292476 CEND1Q8N111 149 aa12.31□□□□□ -0.44
CPSF4-201ENST00000292476 OR5A1Q8NGJ0 315 aa12.31□□□□□ -0.44
CPSF4-201ENST00000292476 RNASE8Q8TDE3 154 aaKnown RBP12.31□□□□□ -0.44
CPSF4-201ENST00000292476 BAALCQ8WXS3 180 aa12.31□□□□□ -0.44
CPSF4-201ENST00000292476 WNK1Q9H4A3 2382 aa12.3□□□□□ -0.44
CPSF4-201ENST00000292476 VCYO14598 125 aa12.3□□□□□ -0.44
CPSF4-201ENST00000292476 H3BUT2 72 aa12.29□□□□□ -0.44
CPSF4-201ENST00000292476 GCSHP23434 173 aa12.29□□□□□ -0.44
CPSF4-201ENST00000292476 SUMO4Q6EEV6 95 aa12.29□□□□□ -0.44
CPSF4-201ENST00000292476 OR11H2Q8NH07 326 aa12.29□□□□□ -0.44
CPSF4-201ENST00000292476 TMEM141Q96I45 108 aa12.29□□□□□ -0.44
CPSF4-201ENST00000292476 CST9LQ9H4G1 147 aa12.29□□□□□ -0.44
CPSF4-201ENST00000292476 A0A1W2PPM0 123 aa12.29□□□□□ -0.44
CPSF4-201ENST00000292476 SPRY2O43597 315 aa12.29□□□□□ -0.44
CPSF4-201ENST00000292476 RBX1P62877 108 aa12.29□□□□□ -0.44
CPSF4-201ENST00000292476 TIMM17AQ99595 171 aa12.29□□□□□ -0.44
CPSF4-201ENST00000292476 KIR2DL4Q99706 377 aa12.29□□□□□ -0.44
CPSF4-201ENST00000292476 FBN3Q75N90 2809 aa12.29□□□□□ -0.44
CPSF4-201ENST00000292476 PKD1L1Q8TDX9 2849 aa12.28□□□□□ -0.44
CPSF4-201ENST00000292476 TRAV12-2A0A075B6T6 113 aa12.28□□□□□ -0.44
CPSF4-201ENST00000292476 IGHV1OR15-1A0A075B7D0 117 aa12.28□□□□□ -0.44
CPSF4-201ENST00000292476 TRBV27A0A0K0K1C4 114 aa12.28□□□□□ -0.44
CPSF4-201ENST00000292476 GAGE12BA1L429 117 aa12.28□□□□□ -0.44
CPSF4-201ENST00000292476 E9PLD3 99 aa12.28□□□□□ -0.44
CPSF4-201ENST00000292476 FXYD2P54710 66 aa12.28□□□□□ -0.44
CPSF4-201ENST00000292476 WFDC9Q8NEX5 89 aa12.28□□□□□ -0.44
CPSF4-201ENST00000292476 TRGV11A0A075B6L2 103 aa12.27□□□□□ -0.45
CPSF4-201ENST00000292476 PRSS29PA6NIE9 313 aa12.27□□□□□ -0.45
CPSF4-201ENST00000292476 MAPKAPK5-AS1Q8N8E1 139 aa12.27□□□□□ -0.45
CPSF4-201ENST00000292476 TTTY13Q9BZ97 58 aa12.27□□□□□ -0.45
CPSF4-201ENST00000292476 MYMXA0A1B0GTQ4 84 aa12.26□□□□□ -0.45
CPSF4-201ENST00000292476 INSP01308 110 aa12.26□□□□□ -0.45
CPSF4-201ENST00000292476 FABP2P12104 132 aa12.26□□□□□ -0.45
CPSF4-201ENST00000292476 ZFP2Q6ZN57 461 aa12.26□□□□□ -0.45
CPSF4-201ENST00000292476 TRPT1Q86TN4 253 aaKnown RBP12.26□□□□□ -0.45
CPSF4-201ENST00000292476 VWFP04275 2813 aa12.26□□□□□ -0.45
CPSF4-201ENST00000292476 NBEAL1Q6ZS30 2694 aa12.26□□□□□ -0.45
CPSF4-201ENST00000292476 IGIPA6NJ69 53 aa12.26□□□□□ -0.45
CPSF4-201ENST00000292476 RHOHQ15669 191 aa12.26□□□□□ -0.45
CPSF4-201ENST00000292476 OCIAD2Q56VL3 154 aa12.26□□□□□ -0.45
CPSF4-201ENST00000292476 PHLDA1Q8WV24 401 aaPredicted RBP12.26□□□□□ -0.45
CPSF4-201ENST00000292476 MGAM2Q2M2H8 2515 aa12.25□□□□□ -0.45
CPSF4-201ENST00000292476 SAMD5Q5TGI4 173 aa12.25□□□□□ -0.45
CPSF4-201ENST00000292476 LINC00467Q9BRT7 94 aa12.25□□□□□ -0.45
CPSF4-201ENST00000292476 EDA2RQ9HAV5 297 aa12.25□□□□□ -0.45
CPSF4-201ENST00000292476 MUC4Q99102 2169 aa12.24□□□□□ -0.45
CPSF4-201ENST00000292476 CMYA5Q8N3K9 4069 aa12.24□□□□□ -0.45
CPSF4-201ENST00000292476 SDHAF1A6NFY7 115 aa12.24□□□□□ -0.45
CPSF4-201ENST00000292476 PMVKQ15126 192 aa12.24□□□□□ -0.45
CPSF4-201ENST00000292476 Q8N1Y9 231 aa12.24□□□□□ -0.45
CPSF4-201ENST00000292476 C1QTNF4Q9BXJ3 329 aa12.24□□□□□ -0.45
CPSF4-201ENST00000292476 TP53TG1Q9Y2A0 90 aa12.24□□□□□ -0.45
CPSF4-201ENST00000292476 TRBV7-3A0A075B6L6 115 aa12.23□□□□□ -0.45
CPSF4-201ENST00000292476 RBMY1BA6NDE4 496 aaKnown RBP12.23□□□□□ -0.45
CPSF4-201ENST00000292476 RBMY1EA6NEQ0 496 aaKnown RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 150.7 ms