RNA–Protein interactions for RNA: ENST00000284767.9

PDLIM3-201, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 2,589 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-201ENST00000284767 APRG1Q8IVJ8 170 aa13.65□□□□□ -0.22
PDLIM3-201ENST00000284767 TRBV7-9A0A0J9YWB2 115 aa13.64□□□□□ -0.23
PDLIM3-201ENST00000284767 FOXI1Q12951 378 aa13.64□□□□□ -0.23
PDLIM3-201ENST00000284767 LYRM7Q5U5X0 104 aa13.64□□□□□ -0.23
PDLIM3-201ENST00000284767 PLEKHB2Q96CS7 222 aa13.64□□□□□ -0.23
PDLIM3-201ENST00000284767 DUX3Q96PT4 197 aa13.64□□□□□ -0.23
PDLIM3-201ENST00000284767 SPRY2O43597 315 aa13.64□□□□□ -0.23
PDLIM3-201ENST00000284767 ELANEP08246 267 aa13.64□□□□□ -0.23
PDLIM3-201ENST00000284767 HERVK_113P61574 105 aa13.64□□□□□ -0.23
PDLIM3-201ENST00000284767 TMEM89A2RUT3 159 aa13.63□□□□□ -0.23
PDLIM3-201ENST00000284767 NXPH4O95158 308 aa13.63□□□□□ -0.23
PDLIM3-201ENST00000284767 TSPAN13O95857 204 aa13.63□□□□□ -0.23
PDLIM3-201ENST00000284767 CRYGDP07320 174 aa13.63□□□□□ -0.23
PDLIM3-201ENST00000284767 HOXD3P31249 432 aaPredicted RBP13.63□□□□□ -0.23
PDLIM3-201ENST00000284767 UBE2D3P61077 147 aa13.63□□□□□ -0.23
PDLIM3-201ENST00000284767 UBE2D2P62837 147 aa13.63□□□□□ -0.23
PDLIM3-201ENST00000284767 ESM1Q9NQ30 184 aa13.63□□□□□ -0.23
PDLIM3-201ENST00000284767 K7EMT4 169 aa13.62□□□□□ -0.23
PDLIM3-201ENST00000284767 CD7P09564 240 aa13.62□□□□□ -0.23
PDLIM3-201ENST00000284767 RNASE3P12724 160 aaKnown RBP13.62□□□□□ -0.23
PDLIM3-201ENST00000284767 RNASE4P34096 147 aaKnown RBP13.62□□□□□ -0.23
PDLIM3-201ENST00000284767 TCTEX1D4Q5JR98 221 aa13.62□□□□□ -0.23
PDLIM3-201ENST00000284767 DNAJC9-AS1A6NH13 148 aa13.62□□□□□ -0.23
PDLIM3-201ENST00000284767 DUSP14O95147 198 aaKnown RBP13.62□□□□□ -0.23
PDLIM3-201ENST00000284767 SMCPP49901 116 aaPredicted RBP13.62□□□□□ -0.23
PDLIM3-201ENST00000284767 WFDC12Q8WWY7 111 aa13.62□□□□□ -0.23
PDLIM3-201ENST00000284767 UBE2E2Q96LR5 201 aa13.62□□□□□ -0.23
PDLIM3-201ENST00000284767 YAE1D1Q9NRH1 226 aa13.62□□□□□ -0.23
PDLIM3-201ENST00000284767 IGLV4-69A0A075B6H9 119 aa13.61□□□□□ -0.23
PDLIM3-201ENST00000284767 C11orf86A6NJI1 115 aa13.61□□□□□ -0.23
PDLIM3-201ENST00000284767 KHDC1LQ5JSQ8 128 aa13.61□□□□□ -0.23
PDLIM3-201ENST00000284767 Q8N2B8 174 aa13.61□□□□□ -0.23
PDLIM3-201ENST00000284767 DCANP1Q8TF63 244 aa13.61□□□□□ -0.23
PDLIM3-201ENST00000284767 GNRH2O43555 120 aa13.6□□□□□ -0.23
PDLIM3-201ENST00000284767 SLURP1P55000 103 aa13.6□□□□□ -0.23
PDLIM3-201ENST00000284767 PMVKQ15126 192 aa13.6□□□□□ -0.23
PDLIM3-201ENST00000284767 TMEM141Q96I45 108 aa13.6□□□□□ -0.23
PDLIM3-201ENST00000284767 LOC107984156A0A0G2JMH3 177 aa13.6□□□□□ -0.23
PDLIM3-201ENST00000284767 A0A0J9YY99 117 aa13.6□□□□□ -0.23
PDLIM3-201ENST00000284767 IGIPA6NJ69 53 aa13.6□□□□□ -0.23
PDLIM3-201ENST00000284767 TSHBP01222 138 aa13.6□□□□□ -0.23
PDLIM3-201ENST00000284767 PSMB2P49721 201 aa13.6□□□□□ -0.23
PDLIM3-201ENST00000284767 Q6ZSV7 163 aa13.6□□□□□ -0.23
PDLIM3-201ENST00000284767 ARL17AQ8IVW1 177 aa13.6□□□□□ -0.23
PDLIM3-201ENST00000284767 C11orf44Q8N8P7 122 aa13.6□□□□□ -0.23
PDLIM3-201ENST00000284767 KIF25-AS1Q9Y6Z4 181 aa13.6□□□□□ -0.23
PDLIM3-201ENST00000284767 KLHL30-AS1Q8NEE0 82 aa13.59□□□□□ -0.23
PDLIM3-201ENST00000284767 SMR3AQ99954 134 aa13.59□□□□□ -0.23
PDLIM3-201ENST00000284767 TP53TG1Q9Y2A0 90 aa13.59□□□□□ -0.23
PDLIM3-201ENST00000284767 LINC00315P59091 139 aa13.59□□□□□ -0.23
PDLIM3-201ENST00000284767 NDUFA11Q86Y39 141 aa13.59□□□□□ -0.23
PDLIM3-201ENST00000284767 RNF152Q8N8N0 203 aa13.59□□□□□ -0.23
PDLIM3-201ENST00000284767 ZFP2Q6ZN57 461 aa13.58□□□□□ -0.24
PDLIM3-201ENST00000284767 ZNF688P0C7X2 276 aa13.58□□□□□ -0.24
PDLIM3-201ENST00000284767 POLR2KP53803 58 aaKnown RBP13.58□□□□□ -0.24
PDLIM3-201ENST00000284767 TIMM17AQ99595 171 aa13.58□□□□□ -0.24
PDLIM3-201ENST00000284767 SYT8Q8NBV8 401 aa13.57□□□□□ -0.24
PDLIM3-201ENST00000284767 TRBV20-1A0A075B6N2 111 aa13.57□□□□□ -0.24
PDLIM3-201ENST00000284767 NFE4Q86UQ8 179 aa13.57□□□□□ -0.24
PDLIM3-201ENST00000284767 VCYO14598 125 aa13.56□□□□□ -0.24
PDLIM3-201ENST00000284767 KIR2DL4Q99706 377 aa13.56□□□□□ -0.24
PDLIM3-201ENST00000284767 CDIP1Q9H305 208 aa13.56□□□□□ -0.24
PDLIM3-201ENST00000284767 WNK1Q9H4A3 2382 aa13.56□□□□□ -0.24
PDLIM3-201ENST00000284767 CKS1BP61024 79 aa13.56□□□□□ -0.24
PDLIM3-201ENST00000284767 IGHV3-30P01768 117 aa13.55□□□□□ -0.24
PDLIM3-201ENST00000284767 IGHV3-30-5P0DP03 117 aa13.55□□□□□ -0.24
PDLIM3-201ENST00000284767 SLC25A29Q8N8R3 303 aa13.55□□□□□ -0.24
PDLIM3-201ENST00000284767 PPDPFLQ8WWR9 84 aa13.55□□□□□ -0.24
PDLIM3-201ENST00000284767 VCX2Q9H322 139 aa13.55□□□□□ -0.24
PDLIM3-201ENST00000284767 SUMO4Q6EEV6 95 aa13.55□□□□□ -0.24
PDLIM3-201ENST00000284767 KLLNB2CW77 178 aa13.54□□□□□ -0.24
PDLIM3-201ENST00000284767 IGKV3-20P01619 116 aa13.54□□□□□ -0.24
PDLIM3-201ENST00000284767 TEN1Q86WV5 123 aa13.54□□□□□ -0.24
PDLIM3-201ENST00000284767 MUC4Q99102 2169 aa13.54□□□□□ -0.24
PDLIM3-201ENST00000284767 NIPBLQ6KC79 2804 aaeCLIP13.54□□□□□ -0.24
PDLIM3-201ENST00000284767 SBSPONQ8IVN8 264 aa13.54□□□□□ -0.24
PDLIM3-201ENST00000284767 ZNF418Q8TF45 676 aaPredicted RBP13.54□□□□□ -0.24
PDLIM3-201ENST00000284767 OTOGQ6ZRI0 2925 aa13.54□□□□□ -0.24
PDLIM3-201ENST00000284767 ZNF876PQ49A33 203 aa13.53□□□□□ -0.24
PDLIM3-201ENST00000284767 SFTA2Q6UW10 78 aa13.53□□□□□ -0.24
PDLIM3-201ENST00000284767 C10orf126Q8N4M7 172 aa13.53□□□□□ -0.24
PDLIM3-201ENST00000284767 LGALS9O00182 355 aa13.53□□□□□ -0.24
PDLIM3-201ENST00000284767 CFC1BP0CG36 223 aa13.53□□□□□ -0.24
PDLIM3-201ENST00000284767 CFC1P0CG37 223 aa13.53□□□□□ -0.24
PDLIM3-201ENST00000284767 EMP1P54849 157 aa13.53□□□□□ -0.24
PDLIM3-201ENST00000284767 FAM159AQ6UWV7 190 aa13.53□□□□□ -0.24
PDLIM3-201ENST00000284767 TMEM86BQ8N661 226 aa13.53□□□□□ -0.24
PDLIM3-201ENST00000284767 TCL1BO95988 128 aa13.52□□□□□ -0.24
PDLIM3-201ENST00000284767 CRYBA4P53673 196 aa13.52□□□□□ -0.24
PDLIM3-201ENST00000284767 TRBV6-5A0A0K0K1A5 114 aa13.52□□□□□ -0.25
PDLIM3-201ENST00000284767 TRBV27A0A0K0K1C4 114 aa13.52□□□□□ -0.25
PDLIM3-201ENST00000284767 ID1P41134 155 aa13.52□□□□□ -0.25
PDLIM3-201ENST00000284767 TSPEAR-AS2P59090 65 aa13.52□□□□□ -0.25
PDLIM3-201ENST00000284767 RPL39P62891 51 aaKnown RBP13.52□□□□□ -0.25
PDLIM3-201ENST00000284767 TMEM170BQ5T4T1 132 aa13.52□□□□□ -0.25
PDLIM3-201ENST00000284767 A0A1W2PRX2 142 aa13.51□□□□□ -0.25
PDLIM3-201ENST00000284767 HIVEP2P31629 2446 aa13.51□□□□□ -0.25
PDLIM3-201ENST00000284767 SDHAF1A6NFY7 115 aa13.51□□□□□ -0.25
PDLIM3-201ENST00000284767 ZNRF2Q8NHG8 242 aa13.51□□□□□ -0.25
PDLIM3-201ENST00000284767 AMELXQ99217 191 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms