RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 KLK9Q2XQG4 91 aa7.52□□□□□ -1.21
LIG3-201ENST00000262327 PSMG4Q5JS54 123 aa7.52□□□□□ -1.21
LIG3-201ENST00000262327 TMEM170BQ5T4T1 132 aa7.52□□□□□ -1.21
LIG3-201ENST00000262327 ZFP2Q6ZN57 461 aa7.52□□□□□ -1.21
LIG3-201ENST00000262327 PTH2Q96A98 100 aa7.52□□□□□ -1.21
LIG3-201ENST00000262327 KLK9Q9UKQ9 250 aa7.52□□□□□ -1.21
LIG3-201ENST00000262327 B4DSR2 109 aa7.51□□□□□ -1.21
LIG3-201ENST00000262327 SUMO4Q6EEV6 95 aa7.51□□□□□ -1.21
LIG3-201ENST00000262327 FAM159AQ6UWV7 190 aa7.51□□□□□ -1.21
LIG3-201ENST00000262327 ATP6V0E2Q8NHE4 81 aa7.51□□□□□ -1.21
LIG3-201ENST00000262327 DUX5Q96PT3 197 aa7.51□□□□□ -1.21
LIG3-201ENST00000262327 A0A096LNT2 108 aa7.51□□□□□ -1.21
LIG3-201ENST00000262327 MSMBP08118 114 aa7.51□□□□□ -1.21
LIG3-201ENST00000262327 HTN1P15515 57 aa7.51□□□□□ -1.21
LIG3-201ENST00000262327 CARD19Q96LW7 228 aa7.51□□□□□ -1.21
LIG3-201ENST00000262327 PSMB2P49721 201 aa7.5□□□□□ -1.21
LIG3-201ENST00000262327 TSPEAR-AS2P59090 65 aa7.5□□□□□ -1.21
LIG3-201ENST00000262327 LINC00315P59091 139 aa7.5□□□□□ -1.21
LIG3-201ENST00000262327 MDFICQ9P1T7 246 aa7.5□□□□□ -1.21
LIG3-201ENST00000262327 LENEPQ9Y5L5 61 aa7.5□□□□□ -1.21
LIG3-201ENST00000262327 CHD6Q8TD26 2715 aa7.5□□□□□ -1.21
LIG3-201ENST00000262327 RHODO00212 210 aa7.5□□□□□ -1.21
LIG3-201ENST00000262327 TAL2Q16559 108 aa7.5□□□□□ -1.21
LIG3-201ENST00000262327 C5orf47Q569G3 176 aa7.5□□□□□ -1.21
LIG3-201ENST00000262327 CFAP126Q5VTH2 177 aa7.5□□□□□ -1.21
LIG3-201ENST00000262327 CSDC2Q9Y534 153 aaKnown RBP7.5□□□□□ -1.21
LIG3-201ENST00000262327 MYO9AB2RTY4 2548 aa7.5□□□□□ -1.21
LIG3-201ENST00000262327 TLN2Q9Y4G6 2542 aa7.5□□□□□ -1.21
LIG3-201ENST00000262327 SDHAF1A6NFY7 115 aa7.5□□□□□ -1.21
LIG3-201ENST00000262327 AVPP01185 164 aa7.5□□□□□ -1.21
LIG3-201ENST00000262327 LINC01356Q8N9X3 169 aa7.5□□□□□ -1.21
LIG3-201ENST00000262327 IGLV4-69A0A075B6H9 119 aa7.49□□□□□ -1.21
LIG3-201ENST00000262327 IGHG2P01859 326 aa7.49□□□□□ -1.21
LIG3-201ENST00000262327 PRM2P04554 102 aa7.49□□□□□ -1.21
LIG3-201ENST00000262327 GAGE2BQ13066 116 aa7.49□□□□□ -1.21
LIG3-201ENST00000262327 ZNF56Q15929 161 aa7.49□□□□□ -1.21
LIG3-201ENST00000262327 GAGE2EQ4V326 116 aa7.49□□□□□ -1.21
LIG3-201ENST00000262327 C3orf56Q8N813 242 aa7.49□□□□□ -1.21
LIG3-201ENST00000262327 FAM19A4Q96LR4 140 aa7.49□□□□□ -1.21
LIG3-201ENST00000262327 DAZ1Q9NQZ3 744 aaKnown RBP7.49□□□□□ -1.21
LIG3-201ENST00000262327 GAGE2DQ9UEU5 116 aa7.49□□□□□ -1.21
LIG3-201ENST00000262327 KIF25-AS1Q9Y6Z4 181 aa7.49□□□□□ -1.21
LIG3-201ENST00000262327 NACAE9PAV3 2078 aa7.49□□□□□ -1.21
LIG3-201ENST00000262327 TTC32Q5I0X7 151 aa7.48□□□□□ -1.21
LIG3-201ENST00000262327 MAPK1IP1LQ8NDC0 245 aa7.48□□□□□ -1.21
LIG3-201ENST00000262327 ZNRF2Q8NHG8 242 aa7.48□□□□□ -1.21
LIG3-201ENST00000262327 PPDPFLQ8WWR9 84 aa7.48□□□□□ -1.21
LIG3-201ENST00000262327 LRRK2Q5S007 2527 aa7.48□□□□□ -1.21
LIG3-201ENST00000262327 IGHV3-73A0A0B4J1V6 119 aa7.48□□□□□ -1.21
LIG3-201ENST00000262327 H7C2G1 150 aa7.48□□□□□ -1.21
LIG3-201ENST00000262327 J3QLI3 93 aa7.48□□□□□ -1.21
LIG3-201ENST00000262327 SPINK13Q1W4C9 94 aa7.48□□□□□ -1.21
LIG3-201ENST00000262327 MEIG1Q5JSS6 88 aa7.48□□□□□ -1.21
LIG3-201ENST00000262327 C2CD3Q4AC94 2353 aa7.48□□□□□ -1.21
LIG3-201ENST00000262327 A4D1N5 150 aa7.47□□□□□ -1.21
LIG3-201ENST00000262327 IGIPA6NJ69 53 aa7.47□□□□□ -1.21
LIG3-201ENST00000262327 IFITM1P13164 125 aa7.47□□□□□ -1.21
LIG3-201ENST00000262327 HIST2H2BDQ6DRA6 164 aa7.47□□□□□ -1.21
LIG3-201ENST00000262327 SETD2Q9BYW2 2564 aaPredicted RBP7.47□□□□□ -1.21
LIG3-201ENST00000262327 MXRA5Q9NR99 2828 aa7.47□□□□□ -1.21
LIG3-201ENST00000262327 POLR2KP53803 58 aaKnown RBP7.47□□□□□ -1.21
LIG3-201ENST00000262327 USMG5Q96IX5 58 aa7.47□□□□□ -1.21
LIG3-201ENST00000262327 ZNF580Q9UK33 172 aa7.47□□□□□ -1.21
LIG3-201ENST00000262327 TRAV4A0A0B4J268 109 aa7.46□□□□□ -1.21
LIG3-201ENST00000262327 A0A0J9YY99 117 aa7.46□□□□□ -1.21
LIG3-201ENST00000262327 A6NDX4 124 aa7.46□□□□□ -1.21
LIG3-201ENST00000262327 PMVKQ15126 192 aa7.46□□□□□ -1.21
LIG3-201ENST00000262327 HIST2H2BCQ6DN03 193 aa7.46□□□□□ -1.21
LIG3-201ENST00000262327 KRTAP1-3Q8IUG1 177 aa7.46□□□□□ -1.21
LIG3-201ENST00000262327 DCANP1Q8TF63 244 aa7.46□□□□□ -1.21
LIG3-201ENST00000262327 ADARB2-AS1A8MUL3 147 aa7.46□□□□□ -1.22
LIG3-201ENST00000262327 KLLNB2CW77 178 aa7.46□□□□□ -1.22
LIG3-201ENST00000262327 Q8N1Y9 231 aa7.46□□□□□ -1.22
LIG3-201ENST00000262327 IGHV4-59P01825 116 aa7.46□□□□□ -1.22
LIG3-201ENST00000262327 RNASE13Q5GAN3 156 aaKnown RBP7.46□□□□□ -1.22
LIG3-201ENST00000262327 TRAV25A0A0B4J276 109 aa7.45□□□□□ -1.22
LIG3-201ENST00000262327 VCYO14598 125 aa7.45□□□□□ -1.22
LIG3-201ENST00000262327 CRLF1O75462 422 aa7.45□□□□□ -1.22
LIG3-201ENST00000262327 P0DMU3 169 aa7.45□□□□□ -1.22
LIG3-201ENST00000262327 FAM231AP0DMU4 169 aa7.45□□□□□ -1.22
LIG3-201ENST00000262327 FAM231CP0DMU5 169 aa7.45□□□□□ -1.22
LIG3-201ENST00000262327 Q96MF0 132 aa7.45□□□□□ -1.22
LIG3-201ENST00000262327 ABCA12Q86UK0 2595 aa7.45□□□□□ -1.22
LIG3-201ENST00000262327 IGHV4-31P0DP07 118 aa7.45□□□□□ -1.22
LIG3-201ENST00000262327 CRIP2P52943 208 aaPredicted RBP7.45□□□□□ -1.22
LIG3-201ENST00000262327 TEN1Q86WV5 123 aa7.45□□□□□ -1.22
LIG3-201ENST00000262327 DLX4Q92988 240 aaPredicted RBP7.45□□□□□ -1.22
LIG3-201ENST00000262327 VCX2Q9H322 139 aa7.45□□□□□ -1.22
LIG3-201ENST00000262327 WNK1Q9H4A3 2382 aa7.45□□□□□ -1.22
LIG3-201ENST00000262327 SNCGO76070 127 aa7.44□□□□□ -1.22
LIG3-201ENST00000262327 UBE2D1P51668 147 aa7.44□□□□□ -1.22
LIG3-201ENST00000262327 SYNJ2BPP57105 145 aa7.44□□□□□ -1.22
LIG3-201ENST00000262327 PROK1P58294 105 aa7.44□□□□□ -1.22
LIG3-201ENST00000262327 HERVK_113P61574 105 aa7.44□□□□□ -1.22
LIG3-201ENST00000262327 CEMP1Q6PRD7 247 aaPredicted RBP7.44□□□□□ -1.22
LIG3-201ENST00000262327 SONP18583 2426 aaKnown RBP7.44□□□□□ -1.22
LIG3-201ENST00000262327 PTPN13Q12923 2485 aa7.44□□□□□ -1.22
LIG3-201ENST00000262327 KNCNA6PVL3 124 aa7.44□□□□□ -1.22
LIG3-201ENST00000262327 TCL1BO95988 128 aa7.44□□□□□ -1.22
LIG3-201ENST00000262327 CFC1BP0CG36 223 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms