RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ZC2HC1BQ5TFG8 222 aa8.56□□□□□ -1.04
VPS4A-201ENST00000254950 hDV102S1A0JD36 115 aa8.56□□□□□ -1.04
VPS4A-201ENST00000254950 RNASE3P12724 160 aaKnown RBP8.56□□□□□ -1.04
VPS4A-201ENST00000254950 GCSHP23434 173 aa8.56□□□□□ -1.04
VPS4A-201ENST00000254950 GATD1Q8NB37 220 aa8.56□□□□□ -1.04
VPS4A-201ENST00000254950 SMIM9A6NGZ8 99 aa8.55□□□□□ -1.04
VPS4A-201ENST00000254950 ATP5G1P05496 136 aa8.55□□□□□ -1.04
VPS4A-201ENST00000254950 CTAG1AP78358 180 aa8.55□□□□□ -1.04
VPS4A-201ENST00000254950 TMEM238LA0A1B0GVL6 79 aa8.55□□□□□ -1.04
VPS4A-201ENST00000254950 A6NJY4 79 aa8.55□□□□□ -1.04
VPS4A-201ENST00000254950 K7EQD1 137 aa8.55□□□□□ -1.04
VPS4A-201ENST00000254950 PMVKQ15126 192 aa8.55□□□□□ -1.04
VPS4A-201ENST00000254950 MEIG1Q5JSS6 88 aa8.55□□□□□ -1.04
VPS4A-201ENST00000254950 TOMM7Q9P0U1 55 aa8.55□□□□□ -1.04
VPS4A-201ENST00000254950 ZNF25P17030 456 aaPredicted RBP8.55□□□□□ -1.04
VPS4A-201ENST00000254950 LGALS9BQ3B8N2 356 aa8.55□□□□□ -1.04
VPS4A-201ENST00000254950 LGALS9CQ6DKI2 356 aa8.55□□□□□ -1.04
VPS4A-201ENST00000254950 ESDP10768 282 aa8.54□□□□□ -1.04
VPS4A-201ENST00000254950 COL5A1-AS1Q5SY13 56 aa8.54□□□□□ -1.04
VPS4A-201ENST00000254950 Q6ZQT7 251 aa8.54□□□□□ -1.04
VPS4A-201ENST00000254950 Q6ZTI0 123 aa8.54□□□□□ -1.04
VPS4A-201ENST00000254950 CRPP02741 224 aa8.54□□□□□ -1.04
VPS4A-201ENST00000254950 CNFNQ9BYD5 112 aa8.54□□□□□ -1.04
VPS4A-201ENST00000254950 TRAV13-1A0A0B4J241 112 aa8.53□□□□□ -1.04
VPS4A-201ENST00000254950 TRAV4A0A0B4J268 109 aa8.53□□□□□ -1.04
VPS4A-201ENST00000254950 DEFB4AO15263 64 aa8.53□□□□□ -1.04
VPS4A-201ENST00000254950 NDUFAF3Q9BU61 184 aa8.53□□□□□ -1.04
VPS4A-201ENST00000254950 IGHV4-4A0A075B6R2 117 aa8.52□□□□□ -1.04
VPS4A-201ENST00000254950 A0A0J9YY99 117 aa8.52□□□□□ -1.04
VPS4A-201ENST00000254950 OXLD1Q5BKU9 147 aa8.52□□□□□ -1.04
VPS4A-201ENST00000254950 ZFP2Q6ZN57 461 aa8.52□□□□□ -1.04
VPS4A-201ENST00000254950 FAM110AQ9BQ89 295 aa8.52□□□□□ -1.04
VPS4A-201ENST00000254950 KIR2DL5BA0A0G2JN68 375 aa8.52□□□□□ -1.05
VPS4A-201ENST00000254950 KIR2DL5BA0A0G2JPC4 375 aa8.52□□□□□ -1.05
VPS4A-201ENST00000254950 TRBV10-1A0A0K0K1A3 114 aa8.52□□□□□ -1.05
VPS4A-201ENST00000254950 KIR2DL5AQ8N109 375 aa8.52□□□□□ -1.05
VPS4A-201ENST00000254950 KIR2DL5BQ8NHK3 375 aa8.52□□□□□ -1.05
VPS4A-201ENST00000254950 C9orf85Q96MD7 179 aa8.52□□□□□ -1.05
VPS4A-201ENST00000254950 TRBV7-3A0A075B6L6 115 aa8.52□□□□□ -1.05
VPS4A-201ENST00000254950 F8VRH5 84 aa8.52□□□□□ -1.05
VPS4A-201ENST00000254950 SCGB1C2P0DMR2 95 aa8.52□□□□□ -1.05
VPS4A-201ENST00000254950 GYPEP15421 78 aa8.52□□□□□ -1.05
VPS4A-201ENST00000254950 GAGE6Q13070 117 aa8.52□□□□□ -1.05
VPS4A-201ENST00000254950 ZNF664Q8N3J9 261 aa8.52□□□□□ -1.05
VPS4A-201ENST00000254950 ZNF815PA8K554 130 aa8.51□□□□□ -1.05
VPS4A-201ENST00000254950 DAZ2Q13117 558 aaKnown RBP8.51□□□□□ -1.05
VPS4A-201ENST00000254950 DAZ4Q86SG3 579 aaKnown RBP8.51□□□□□ -1.05
VPS4A-201ENST00000254950 DAZ3Q9NR90 486 aaKnown RBP8.51□□□□□ -1.05
VPS4A-201ENST00000254950 MRPL35Q9NZE8 188 aaKnown RBP8.51□□□□□ -1.05
VPS4A-201ENST00000254950 A0A096LPF7 62 aa8.51□□□□□ -1.05
VPS4A-201ENST00000254950 RASL10AQ92737 203 aa8.51□□□□□ -1.05
VPS4A-201ENST00000254950 PLEKHB2Q96CS7 222 aa8.51□□□□□ -1.05
VPS4A-201ENST00000254950 RNF185Q96GF1 192 aa8.51□□□□□ -1.05
VPS4A-201ENST00000254950 CHAC1Q9BUX1 264 aa8.51□□□□□ -1.05
VPS4A-201ENST00000254950 STPG4Q8N801 248 aa8.51□□□□□ -1.05
VPS4A-201ENST00000254950 HHLA3Q9XRX5 114 aa8.51□□□□□ -1.05
VPS4A-201ENST00000254950 IGHV3-64A0A075B6Q5 118 aa8.5□□□□□ -1.05
VPS4A-201ENST00000254950 MALP21145 153 aa8.5□□□□□ -1.05
VPS4A-201ENST00000254950 LINC00173Q6ZV60 143 aa8.5□□□□□ -1.05
VPS4A-201ENST00000254950 COPS9Q8WXC6 57 aa8.5□□□□□ -1.05
VPS4A-201ENST00000254950 LYRM7Q5U5X0 104 aa8.5□□□□□ -1.05
VPS4A-201ENST00000254950 ATP6V0E2Q8NHE4 81 aa8.5□□□□□ -1.05
VPS4A-201ENST00000254950 CR1P17927 2039 aa8.5□□□□□ -1.05
VPS4A-201ENST00000254950 FAM222AQ5U5X8 452 aa8.5□□□□□ -1.05
VPS4A-201ENST00000254950 CFAP161Q6P656 301 aa8.5□□□□□ -1.05
VPS4A-201ENST00000254950 AMTNQ6UX39 209 aa8.5□□□□□ -1.05
VPS4A-201ENST00000254950 LYRM9A8MSI8 78 aa8.49□□□□□ -1.05
VPS4A-201ENST00000254950 MRPL23Q16540 153 aaKnown RBP8.49□□□□□ -1.05
VPS4A-201ENST00000254950 SPANXA1Q9NS26 97 aa8.49□□□□□ -1.05
VPS4A-201ENST00000254950 PRO0255Q9UI72 69 aa8.49□□□□□ -1.05
VPS4A-201ENST00000254950 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.49□□□□□ -1.05
VPS4A-201ENST00000254950 IGKV2-29A2NJV5 120 aaPredicted RBP8.49□□□□□ -1.05
VPS4A-201ENST00000254950 MIFP14174 115 aa8.49□□□□□ -1.05
VPS4A-201ENST00000254950 U3KQK5 164 aa8.49□□□□□ -1.05
VPS4A-201ENST00000254950 AGRNO00468 2067 aa8.49□□□□□ -1.05
VPS4A-201ENST00000254950 PRSS29PA6NIE9 313 aa8.49□□□□□ -1.05
VPS4A-201ENST00000254950 SS18Q15532 418 aa8.49□□□□□ -1.05
VPS4A-201ENST00000254950 PRM2P04554 102 aa8.48□□□□□ -1.05
VPS4A-201ENST00000254950 RAB37Q96AX2 223 aa8.48□□□□□ -1.05
VPS4A-201ENST00000254950 ATRQ13535 2644 aa8.48□□□□□ -1.05
VPS4A-201ENST00000254950 PSMB2P49721 201 aa8.48□□□□□ -1.05
VPS4A-201ENST00000254950 LBHQ53QV2 105 aaPredicted RBP8.48□□□□□ -1.05
VPS4A-201ENST00000254950 CFAP126Q5VTH2 177 aa8.48□□□□□ -1.05
VPS4A-201ENST00000254950 UBE2DNLQ8IWF7 75 aa8.48□□□□□ -1.05
VPS4A-201ENST00000254950 ZNF479Q96JC4 524 aa8.48□□□□□ -1.05
VPS4A-201ENST00000254950 Q6ZVH6 145 aa8.48□□□□□ -1.05
VPS4A-201ENST00000254950 SH2D6Q7Z4S9 175 aa8.48□□□□□ -1.05
VPS4A-201ENST00000254950 DKK2Q9UBU2 259 aa8.48□□□□□ -1.05
VPS4A-201ENST00000254950 ITPR1Q14643 2758 aa8.48□□□□□ -1.05
VPS4A-201ENST00000254950 KRTAP24-1Q3LI83 254 aa8.48□□□□□ -1.05
VPS4A-201ENST00000254950 PIK3CD-AS1Q5SR53 167 aa8.48□□□□□ -1.05
VPS4A-201ENST00000254950 CLUHP3Q96NS8 147 aa8.48□□□□□ -1.05
VPS4A-201ENST00000254950 TIMM21Q9BVV7 248 aa8.48□□□□□ -1.05
VPS4A-201ENST00000254950 M0QY20 66 aa8.47□□□□□ -1.05
VPS4A-201ENST00000254950 RS1O15537 224 aa8.47□□□□□ -1.05
VPS4A-201ENST00000254950 BEAN1Q3B7T3 259 aa8.47□□□□□ -1.05
VPS4A-201ENST00000254950 ICOSQ9Y6W8 199 aa8.47□□□□□ -1.05
VPS4A-201ENST00000254950 P0DMU3 169 aa8.47□□□□□ -1.05
VPS4A-201ENST00000254950 FAM231AP0DMU4 169 aa8.47□□□□□ -1.05
VPS4A-201ENST00000254950 FAM231CP0DMU5 169 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms