RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 DNAJC9-AS1A6NH13 148 aa16.39■□□□□ 0.21
CCDC9-201ENST00000221922 C11orf86A6NJI1 115 aa16.39■□□□□ 0.21
CCDC9-201ENST00000221922 DEFB136Q30KP8 78 aa16.39■□□□□ 0.21
CCDC9-201ENST00000221922 AMTNQ6UX39 209 aa16.39■□□□□ 0.21
CCDC9-201ENST00000221922 F5H697 171 aa16.38■□□□□ 0.21
CCDC9-201ENST00000221922 RPL24P83731 157 aaKnown RBP16.38■□□□□ 0.21
CCDC9-201ENST00000221922 MDFICQ9P1T7 246 aa16.38■□□□□ 0.21
CCDC9-201ENST00000221922 TRGV11A0A075B6L2 103 aa16.38■□□□□ 0.21
CCDC9-201ENST00000221922 SDHAF1A6NFY7 115 aa16.38■□□□□ 0.21
CCDC9-201ENST00000221922 SCGB2A2Q13296 93 aa16.38■□□□□ 0.21
CCDC9-201ENST00000221922 Q6ZSV7 163 aa16.38■□□□□ 0.21
CCDC9-201ENST00000221922 NBPF19A0A087WUL8 3843 aa16.37■□□□□ 0.21
CCDC9-201ENST00000221922 KRTAP1-1Q07627 177 aa16.37■□□□□ 0.21
CCDC9-201ENST00000221922 MORN3Q6PF18 240 aaPredicted RBP16.37■□□□□ 0.21
CCDC9-201ENST00000221922 PLEKHB2Q96CS7 222 aa16.37■□□□□ 0.21
CCDC9-201ENST00000221922 RPL39P62891 51 aaKnown RBP16.36■□□□□ 0.21
CCDC9-201ENST00000221922 CD300EQ496F6 205 aaPredicted RBP16.36■□□□□ 0.21
CCDC9-201ENST00000221922 H3BMG7 143 aa16.36■□□□□ 0.21
CCDC9-201ENST00000221922 SPANXB1Q9NS25 103 aaPredicted RBP16.36■□□□□ 0.21
CCDC9-201ENST00000221922 PDZD2O15018 2839 aa16.35■□□□□ 0.21
CCDC9-201ENST00000221922 HERVK_113P61574 105 aa16.35■□□□□ 0.21
CCDC9-201ENST00000221922 WFDC2Q14508 124 aa16.35■□□□□ 0.21
CCDC9-201ENST00000221922 SCGB1D4Q6XE38 83 aa16.35■□□□□ 0.21
CCDC9-201ENST00000221922 ZNF469Q96JG9 3925 aaPredicted RBP16.35■□□□□ 0.21
CCDC9-201ENST00000221922 FLNAP21333 2647 aaKnown RBP16.35■□□□□ 0.21
CCDC9-201ENST00000221922 TMEM238LA0A1B0GVL6 79 aa16.34■□□□□ 0.21
CCDC9-201ENST00000221922 A6NJY4 79 aa16.34■□□□□ 0.21
CCDC9-201ENST00000221922 KLHL30-AS1Q8NEE0 82 aa16.34■□□□□ 0.21
CCDC9-201ENST00000221922 TLN2Q9Y4G6 2542 aa16.34■□□□□ 0.21
CCDC9-201ENST00000221922 A8MTW9 85 aa16.34■□□□□ 0.21
CCDC9-201ENST00000221922 M0QY20 66 aa16.34■□□□□ 0.21
CCDC9-201ENST00000221922 UBE2D1P51668 147 aa16.34■□□□□ 0.21
CCDC9-201ENST00000221922 KHDC1LQ5JSQ8 128 aa16.34■□□□□ 0.21
CCDC9-201ENST00000221922 DEFB131AP59861 70 aa16.33■□□□□ 0.21
CCDC9-201ENST00000221922 ZNF876PQ49A33 203 aa16.33■□□□□ 0.21
CCDC9-201ENST00000221922 FAM74A4Q5TZK3 123 aa16.33■□□□□ 0.21
CCDC9-201ENST00000221922 MYO9AB2RTY4 2548 aa16.33■□□□□ 0.2
CCDC9-201ENST00000221922 PRO0461Q9UI25 63 aa16.33■□□□□ 0.2
CCDC9-201ENST00000221922 SORL1Q92673 2214 aa16.32■□□□□ 0.2
CCDC9-201ENST00000221922 ZNF56Q15929 161 aa16.32■□□□□ 0.2
CCDC9-201ENST00000221922 EMP1P54849 157 aa16.31■□□□□ 0.2
CCDC9-201ENST00000221922 SRSF9Q13242 221 aaKnown RBP eCLIP16.31■□□□□ 0.2
CCDC9-201ENST00000221922 DEFB104AQ8WTQ1 72 aa16.31■□□□□ 0.2
CCDC9-201ENST00000221922 ESM1Q9NQ30 184 aa16.31■□□□□ 0.2
CCDC9-201ENST00000221922 FASNP49327 2511 aaKnown RBP16.31■□□□□ 0.2
CCDC9-201ENST00000221922 A0A0J9YY99 117 aa16.31■□□□□ 0.2
CCDC9-201ENST00000221922 KNCNA6PVL3 124 aa16.31■□□□□ 0.2
CCDC9-201ENST00000221922 RHOHQ15669 191 aa16.31■□□□□ 0.2
CCDC9-201ENST00000221922 NSUN5P1Q3KNT7 163 aa16.31■□□□□ 0.2
CCDC9-201ENST00000221922 GAGE13Q4V321 117 aa16.31■□□□□ 0.2
CCDC9-201ENST00000221922 DYNLRB2Q8TF09 96 aa16.31■□□□□ 0.2
CCDC9-201ENST00000221922 PGPEP1Q9NXJ5 209 aa16.31■□□□□ 0.2
CCDC9-201ENST00000221922 CCDC168Q8NDH2 2452 aa16.3■□□□□ 0.2
CCDC9-201ENST00000221922 TRPT1Q86TN4 253 aaKnown RBP16.3■□□□□ 0.2
CCDC9-201ENST00000221922 TMEM61Q8N0U2 210 aa16.3■□□□□ 0.2
CCDC9-201ENST00000221922 ZNRF2Q8NHG8 242 aa16.3■□□□□ 0.2
CCDC9-201ENST00000221922 H3BMM0 161 aa16.3■□□□□ 0.2
CCDC9-201ENST00000221922 ZNF256Q9Y2P7 627 aaPredicted RBP16.3■□□□□ 0.2
CCDC9-201ENST00000221922 DLX4Q92988 240 aaPredicted RBP16.29■□□□□ 0.2
CCDC9-201ENST00000221922 DUX3Q96PT4 197 aa16.29■□□□□ 0.2
CCDC9-201ENST00000221922 YAE1D1Q9NRH1 226 aa16.29■□□□□ 0.2
CCDC9-201ENST00000221922 MRPL16Q9NX20 251 aaKnown RBP16.28■□□□□ 0.2
CCDC9-201ENST00000221922 TSPEAR-AS2P59090 65 aa16.28■□□□□ 0.2
CCDC9-201ENST00000221922 NFE4Q86UQ8 179 aa16.28■□□□□ 0.2
CCDC9-201ENST00000221922 TMEM170BQ5T4T1 132 aa16.26■□□□□ 0.19
CCDC9-201ENST00000221922 AMELXQ99217 191 aa16.26■□□□□ 0.19
CCDC9-201ENST00000221922 SONP18583 2426 aaKnown RBP16.26■□□□□ 0.19
CCDC9-201ENST00000221922 RBMY1A1P0DJD3 496 aaKnown RBP16.26■□□□□ 0.19
CCDC9-201ENST00000221922 RBMY1CP0DJD4 496 aa16.26■□□□□ 0.19
CCDC9-201ENST00000221922 RBMY1FQ15415 496 aaKnown RBP16.26■□□□□ 0.19
CCDC9-201ENST00000221922 ETDBQ3ZM63 59 aa16.26■□□□□ 0.19
CCDC9-201ENST00000221922 SLC25A29Q8N8R3 303 aa16.26■□□□□ 0.19
CCDC9-201ENST00000221922 J3QR89 54 aa16.25■□□□□ 0.19
CCDC9-201ENST00000221922 P0DMU3 169 aa16.25■□□□□ 0.19
CCDC9-201ENST00000221922 FAM231AP0DMU4 169 aa16.25■□□□□ 0.19
CCDC9-201ENST00000221922 FAM231CP0DMU5 169 aa16.25■□□□□ 0.19
CCDC9-201ENST00000221922 SH2D6Q7Z4S9 175 aa16.25■□□□□ 0.19
CCDC9-201ENST00000221922 MAP6D1Q9H9H5 199 aa16.25■□□□□ 0.19
CCDC9-201ENST00000221922 TSPAN13O95857 204 aa16.25■□□□□ 0.19
CCDC9-201ENST00000221922 DEFB114Q30KQ6 69 aa16.25■□□□□ 0.19
CCDC9-201ENST00000221922 RNASE1P07998 156 aaKnown RBP16.24■□□□□ 0.19
CCDC9-201ENST00000221922 C20orf203Q8NBC4 194 aa16.24■□□□□ 0.19
CCDC9-201ENST00000221922 SPAG8Q99932 426 aaPredicted RBP16.24■□□□□ 0.19
CCDC9-201ENST00000221922 RBMY1BA6NDE4 496 aaKnown RBP16.23■□□□□ 0.19
CCDC9-201ENST00000221922 RBMY1EA6NEQ0 496 aaKnown RBP16.23■□□□□ 0.19
CCDC9-201ENST00000221922 IGHV3-30P01768 117 aa16.23■□□□□ 0.19
CCDC9-201ENST00000221922 RBMY1DP0C7P1 496 aaKnown RBP16.23■□□□□ 0.19
CCDC9-201ENST00000221922 IGHV3-30-5P0DP03 117 aa16.23■□□□□ 0.19
CCDC9-201ENST00000221922 FHL3Q13643 280 aa16.23■□□□□ 0.19
CCDC9-201ENST00000221922 EDA2RQ9HAV5 297 aa16.23■□□□□ 0.19
CCDC9-201ENST00000221922 I3L3M4 83 aa16.23■□□□□ 0.19
CCDC9-201ENST00000221922 J3QQQ9 107 aa16.23■□□□□ 0.19
CCDC9-201ENST00000221922 UBE2D3P61077 147 aa16.23■□□□□ 0.19
CCDC9-201ENST00000221922 UBE2D2P62837 147 aa16.23■□□□□ 0.19
CCDC9-201ENST00000221922 PIK3CD-AS1Q5SR53 167 aa16.23■□□□□ 0.19
CCDC9-201ENST00000221922 NDUFA11Q86Y39 141 aa16.23■□□□□ 0.19
CCDC9-201ENST00000221922 RAX2Q96IS3 184 aa16.23■□□□□ 0.19
CCDC9-201ENST00000221922 C16orf95Q9H693 158 aa16.22■□□□□ 0.19
CCDC9-201ENST00000221922 UNC79Q9P2D8 2635 aa16.22■□□□□ 0.19
CCDC9-201ENST00000221922 ZNF415Q09FC8 603 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms