RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 SPAG11BQ08648 103 aa10.37□□□□□ -0.75
SF3A1-201ENST00000215793 P0C879 139 aa10.37□□□□□ -0.75
SF3A1-201ENST00000215793 UNQ9165/PRO28630Q6UXU0 137 aa10.37□□□□□ -0.75
SF3A1-201ENST00000215793 LINC00574Q9H8X3 128 aa10.37□□□□□ -0.75
SF3A1-201ENST00000215793 IGHV1-58A0A0C4DH39 117 aa10.36□□□□□ -0.75
SF3A1-201ENST00000215793 PRO0255Q9UI72 69 aa10.36□□□□□ -0.75
SF3A1-201ENST00000215793 H3BT86 120 aa10.36□□□□□ -0.75
SF3A1-201ENST00000215793 ATOX1O00244 68 aa10.36□□□□□ -0.75
SF3A1-201ENST00000215793 DEFB135Q30KP9 77 aa10.36□□□□□ -0.75
SF3A1-201ENST00000215793 DAND5Q8N907 189 aa10.36□□□□□ -0.75
SF3A1-201ENST00000215793 TNFRSF13BO14836 293 aaPredicted RBP10.35□□□□□ -0.75
SF3A1-201ENST00000215793 MDFICQ9P1T7 246 aa10.35□□□□□ -0.75
SF3A1-201ENST00000215793 IGKV1D-37A0A075B6S9 117 aa10.35□□□□□ -0.75
SF3A1-201ENST00000215793 B5MCH6 92 aa10.35□□□□□ -0.75
SF3A1-201ENST00000215793 LECT2O14960 151 aa10.35□□□□□ -0.75
SF3A1-201ENST00000215793 MP68P56378 58 aa10.35□□□□□ -0.75
SF3A1-201ENST00000215793 TECTAO75443 2155 aa10.35□□□□□ -0.75
SF3A1-201ENST00000215793 FRMPD3Q5JV73 1810 aa10.34□□□□□ -0.75
SF3A1-201ENST00000215793 F8W735 103 aaPredicted RBP10.34□□□□□ -0.75
SF3A1-201ENST00000215793 DEFB1P60022 68 aa10.34□□□□□ -0.75
SF3A1-201ENST00000215793 SMAD5-AS1Q9Y6J3 95 aa10.34□□□□□ -0.75
SF3A1-201ENST00000215793 SPATA12Q7Z6I5 190 aa10.34□□□□□ -0.75
SF3A1-201ENST00000215793 TRBV10-2A0A0K0K1G8 114 aa10.34□□□□□ -0.75
SF3A1-201ENST00000215793 LGALS9O00182 355 aa10.34□□□□□ -0.75
SF3A1-201ENST00000215793 WFDC2Q14508 124 aa10.34□□□□□ -0.75
SF3A1-201ENST00000215793 Q8NA96 180 aa10.34□□□□□ -0.75
SF3A1-201ENST00000215793 KLK12Q9UKR0 248 aa10.34□□□□□ -0.75
SF3A1-201ENST00000215793 MIR7-3HGQ8N6C7 128 aa10.33□□□□□ -0.76
SF3A1-201ENST00000215793 DIRC1Q969H9 104 aa10.33□□□□□ -0.76
SF3A1-201ENST00000215793 A0A1B0GX51 115 aa10.33□□□□□ -0.76
SF3A1-201ENST00000215793 LOXL1Q08397 574 aaPredicted RBP10.33□□□□□ -0.76
SF3A1-201ENST00000215793 IGHV4-28A0A0C4DH34 117 aa10.33□□□□□ -0.76
SF3A1-201ENST00000215793 TAX1BP3O14907 124 aa10.33□□□□□ -0.76
SF3A1-201ENST00000215793 TRBV12-3P01733 135 aa10.33□□□□□ -0.76
SF3A1-201ENST00000215793 A0A1B0GXF2 115 aa10.32□□□□□ -0.76
SF3A1-201ENST00000215793 PSMB8P28062 276 aa10.32□□□□□ -0.76
SF3A1-201ENST00000215793 LMO4P61968 165 aa10.32□□□□□ -0.76
SF3A1-201ENST00000215793 ODF3BA8MYP8 253 aa10.32□□□□□ -0.76
SF3A1-201ENST00000215793 TNRC6AQ8NDV7 1962 aaKnown RBP10.32□□□□□ -0.76
SF3A1-201ENST00000215793 NCOA6Q14686 2063 aaPredicted RBP10.32□□□□□ -0.76
SF3A1-201ENST00000215793 PROP1O75360 226 aa10.32□□□□□ -0.76
SF3A1-201ENST00000215793 IGKV3D-7A0A0C4DH55 119 aa10.32□□□□□ -0.76
SF3A1-201ENST00000215793 FRMD6-AS1P0C7T7 363 aa10.32□□□□□ -0.76
SF3A1-201ENST00000215793 UBE2AP49459 152 aa10.32□□□□□ -0.76
SF3A1-201ENST00000215793 ODF3Q96PU9 254 aa10.32□□□□□ -0.76
SF3A1-201ENST00000215793 PRR14LQ5THK1 2151 aa10.32□□□□□ -0.76
SF3A1-201ENST00000215793 CCDC140Q96MF4 163 aa10.31□□□□□ -0.76
SF3A1-201ENST00000215793 MAP6D1Q9H9H5 199 aa10.31□□□□□ -0.76
SF3A1-201ENST00000215793 PDE6GP18545 87 aa10.31□□□□□ -0.76
SF3A1-201ENST00000215793 FOXI1Q12951 378 aa10.31□□□□□ -0.76
SF3A1-201ENST00000215793 TMEM256-PLSCR3K7ERE1 68 aa10.3□□□□□ -0.76
SF3A1-201ENST00000215793 NCR3O14931 201 aa10.3□□□□□ -0.76
SF3A1-201ENST00000215793 WISP2O76076 250 aa10.3□□□□□ -0.76
SF3A1-201ENST00000215793 FSTL3O95633 263 aa10.3□□□□□ -0.76
SF3A1-201ENST00000215793 HIGD2BQ4VC39 106 aa10.3□□□□□ -0.76
SF3A1-201ENST00000215793 NAV2Q8IVL1 2488 aa10.3□□□□□ -0.76
SF3A1-201ENST00000215793 C2CD3Q4AC94 2353 aa10.3□□□□□ -0.76
SF3A1-201ENST00000215793 IGF1P05019 195 aa10.3□□□□□ -0.76
SF3A1-201ENST00000215793 FAM236AA0A1B0GUQ0 79 aa10.29□□□□□ -0.76
SF3A1-201ENST00000215793 FAM236BA0A1B0GV22 79 aa10.29□□□□□ -0.76
SF3A1-201ENST00000215793 SMIM20Q8N5G0 67 aa10.29□□□□□ -0.76
SF3A1-201ENST00000215793 NAV3Q8IVL0 2385 aa10.29□□□□□ -0.76
SF3A1-201ENST00000215793 DEFB4AO15263 64 aa10.29□□□□□ -0.76
SF3A1-201ENST00000215793 KLK5Q9Y337 293 aaPredicted RBP10.29□□□□□ -0.76
SF3A1-201ENST00000215793 ZNF80P51504 273 aaPredicted RBP10.29□□□□□ -0.76
SF3A1-201ENST00000215793 CCDC168Q8NDH2 2452 aa10.28□□□□□ -0.76
SF3A1-201ENST00000215793 IGLV2-8P01709 118 aa10.28□□□□□ -0.76
SF3A1-201ENST00000215793 BRWD1-AS2P59051 145 aa10.28□□□□□ -0.76
SF3A1-201ENST00000215793 MLST8Q9BVC4 326 aa10.28□□□□□ -0.76
SF3A1-201ENST00000215793 DNAJC9-AS1A6NH13 148 aa10.28□□□□□ -0.76
SF3A1-201ENST00000215793 IGLC6P0CF74 106 aa10.28□□□□□ -0.76
SF3A1-201ENST00000215793 MIAQ16674 131 aa10.27□□□□□ -0.76
SF3A1-201ENST00000215793 Q6ZUT4 128 aa10.27□□□□□ -0.76
SF3A1-201ENST00000215793 CLEC2BQ92478 149 aa10.27□□□□□ -0.76
SF3A1-201ENST00000215793 DOPEY1Q5JWR5 2465 aa10.27□□□□□ -0.76
SF3A1-201ENST00000215793 LRRC75A-AS1Q8N1F1 130 aa10.27□□□□□ -0.77
SF3A1-201ENST00000215793 NDUFA11Q86Y39 141 aa10.27□□□□□ -0.77
SF3A1-201ENST00000215793 CHKB-CPT1BH3BT56 60 aa10.26□□□□□ -0.77
SF3A1-201ENST00000215793 PLXNB3Q9ULL4 1909 aa10.26□□□□□ -0.77
SF3A1-201ENST00000215793 K7EQG2 157 aa10.26□□□□□ -0.77
SF3A1-201ENST00000215793 LINC00322Q6ZN03 302 aaPredicted RBP10.26□□□□□ -0.77
SF3A1-201ENST00000215793 PIEZO1Q92508 2521 aa10.26□□□□□ -0.77
SF3A1-201ENST00000215793 UFSP1Q6NVU6 142 aa10.25□□□□□ -0.77
SF3A1-201ENST00000215793 C4orf48Q5BLP8 95 aa10.25□□□□□ -0.77
SF3A1-201ENST00000215793 COX7BP24311 80 aa10.25□□□□□ -0.77
SF3A1-201ENST00000215793 WFDC9Q8NEX5 89 aa10.25□□□□□ -0.77
SF3A1-201ENST00000215793 SMIM9A6NGZ8 99 aa10.25□□□□□ -0.77
SF3A1-201ENST00000215793 RNASE8Q8TDE3 154 aaKnown RBP10.25□□□□□ -0.77
SF3A1-201ENST00000215793 LINC01548A6NM66 108 aa10.24□□□□□ -0.77
SF3A1-201ENST00000215793 C5orf47Q569G3 176 aa10.24□□□□□ -0.77
SF3A1-201ENST00000215793 CEMP1Q6PRD7 247 aaPredicted RBP10.24□□□□□ -0.77
SF3A1-201ENST00000215793 HIST2H2BDQ6DRA6 164 aa10.24□□□□□ -0.77
SF3A1-201ENST00000215793 Q6ZTI0 123 aa10.24□□□□□ -0.77
SF3A1-201ENST00000215793 NFE4Q86UQ8 179 aa10.24□□□□□ -0.77
SF3A1-201ENST00000215793 HIVEP3Q5T1R4 2406 aa10.24□□□□□ -0.77
SF3A1-201ENST00000215793 ZFAND2AQ8N6M9 145 aa10.24□□□□□ -0.77
SF3A1-201ENST00000215793 SS18L2Q9UHA2 77 aa10.24□□□□□ -0.77
SF3A1-201ENST00000215793 EBI3Q14213 229 aa10.23□□□□□ -0.77
SF3A1-201ENST00000215793 Q6ZPA2 131 aa10.23□□□□□ -0.77
SF3A1-201ENST00000215793 A0A0J9YXY3 114 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms