RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 ZFP30Q9Y2G7 519 aa6.89□□□□□ -1.31
SCN1A-222ENST00000642141 PHLDA3Q9Y5J5 127 aa6.89□□□□□ -1.31
SCN1A-222ENST00000642141 IGLV5-52A0A0A0MRZ9 124 aa6.88□□□□□ -1.31
SCN1A-222ENST00000642141 MUC21A0A0G2JKD1 596 aa6.88□□□□□ -1.31
SCN1A-222ENST00000642141 MUC21A0A140T8X8 626 aa6.88□□□□□ -1.31
SCN1A-222ENST00000642141 LRCOL1A6NCL2 159 aa6.88□□□□□ -1.31
SCN1A-222ENST00000642141 LECT2O14960 151 aa6.88□□□□□ -1.31
SCN1A-222ENST00000642141 GCSHP23434 173 aa6.88□□□□□ -1.31
SCN1A-222ENST00000642141 AKR1C3P42330 323 aa6.88□□□□□ -1.31
SCN1A-222ENST00000642141 UFSP1Q6NVU6 142 aa6.88□□□□□ -1.31
SCN1A-222ENST00000642141 CDPF1Q6NVV7 123 aa6.88□□□□□ -1.31
SCN1A-222ENST00000642141 ZFP2Q6ZN57 461 aa6.88□□□□□ -1.31
SCN1A-222ENST00000642141 DAZ4Q86SG3 579 aaKnown RBP6.88□□□□□ -1.31
SCN1A-222ENST00000642141 SYT8Q8NBV8 401 aa6.88□□□□□ -1.31
SCN1A-222ENST00000642141 ZNF471Q9BX82 626 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-222ENST00000642141 DAZ3Q9NR90 486 aaKnown RBP6.88□□□□□ -1.31
SCN1A-222ENST00000642141 SCO2A0A1W2PP80 73 aa6.87□□□□□ -1.31
SCN1A-222ENST00000642141 LINC00862A6NCI5 91 aa6.87□□□□□ -1.31
SCN1A-222ENST00000642141 EPM2AB3EWF7 344 aa6.87□□□□□ -1.31
SCN1A-222ENST00000642141 LTAP01374 205 aa6.87□□□□□ -1.31
SCN1A-222ENST00000642141 TPT1P13693 172 aaKnown RBP6.87□□□□□ -1.31
SCN1A-222ENST00000642141 NKX2-5P52952 324 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-222ENST00000642141 RPL19P84098 196 aaKnown RBP6.87□□□□□ -1.31
SCN1A-222ENST00000642141 ZNF674Q2M3X9 581 aa6.87□□□□□ -1.31
SCN1A-222ENST00000642141 SLC7A5P1Q8MH63 180 aa6.87□□□□□ -1.31
SCN1A-222ENST00000642141 DNAJC30Q96LL9 226 aa6.87□□□□□ -1.31
SCN1A-222ENST00000642141 KANTRA0A1W2PQU2 76 aa6.86□□□□□ -1.31
SCN1A-222ENST00000642141 HMSDA8MTL9 139 aa6.86□□□□□ -1.31
SCN1A-222ENST00000642141 RAB14P61106 215 aa6.86□□□□□ -1.31
SCN1A-222ENST00000642141 WFDC2Q14508 124 aa6.86□□□□□ -1.31
SCN1A-222ENST00000642141 TEX261Q6UWH6 196 aa6.86□□□□□ -1.31
SCN1A-222ENST00000642141 C9orf62Q8N4C0 152 aa6.86□□□□□ -1.31
SCN1A-222ENST00000642141 SFRP2Q96HF1 295 aa6.86□□□□□ -1.31
SCN1A-222ENST00000642141 MED9Q9NWA0 146 aa6.86□□□□□ -1.31
SCN1A-222ENST00000642141 A0A0D9SG52 128 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 TRBV6-1A0A0K0K1D8 114 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 BCL2L11O43521 198 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 H2AFB1P0C5Y9 115 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 SEC11BP0C7V7 166 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 LINC00694P0DN24 101 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 CCL20P78556 96 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 LINC01559Q495D7 138 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 CLLU1Q5K131 121 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 PIK3CD-AS1Q5SR53 167 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 DNLZQ5SXM8 178 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 PRR27Q6MZM9 219 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 TMUB2Q71RG4 321 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 COX8CQ7Z4L0 72 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 BAGE2Q86Y30 109 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 ZFP82Q8N141 532 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 Q8N814 137 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 MBD3L1Q8WWY6 194 aa6.85□□□□□ -1.31
SCN1A-222ENST00000642141 UMAD1C9J7I0 102 aa6.84□□□□□ -1.31
SCN1A-222ENST00000642141 RHODO00212 210 aa6.84□□□□□ -1.31
SCN1A-222ENST00000642141 ZNF345Q14585 488 aa6.84□□□□□ -1.31
SCN1A-222ENST00000642141 Q5VSD8 79 aa6.84□□□□□ -1.31
SCN1A-222ENST00000642141 OR10AG1Q8NH19 301 aa6.84□□□□□ -1.31
SCN1A-222ENST00000642141 BAALCQ8WXS3 180 aa6.84□□□□□ -1.31
SCN1A-222ENST00000642141 GNG13Q9P2W3 67 aa6.84□□□□□ -1.31
SCN1A-222ENST00000642141 URGCP-MRPS24S4R325 110 aa6.84□□□□□ -1.31
SCN1A-222ENST00000642141 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-222ENST00000642141 A0A087WWC5 75 aa6.83□□□□□ -1.32
SCN1A-222ENST00000642141 INAFM2P0DMQ5 153 aa6.83□□□□□ -1.32
SCN1A-222ENST00000642141 LINC01620Q4KN68 170 aa6.83□□□□□ -1.32
SCN1A-222ENST00000642141 TCEAL7Q9BRU2 100 aa6.83□□□□□ -1.32
SCN1A-222ENST00000642141 DERL1Q9BUN8 251 aa6.83□□□□□ -1.32
SCN1A-222ENST00000642141 TM2D2Q9BX73 214 aa6.83□□□□□ -1.32
SCN1A-222ENST00000642141 FAM30AQ9NZY2 134 aa6.83□□□□□ -1.32
SCN1A-222ENST00000642141 KLK12Q9UKR0 248 aa6.83□□□□□ -1.32
SCN1A-222ENST00000642141 VPS13BQ7Z7G8 4022 aa6.82□□□□□ -1.32
SCN1A-222ENST00000642141 TRAV8-3A0A0A6YYJ7 113 aa6.82□□□□□ -1.32
SCN1A-222ENST00000642141 TMEM262E9PQX1 116 aa6.82□□□□□ -1.32
SCN1A-222ENST00000642141 F5H697 171 aa6.82□□□□□ -1.32
SCN1A-222ENST00000642141 S100A9P06702 114 aaKnown RBP6.82□□□□□ -1.32
SCN1A-222ENST00000642141 RPL35P42766 123 aaKnown RBP6.82□□□□□ -1.32
SCN1A-222ENST00000642141 LAGE3Q14657 143 aa6.82□□□□□ -1.32
SCN1A-222ENST00000642141 ZNF56Q15929 161 aa6.82□□□□□ -1.32
SCN1A-222ENST00000642141 FRZBQ92765 325 aa6.82□□□□□ -1.32
SCN1A-222ENST00000642141 MLST8Q9BVC4 326 aa6.82□□□□□ -1.32
SCN1A-222ENST00000642141 SRRM2Q9UQ35 2752 aaKnown RBP6.82□□□□□ -1.32
SCN1A-222ENST00000642141 FAT1Q14517 4588 aa6.81□□□□□ -1.32
SCN1A-222ENST00000642141 TRBV7-3A0A075B6L6 115 aa6.81□□□□□ -1.32
SCN1A-222ENST00000642141 IGKV2D-24A0A075B6R9 120 aa6.81□□□□□ -1.32
SCN1A-222ENST00000642141 A0A087WX48 190 aa6.81□□□□□ -1.32
SCN1A-222ENST00000642141 GZMBP10144 247 aa6.81□□□□□ -1.32
SCN1A-222ENST00000642141 RPL36AP83881 106 aaKnown RBP6.81□□□□□ -1.32
SCN1A-222ENST00000642141 SPANXN1Q5VSR9 72 aa6.81□□□□□ -1.32
SCN1A-222ENST00000642141 NIT1Q86X76 327 aa6.81□□□□□ -1.32
SCN1A-222ENST00000642141 NTN5Q8WTR8 489 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-222ENST00000642141 RPL36ALQ969Q0 106 aaKnown RBP6.81□□□□□ -1.32
SCN1A-222ENST00000642141 TPPP3Q9BW30 176 aa6.81□□□□□ -1.32
SCN1A-222ENST00000642141 RAB19A4D1S5 217 aa6.8□□□□□ -1.32
SCN1A-222ENST00000642141 RBFOX3A6NFN3 312 aa6.8□□□□□ -1.32
SCN1A-222ENST00000642141 RAB4BP61018 213 aa6.8□□□□□ -1.32
SCN1A-222ENST00000642141 UBE2D3P61077 147 aa6.8□□□□□ -1.32
SCN1A-222ENST00000642141 UBE2D2P62837 147 aa6.8□□□□□ -1.32
SCN1A-222ENST00000642141 EIF5AP63241 154 aaKnown RBP6.8□□□□□ -1.32
SCN1A-222ENST00000642141 NEXN-AS1Q8NBZ9 246 aa6.8□□□□□ -1.32
SCN1A-222ENST00000642141 UBE2WQ96B02 151 aa6.8□□□□□ -1.32
SCN1A-222ENST00000642141 TRBV10-1A0A0K0K1A3 114 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms