RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 H3BNG1 76 aa9.18□□□□□ -0.94
GTF3A-209ENST00000640289 CIDEAO60543 219 aa9.18□□□□□ -0.94
GTF3A-209ENST00000640289 NTF3P20783 257 aa9.18□□□□□ -0.94
GTF3A-209ENST00000640289 FOXA3P55318 350 aaPredicted RBP9.18□□□□□ -0.94
GTF3A-209ENST00000640289 C14orf178Q8N769 122 aaPredicted RBP9.18□□□□□ -0.94
GTF3A-209ENST00000640289 ALMS1Q8TCU4 4167 aa9.17□□□□□ -0.94
GTF3A-209ENST00000640289 LCE6AA0A183 80 aa9.17□□□□□ -0.94
GTF3A-209ENST00000640289 HIGD1CA8MV81 97 aa9.17□□□□□ -0.94
GTF3A-209ENST00000640289 K7EQD1 137 aa9.17□□□□□ -0.94
GTF3A-209ENST00000640289 RHODO00212 210 aa9.17□□□□□ -0.94
GTF3A-209ENST00000640289 LY6G6CO95867 125 aa9.17□□□□□ -0.94
GTF3A-209ENST00000640289 GYPEP15421 78 aa9.17□□□□□ -0.94
GTF3A-209ENST00000640289 PNRC1Q12796 327 aaPredicted RBP9.17□□□□□ -0.94
GTF3A-209ENST00000640289 AP1S3Q96PC3 154 aa9.17□□□□□ -0.94
GTF3A-209ENST00000640289 CNFNQ9BYD5 112 aa9.17□□□□□ -0.94
GTF3A-209ENST00000640289 GFRA4Q9GZZ7 299 aa9.17□□□□□ -0.94
GTF3A-209ENST00000640289 ICOSQ9Y6W8 199 aa9.17□□□□□ -0.94
GTF3A-209ENST00000640289 KIF25-AS1Q9Y6Z4 181 aa9.17□□□□□ -0.94
GTF3A-209ENST00000640289 TRBV6-4A0A1B0GX49 114 aa9.16□□□□□ -0.94
GTF3A-209ENST00000640289 FAM231BA6NCW3 169 aa9.16□□□□□ -0.94
GTF3A-209ENST00000640289 TWIST1Q15672 202 aa9.16□□□□□ -0.94
GTF3A-209ENST00000640289 RNF212Q495C1 297 aa9.16□□□□□ -0.94
GTF3A-209ENST00000640289 LGALS9CQ6DKI2 356 aa9.16□□□□□ -0.94
GTF3A-209ENST00000640289 WDR73Q6P4I2 378 aa9.16□□□□□ -0.94
GTF3A-209ENST00000640289 LYSTQ99698 3801 aa9.16□□□□□ -0.94
GTF3A-209ENST00000640289 SEC11CQ9BY50 192 aa9.16□□□□□ -0.94
GTF3A-209ENST00000640289 Q9UF83 564 aa9.16□□□□□ -0.94
GTF3A-209ENST00000640289 KMT2CQ8NEZ4 4911 aaKnown RBP9.15□□□□□ -0.94
GTF3A-209ENST00000640289 SMIM17P0DL12 118 aa9.15□□□□□ -0.94
GTF3A-209ENST00000640289 EVI2AP22794 236 aa9.15□□□□□ -0.94
GTF3A-209ENST00000640289 LINC00315P59091 139 aa9.15□□□□□ -0.94
GTF3A-209ENST00000640289 RHOHQ15669 191 aa9.15□□□□□ -0.94
GTF3A-209ENST00000640289 ZNF56Q15929 161 aa9.15□□□□□ -0.94
GTF3A-209ENST00000640289 NUP35Q8NFH5 326 aa9.15□□□□□ -0.94
GTF3A-209ENST00000640289 PRADC1Q9BSG0 188 aa9.15□□□□□ -0.94
GTF3A-209ENST00000640289 NACAE9PAV3 2078 aa9.15□□□□□ -0.94
GTF3A-209ENST00000640289 SMIM27A0A1W2PRY6 76 aa9.14□□□□□ -0.95
GTF3A-209ENST00000640289 MGPP08493 103 aa9.14□□□□□ -0.95
GTF3A-209ENST00000640289 TRGC1P0CF51 173 aa9.14□□□□□ -0.95
GTF3A-209ENST00000640289 P0DMU3 169 aa9.14□□□□□ -0.95
GTF3A-209ENST00000640289 FAM231AP0DMU4 169 aa9.14□□□□□ -0.95
GTF3A-209ENST00000640289 FAM231CP0DMU5 169 aa9.14□□□□□ -0.95
GTF3A-209ENST00000640289 SRIP30626 198 aa9.14□□□□□ -0.95
GTF3A-209ENST00000640289 MRPL23Q16540 153 aaKnown RBP9.14□□□□□ -0.95
GTF3A-209ENST00000640289 C10orf91Q5T1B1 145 aa9.14□□□□□ -0.95
GTF3A-209ENST00000640289 UBE2DNLQ8IWF7 75 aa9.14□□□□□ -0.95
GTF3A-209ENST00000640289 NAT8BQ9UHF3 227 aa9.14□□□□□ -0.95
GTF3A-209ENST00000640289 A0A1B0GUT8 65 aa9.13□□□□□ -0.95
GTF3A-209ENST00000640289 GAGE12JA6NER3 117 aa9.13□□□□□ -0.95
GTF3A-209ENST00000640289 F5H697 171 aa9.13□□□□□ -0.95
GTF3A-209ENST00000640289 PPP1R2P9O14990 202 aa9.13□□□□□ -0.95
GTF3A-209ENST00000640289 RAB4BP61018 213 aa9.13□□□□□ -0.95
GTF3A-209ENST00000640289 GAGE1Q13065 139 aa9.13□□□□□ -0.95
GTF3A-209ENST00000640289 GAGE4Q13068 117 aa9.13□□□□□ -0.95
GTF3A-209ENST00000640289 GAGE5Q13069 117 aa9.13□□□□□ -0.95
GTF3A-209ENST00000640289 ESRGQ1W209 222 aa9.13□□□□□ -0.95
GTF3A-209ENST00000640289 GAGE13Q4V321 117 aa9.13□□□□□ -0.95
GTF3A-209ENST00000640289 BORCS7Q96B45 105 aa9.13□□□□□ -0.95
GTF3A-209ENST00000640289 ANAPC16Q96DE5 110 aa9.13□□□□□ -0.95
GTF3A-209ENST00000640289 DPH3P1Q9H4G8 78 aa9.13□□□□□ -0.95
GTF3A-209ENST00000640289 LINC00588Q9Y4M8 146 aa9.13□□□□□ -0.95
GTF3A-209ENST00000640289 HYDINQ4G0P3 5121 aa9.12□□□□□ -0.95
GTF3A-209ENST00000640289 MT-ND4LP03901 98 aa9.12□□□□□ -0.95
GTF3A-209ENST00000640289 NEGR1Q7Z3B1 354 aa9.12□□□□□ -0.95
GTF3A-209ENST00000640289 CARHSP1Q9Y2V2 147 aaKnown RBP9.12□□□□□ -0.95
GTF3A-209ENST00000640289 RYR2Q92736 4967 aa9.12□□□□□ -0.95
GTF3A-209ENST00000640289 SACSQ9NZJ4 4579 aa9.11□□□□□ -0.95
GTF3A-209ENST00000640289 DNAH1Q9P2D7 4330 aa9.11□□□□□ -0.95
GTF3A-209ENST00000640289 CCL18P55774 89 aa9.11□□□□□ -0.95
GTF3A-209ENST00000640289 FAM3BP58499 235 aaPredicted RBP9.11□□□□□ -0.95
GTF3A-209ENST00000640289 SLC7A5P1Q8MH63 180 aa9.11□□□□□ -0.95
GTF3A-209ENST00000640289 TENM2Q9NT68 2774 aa9.11□□□□□ -0.95
GTF3A-209ENST00000640289 LINC00694P0DN24 101 aa9.1□□□□□ -0.95
GTF3A-209ENST00000640289 RIGQ13278 110 aa9.1□□□□□ -0.95
GTF3A-209ENST00000640289 SUMO4Q6EEV6 95 aa9.1□□□□□ -0.95
GTF3A-209ENST00000640289 LYPD5Q6UWN5 251 aa9.1□□□□□ -0.95
GTF3A-209ENST00000640289 NEXN-AS1Q8NBZ9 246 aa9.1□□□□□ -0.95
GTF3A-209ENST00000640289 ZNRF2Q8NHG8 242 aa9.1□□□□□ -0.95
GTF3A-209ENST00000640289 TRAV26-2A0A0B4J265 109 aa9.09□□□□□ -0.95
GTF3A-209ENST00000640289 MRPL54Q6P161 138 aaKnown RBP9.09□□□□□ -0.95
GTF3A-209ENST00000640289 SMIM15Q7Z3B0 74 aa9.09□□□□□ -0.95
GTF3A-209ENST00000640289 TRBV10-1A0A0K0K1A3 114 aa9.08□□□□□ -0.96
GTF3A-209ENST00000640289 M0QY20 66 aa9.08□□□□□ -0.96
GTF3A-209ENST00000640289 APOC3P02656 99 aa9.08□□□□□ -0.96
GTF3A-209ENST00000640289 CAMPP49913 170 aa9.08□□□□□ -0.96
GTF3A-209ENST00000640289 CLRN3Q8NCR9 226 aa9.08□□□□□ -0.96
GTF3A-209ENST00000640289 ATP6V0E2Q8NHE4 81 aa9.08□□□□□ -0.96
GTF3A-209ENST00000640289 TMEM191AQ9H0A3 160 aa9.08□□□□□ -0.96
GTF3A-209ENST00000640289 MRPS16Q9Y3D3 137 aaKnown RBP9.08□□□□□ -0.96
GTF3A-209ENST00000640289 VPS13DQ5THJ4 4388 aa9.08□□□□□ -0.96
GTF3A-209ENST00000640289 C7orf77A4D0Y5 90 aa9.07□□□□□ -0.96
GTF3A-209ENST00000640289 RPL36AP83881 106 aaKnown RBP9.07□□□□□ -0.96
GTF3A-209ENST00000640289 SH2D6Q7Z4S9 175 aa9.07□□□□□ -0.96
GTF3A-209ENST00000640289 AMN1Q8IY45 258 aa9.07□□□□□ -0.96
GTF3A-209ENST00000640289 GATD1Q8NB37 220 aa9.07□□□□□ -0.96
GTF3A-209ENST00000640289 RPL36ALQ969Q0 106 aaKnown RBP9.07□□□□□ -0.96
GTF3A-209ENST00000640289 RNF185Q96GF1 192 aa9.07□□□□□ -0.96
GTF3A-209ENST00000640289 CTDSP1Q9GZU7 261 aa9.07□□□□□ -0.96
GTF3A-209ENST00000640289 RYR3Q15413 4870 aa9.06□□□□□ -0.96
GTF3A-209ENST00000640289 IGLV2-18A0A075B6J9 118 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms