RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 C5orf67F2Z3F1 127 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 NDUFB6O95139 128 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 IGLV1-51P01701 117 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 HSD52Q0P140 79 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 SPANXN1Q5VSR9 72 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 MIC13Q5XKP0 118 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 UNQ5815/PRO19632Q6UWF5 114 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 OR10AG1Q8NH19 301 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 DYNLRB2Q8TF09 96 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 AQP10Q96PS8 301 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 TIMM21Q9BVV7 248 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 RPRMQ9NS64 109 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 TMEM242Q9NWH2 141 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 ORMDL1Q9P0S3 153 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 AP4S1Q9Y587 144 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 BRCA2P51587 3418 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 TENM2Q9NT68 2774 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 RTEL1-TNFRSF6BF6WH68 1400 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 ZNF609O15014 1411 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 PZPP20742 1482 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 POLEQ07864 2286 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 ANK1P16157 1881 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 TCHHQ07283 1943 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 FAT4Q6V0I7 4981 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 HTTP42858 3142 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 DCHS1Q96JQ0 3298 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 ZFHX3Q15911 3703 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 C2orf70A6NJV1 201 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 F8W1H4 67 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 H3BRM9 83 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 H3BRN7 92 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 CCDC179H3BU77 68 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 GEMIN2O14893 280 aaKnown RBP1.03□□□□□ -2.24
CD44-239ENST00000639002 PRB4P10163 310 aaPredicted RBP1.03□□□□□ -2.24
CD44-239ENST00000639002 IFITM1P13164 125 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 ADCYAP1P18509 176 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 POLR2JP52435 117 aaKnown RBP1.03□□□□□ -2.24
CD44-239ENST00000639002 S100A10P60903 97 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 NPC2P61916 151 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 CATR1Q13166 79 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 DEFB113Q30KQ7 82 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 PCOTHQ58A44 107 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 COL5A1-AS1Q5SY13 56 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 Q6AWC8 147 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 SLC25A26Q70HW3 274 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 C5orf17Q8NAS9 161 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 PPDPFLQ8WWR9 84 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 DAPK1P53355 1430 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 NSD3Q9BZ95 1437 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 ZFYVE16Q7Z3T8 1539 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 ADGRB1O14514 1584 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 BAZ1AQ9NRL2 1556 aaPredicted RBP1.03□□□□□ -2.24
CD44-239ENST00000639002 NESP48681 1621 aa1.03□□□□□ -2.24
CD44-239ENST00000639002 PTPRFP10586 1907 aa1.03□□□□□ -2.25
CD44-239ENST00000639002 IGF2RP11717 2491 aa1.03□□□□□ -2.25
CD44-239ENST00000639002 CELSR1Q9NYQ6 3014 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 TRAV17A0A0B4J275 112 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 A0A0G2JQZ4 141 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 SPAARA0A1B0GVQ0 90 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 A0A1W2PRS3 328 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 SPINK8P0C7L1 97 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 LINC00032P0C843 101 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 PIRTP0C851 137 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 COX7CP15954 63 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 DEFB103AP81534 67 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 MIR22HGQ0VDD5 57 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 PDE6HQ13956 83 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 BCORL1Q5H9F3 1711 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 C1orf137Q5JT78 98 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 RIF1Q5UIP0 2472 aaKnown RBP1.02□□□□□ -2.25
CD44-239ENST00000639002 FOXI2Q6ZQN5 318 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 ZNF833PQ6ZTB9 187 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 LINC00269Q8N2A0 174 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 Q8N2B8 174 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 TTC9CQ8N5M4 171 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 NBEAQ8NFP9 2946 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 TSKUQ8WUA8 353 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 LINC00526Q96FQ7 95 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 KLK9Q9UKQ9 250 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 ANKRD26Q9UPS8 1709 aa1.02□□□□□ -2.25
CD44-239ENST00000639002 MGAM2Q2M2H8 2515 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 AKAP11Q9UKA4 1901 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 PLXNA2O75051 1894 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 DOCK1Q14185 1865 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 PLXNA4Q9HCM2 1894 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 PHIPQ8WWQ0 1821 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 NWD2Q9ULI1 1742 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 QRICH2Q9H0J4 1663 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 DISP1Q96F81 1524 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 STAB2Q8WWQ8 2551 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 TRBV6-8A0A0A6YYG3 113 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 TCRBV3S1A0A5B6 114 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 TMEM30CPA0ZSE6 113 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 A6NN06 94 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 B4DSR2 109 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 TMEM262E9PQX1 116 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 CCL25O15444 150 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 GYPBP06028 91 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 ATP5EP56381 51 aaPredicted RBP1.01□□□□□ -2.25
CD44-239ENST00000639002 RHOHQ15669 191 aa1.01□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms