RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 CLUHP3Q96NS8 147 aa13.61□□□□□ -0.23
CLN3-263ENST00000637871 SPAG8Q99932 426 aaPredicted RBP13.61□□□□□ -0.23
CLN3-263ENST00000637871 SMIM2Q9BVW6 85 aa13.61□□□□□ -0.23
CLN3-263ENST00000637871 GOLT1BQ9Y3E0 138 aa13.61□□□□□ -0.23
CLN3-263ENST00000637871 TRRAPQ9Y4A5 3859 aa13.61□□□□□ -0.23
CLN3-263ENST00000637871 ADARB2-AS1A8MUL3 147 aa13.61□□□□□ -0.23
CLN3-263ENST00000637871 VWFP04275 2813 aa13.61□□□□□ -0.23
CLN3-263ENST00000637871 HLA-DRB4P13762 266 aa13.61□□□□□ -0.23
CLN3-263ENST00000637871 KIR3DS1Q14943 382 aa13.61□□□□□ -0.23
CLN3-263ENST00000637871 AMTNQ6UX39 209 aa13.61□□□□□ -0.23
CLN3-263ENST00000637871 HLA-DRB4X5D2U9 266 aa13.61□□□□□ -0.23
CLN3-263ENST00000637871 IGHV3-16A0A0C4DH30 117 aa13.6□□□□□ -0.23
CLN3-263ENST00000637871 SUMO2P61956 95 aaKnown RBP13.6□□□□□ -0.23
CLN3-263ENST00000637871 DEFB114Q30KQ6 69 aa13.6□□□□□ -0.23
CLN3-263ENST00000637871 C14orf178Q8N769 122 aaPredicted RBP13.6□□□□□ -0.23
CLN3-263ENST00000637871 DLX4Q92988 240 aaPredicted RBP13.6□□□□□ -0.23
CLN3-263ENST00000637871 GATA1P15976 413 aaPredicted RBP13.59□□□□□ -0.23
CLN3-263ENST00000637871 CMC4P56277 68 aaPredicted RBP13.59□□□□□ -0.23
CLN3-263ENST00000637871 FHL3Q13643 280 aa13.59□□□□□ -0.23
CLN3-263ENST00000637871 DEFB136Q30KP8 78 aa13.59□□□□□ -0.23
CLN3-263ENST00000637871 SLC25A34Q6PIV7 304 aa13.59□□□□□ -0.23
CLN3-263ENST00000637871 TSSC4Q9Y5U2 329 aaPredicted RBP13.59□□□□□ -0.23
CLN3-263ENST00000637871 EREGO14944 169 aa13.58□□□□□ -0.24
CLN3-263ENST00000637871 GAS8-AS1O95177 125 aa13.58□□□□□ -0.24
CLN3-263ENST00000637871 MAJINQ3KP22 176 aa13.58□□□□□ -0.24
CLN3-263ENST00000637871 DUX3Q96PT4 197 aa13.58□□□□□ -0.24
CLN3-263ENST00000637871 KIF25-AS1Q9Y6Z4 181 aa13.58□□□□□ -0.24
CLN3-263ENST00000637871 DEFB131AP59861 70 aa13.57□□□□□ -0.24
CLN3-263ENST00000637871 PIK3CD-AS1Q5SR53 167 aa13.57□□□□□ -0.24
CLN3-263ENST00000637871 SHISA2Q6UWI4 295 aa13.57□□□□□ -0.24
CLN3-263ENST00000637871 RASL10AQ92737 203 aa13.57□□□□□ -0.24
CLN3-263ENST00000637871 SELENOKQ9Y6D0 94 aa13.57□□□□□ -0.24
CLN3-263ENST00000637871 H0Y8G0 127 aa13.57□□□□□ -0.24
CLN3-263ENST00000637871 H3BMM0 161 aa13.57□□□□□ -0.24
CLN3-263ENST00000637871 TMEM61Q8N0U2 210 aa13.57□□□□□ -0.24
CLN3-263ENST00000637871 LINC00467Q9BRT7 94 aa13.57□□□□□ -0.24
CLN3-263ENST00000637871 TRAV26-2A0A0B4J265 109 aa13.56□□□□□ -0.24
CLN3-263ENST00000637871 MGPP08493 103 aa13.56□□□□□ -0.24
CLN3-263ENST00000637871 NUTF2P61970 127 aaKnown RBP13.56□□□□□ -0.24
CLN3-263ENST00000637871 SPINK13Q1W4C9 94 aa13.56□□□□□ -0.24
CLN3-263ENST00000637871 COL5A1-AS1Q5SY13 56 aa13.56□□□□□ -0.24
CLN3-263ENST00000637871 NDUFA11Q86Y39 141 aa13.56□□□□□ -0.24
CLN3-263ENST00000637871 hDV102S1A0JD36 115 aa13.55□□□□□ -0.24
CLN3-263ENST00000637871 CCL24O00175 119 aa13.55□□□□□ -0.24
CLN3-263ENST00000637871 PTH2Q96A98 100 aa13.55□□□□□ -0.24
CLN3-263ENST00000637871 IGKV3-20P01619 116 aa13.54□□□□□ -0.24
CLN3-263ENST00000637871 PRSS1P07477 247 aa13.54□□□□□ -0.24
CLN3-263ENST00000637871 COX8AP10176 69 aa13.54□□□□□ -0.24
CLN3-263ENST00000637871 LINC00315P59091 139 aa13.54□□□□□ -0.24
CLN3-263ENST00000637871 Q8N1Y9 231 aa13.54□□□□□ -0.24
CLN3-263ENST00000637871 RAX2Q96IS3 184 aa13.54□□□□□ -0.24
CLN3-263ENST00000637871 NUDT3O95989 172 aa13.53□□□□□ -0.24
CLN3-263ENST00000637871 ZMAT4Q9H898 229 aa13.53□□□□□ -0.24
CLN3-263ENST00000637871 CMYA5Q8N3K9 4069 aa13.53□□□□□ -0.24
CLN3-263ENST00000637871 TRBV6-5A0A0K0K1A5 114 aa13.53□□□□□ -0.24
CLN3-263ENST00000637871 A0A1B0GV90 55 aa13.53□□□□□ -0.24
CLN3-263ENST00000637871 TCAPO15273 167 aa13.53□□□□□ -0.24
CLN3-263ENST00000637871 SPATA3Q8NHX4 192 aa13.53□□□□□ -0.24
CLN3-263ENST00000637871 MAP6D1Q9H9H5 199 aa13.53□□□□□ -0.24
CLN3-263ENST00000637871 WNK1Q9H4A3 2382 aa13.53□□□□□ -0.24
CLN3-263ENST00000637871 TRAV12-2A0A075B6T6 113 aa13.52□□□□□ -0.25
CLN3-263ENST00000637871 VCYO14598 125 aa13.52□□□□□ -0.25
CLN3-263ENST00000637871 TOMM6Q96B49 74 aa13.52□□□□□ -0.25
CLN3-263ENST00000637871 TRAV12-1A0A0B4J245 112 aa13.51□□□□□ -0.25
CLN3-263ENST00000637871 KNCNA6PVL3 124 aa13.51□□□□□ -0.25
CLN3-263ENST00000637871 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.51□□□□□ -0.25
CLN3-263ENST00000637871 DLEU1O43261 78 aa13.51□□□□□ -0.25
CLN3-263ENST00000637871 FXYD7P58549 80 aa13.51□□□□□ -0.25
CLN3-263ENST00000637871 ZNF256Q9Y2P7 627 aaPredicted RBP13.51□□□□□ -0.25
CLN3-263ENST00000637871 ODF1Q14990 250 aa13.5□□□□□ -0.25
CLN3-263ENST00000637871 CD300EQ496F6 205 aaPredicted RBP13.5□□□□□ -0.25
CLN3-263ENST00000637871 EDA2RQ9HAV5 297 aa13.5□□□□□ -0.25
CLN3-263ENST00000637871 PKD1L1Q8TDX9 2849 aa13.5□□□□□ -0.25
CLN3-263ENST00000637871 CBY3A6NI87 242 aa13.5□□□□□ -0.25
CLN3-263ENST00000637871 SIVA1O15304 175 aa13.5□□□□□ -0.25
CLN3-263ENST00000637871 C18orf15Q96N68 181 aa13.5□□□□□ -0.25
CLN3-263ENST00000637871 MCRIP2Q9BUT9 160 aaKnown RBP13.5□□□□□ -0.25
CLN3-263ENST00000637871 MDFICQ9P1T7 246 aa13.5□□□□□ -0.25
CLN3-263ENST00000637871 DPM2O94777 84 aa13.49□□□□□ -0.25
CLN3-263ENST00000637871 IGKCP01834 107 aa13.49□□□□□ -0.25
CLN3-263ENST00000637871 POLR2KP53803 58 aaKnown RBP13.49□□□□□ -0.25
CLN3-263ENST00000637871 SUMO4Q6EEV6 95 aa13.49□□□□□ -0.25
CLN3-263ENST00000637871 KIR2DL4Q99706 377 aa13.49□□□□□ -0.25
CLN3-263ENST00000637871 CSTL1Q9H114 145 aa13.49□□□□□ -0.25
CLN3-263ENST00000637871 ZMAT5Q9UDW3 170 aaKnown RBP13.49□□□□□ -0.25
CLN3-263ENST00000637871 A0A087WX48 190 aa13.48□□□□□ -0.25
CLN3-263ENST00000637871 F5H697 171 aa13.48□□□□□ -0.25
CLN3-263ENST00000637871 H7C1H1 209 aa13.48□□□□□ -0.25
CLN3-263ENST00000637871 RPL39LQ96EH5 51 aaKnown RBP13.48□□□□□ -0.25
CLN3-263ENST00000637871 FAM110AQ9BQ89 295 aa13.48□□□□□ -0.25
CLN3-263ENST00000637871 SPXQ9BT56 116 aa13.48□□□□□ -0.25
CLN3-263ENST00000637871 ZNF415Q09FC8 603 aa13.47□□□□□ -0.25
CLN3-263ENST00000637871 TRPT1Q86TN4 253 aaKnown RBP13.47□□□□□ -0.25
CLN3-263ENST00000637871 SCGB3A1Q96QR1 104 aa13.47□□□□□ -0.25
CLN3-263ENST00000637871 SPRY2O43597 315 aa13.46□□□□□ -0.25
CLN3-263ENST00000637871 INSP01308 110 aa13.46□□□□□ -0.25
CLN3-263ENST00000637871 PF4P02776 101 aa13.46□□□□□ -0.25
CLN3-263ENST00000637871 CRYGDP07320 174 aa13.46□□□□□ -0.25
CLN3-263ENST00000637871 PLNP26678 52 aa13.46□□□□□ -0.25
CLN3-263ENST00000637871 ZNF876PQ49A33 203 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms