RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 FAM74A4Q5TZK3 123 aa11.69□□□□□ -0.54
CIITA-215ENST00000637439 UBE2WQ96B02 151 aa11.69□□□□□ -0.54
CIITA-215ENST00000637439 AQP10Q96PS8 301 aa11.69□□□□□ -0.54
CIITA-215ENST00000637439 ARMS2P0C7Q2 107 aa11.68□□□□□ -0.54
CIITA-215ENST00000637439 KRTAP10-4P60372 401 aaPredicted RBP11.68□□□□□ -0.54
CIITA-215ENST00000637439 ATRAIDQ6UW56 229 aa11.68□□□□□ -0.54
CIITA-215ENST00000637439 CIRBP-AS1Q8TBR5 109 aa11.68□□□□□ -0.54
CIITA-215ENST00000637439 NKX6-2Q9C056 277 aaPredicted RBP11.68□□□□□ -0.54
CIITA-215ENST00000637439 TRBV10-1A0A0K0K1A3 114 aa11.67□□□□□ -0.54
CIITA-215ENST00000637439 KRBOX1C9JBD0 128 aa11.67□□□□□ -0.54
CIITA-215ENST00000637439 PEX7O00628 323 aa11.67□□□□□ -0.54
CIITA-215ENST00000637439 IGLV2-8P01709 118 aa11.67□□□□□ -0.54
CIITA-215ENST00000637439 Q86TA4 180 aa11.67□□□□□ -0.54
CIITA-215ENST00000637439 HIST1H2BAQ96A08 127 aa11.67□□□□□ -0.54
CIITA-215ENST00000637439 SFRP2Q96HF1 295 aa11.67□□□□□ -0.54
CIITA-215ENST00000637439 DNAJC30Q96LL9 226 aa11.67□□□□□ -0.54
CIITA-215ENST00000637439 PHLDA3Q9Y5J5 127 aa11.67□□□□□ -0.54
CIITA-215ENST00000637439 LRP1Q07954 4544 aaKnown RBP11.67□□□□□ -0.54
CIITA-215ENST00000637439 HMCN2Q8NDA2 5059 aa11.66□□□□□ -0.54
CIITA-215ENST00000637439 TPT1P13693 172 aaKnown RBP11.66□□□□□ -0.54
CIITA-215ENST00000637439 RPL36AP83881 106 aaKnown RBP11.66□□□□□ -0.54
CIITA-215ENST00000637439 RPL36ALQ969Q0 106 aaKnown RBP11.66□□□□□ -0.54
CIITA-215ENST00000637439 ZFP30Q9Y2G7 519 aa11.66□□□□□ -0.54
CIITA-215ENST00000637439 M0R036 132 aa11.65□□□□□ -0.54
CIITA-215ENST00000637439 COX8CQ7Z4L0 72 aa11.65□□□□□ -0.54
CIITA-215ENST00000637439 ZC2HC1AQ96GY0 325 aa11.65□□□□□ -0.54
CIITA-215ENST00000637439 C1orf43Q9BWL3 253 aa11.65□□□□□ -0.54
CIITA-215ENST00000637439 TRBV7-3A0A075B6L6 115 aa11.64□□□□□ -0.55
CIITA-215ENST00000637439 A0A087WWL8 130 aa11.64□□□□□ -0.55
CIITA-215ENST00000637439 CTXND1A0A1B0GTU2 59 aa11.64□□□□□ -0.55
CIITA-215ENST00000637439 GRIFINA4D1Z8 144 aa11.64□□□□□ -0.55
CIITA-215ENST00000637439 UBE2G2P60604 165 aa11.64□□□□□ -0.55
CIITA-215ENST00000637439 UBE2D3P61077 147 aa11.64□□□□□ -0.55
CIITA-215ENST00000637439 UBE2D2P62837 147 aa11.64□□□□□ -0.55
CIITA-215ENST00000637439 FAM162BQ5T6X4 162 aa11.64□□□□□ -0.55
CIITA-215ENST00000637439 ZFP82Q8N141 532 aa11.64□□□□□ -0.55
CIITA-215ENST00000637439 M0R381 172 aa11.63□□□□□ -0.55
CIITA-215ENST00000637439 SH2D1AO60880 128 aa11.63□□□□□ -0.55
CIITA-215ENST00000637439 CRIP1P50238 77 aa11.63□□□□□ -0.55
CIITA-215ENST00000637439 ALG5Q9Y673 324 aa11.63□□□□□ -0.55
CIITA-215ENST00000637439 FAT3Q8TDW7 4589 aa11.63□□□□□ -0.55
CIITA-215ENST00000637439 BORCS7-ASMTA0A0B4J1R7 106 aa11.62□□□□□ -0.55
CIITA-215ENST00000637439 FAM74A7A6NL05 159 aa11.62□□□□□ -0.55
CIITA-215ENST00000637439 TMEM262E9PQX1 116 aa11.62□□□□□ -0.55
CIITA-215ENST00000637439 CRPP02741 224 aa11.62□□□□□ -0.55
CIITA-215ENST00000637439 UBE2G1P62253 170 aa11.62□□□□□ -0.55
CIITA-215ENST00000637439 ZNF726P1Q15940 193 aa11.62□□□□□ -0.55
CIITA-215ENST00000637439 FMC1Q96HJ9 113 aa11.62□□□□□ -0.55
CIITA-215ENST00000637439 LINC01559Q495D7 138 aa11.61□□□□□ -0.55
CIITA-215ENST00000637439 INO80EQ8NBZ0 244 aaPredicted RBP11.61□□□□□ -0.55
CIITA-215ENST00000637439 OR10G8Q8NGN5 311 aa11.61□□□□□ -0.55
CIITA-215ENST00000637439 TRBV6-8A0A0A6YYG3 113 aa11.6□□□□□ -0.55
CIITA-215ENST00000637439 PKIAP61925 76 aa11.6□□□□□ -0.55
CIITA-215ENST00000637439 ZNF674Q2M3X9 581 aa11.6□□□□□ -0.55
CIITA-215ENST00000637439 RPL7L1Q6DKI1 246 aaKnown RBP11.6□□□□□ -0.55
CIITA-215ENST00000637439 ENHOQ6UWT2 76 aa11.6□□□□□ -0.55
CIITA-215ENST00000637439 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.6□□□□□ -0.55
CIITA-215ENST00000637439 TCEAL7Q9BRU2 100 aa11.6□□□□□ -0.55
CIITA-215ENST00000637439 MED28Q9H204 178 aa11.6□□□□□ -0.55
CIITA-215ENST00000637439 PLA2G2DQ9UNK4 145 aa11.6□□□□□ -0.55
CIITA-215ENST00000637439 TMSB15BA0A087X1C1 80 aa11.59□□□□□ -0.55
CIITA-215ENST00000637439 TRBV6-1A0A0K0K1D8 114 aa11.59□□□□□ -0.55
CIITA-215ENST00000637439 RAB4BP61018 213 aa11.59□□□□□ -0.55
CIITA-215ENST00000637439 RPL37AP61513 92 aaKnown RBP11.59□□□□□ -0.55
CIITA-215ENST00000637439 PKHD1L1Q86WI1 4243 aa11.58□□□□□ -0.56
CIITA-215ENST00000637439 AKR1C8PQ5T2L2 129 aa11.58□□□□□ -0.56
CIITA-215ENST00000637439 DGAT2L7PQ6IED9 249 aa11.58□□□□□ -0.56
CIITA-215ENST00000637439 C15orf54Q8N8G6 183 aa11.58□□□□□ -0.56
CIITA-215ENST00000637439 UBR4Q5T4S7 5183 aa11.57□□□□□ -0.56
CIITA-215ENST00000637439 A6NHS1 94 aa11.57□□□□□ -0.56
CIITA-215ENST00000637439 LTAP01374 205 aa11.57□□□□□ -0.56
CIITA-215ENST00000637439 ANGP03950 147 aaKnown RBP11.57□□□□□ -0.56
CIITA-215ENST00000637439 MIAQ16674 131 aa11.57□□□□□ -0.56
CIITA-215ENST00000637439 MPV17L2Q567V2 206 aa11.57□□□□□ -0.56
CIITA-215ENST00000637439 USP17L23D6RBM5 183 aa11.56□□□□□ -0.56
CIITA-215ENST00000637439 GIPP09681 153 aaPredicted RBP11.56□□□□□ -0.56
CIITA-215ENST00000637439 FHITP49789 147 aa11.56□□□□□ -0.56
CIITA-215ENST00000637439 ZNF56Q15929 161 aa11.56□□□□□ -0.56
CIITA-215ENST00000637439 TMEM97Q5BJF2 176 aa11.56□□□□□ -0.56
CIITA-215ENST00000637439 MAP1LC3B2A6NCE7 125 aa11.55□□□□□ -0.56
CIITA-215ENST00000637439 PTTG1O95997 202 aa11.55□□□□□ -0.56
CIITA-215ENST00000637439 HLA-DQA1P01909 254 aa11.55□□□□□ -0.56
CIITA-215ENST00000637439 Q5BKY6 102 aa11.55□□□□□ -0.56
CIITA-215ENST00000637439 PRR27Q6MZM9 219 aa11.55□□□□□ -0.56
CIITA-215ENST00000637439 NEXN-AS1Q8NBZ9 246 aa11.55□□□□□ -0.56
CIITA-215ENST00000637439 CHCHD5Q9BSY4 110 aa11.55□□□□□ -0.56
CIITA-215ENST00000637439 MAP1LC3BQ9GZQ8 125 aa11.55□□□□□ -0.56
CIITA-215ENST00000637439 C9orf163Q8N9P6 203 aa11.54□□□□□ -0.56
CIITA-215ENST00000637439 STOML3Q8TAV4 291 aa11.54□□□□□ -0.56
CIITA-215ENST00000637439 ZNF471Q9BX82 626 aaPredicted RBP11.54□□□□□ -0.56
CIITA-215ENST00000637439 FXYD6-FXYD2A0A087WZ82 144 aa11.53□□□□□ -0.56
CIITA-215ENST00000637439 PRSS1P07477 247 aa11.53□□□□□ -0.56
CIITA-215ENST00000637439 CXCL1P09341 107 aa11.53□□□□□ -0.56
CIITA-215ENST00000637439 AKR1C3P42330 323 aa11.53□□□□□ -0.56
CIITA-215ENST00000637439 CST9LP1Q5W188 147 aa11.53□□□□□ -0.56
CIITA-215ENST00000637439 S100A9P06702 114 aaKnown RBP11.52□□□□□ -0.57
CIITA-215ENST00000637439 RPL19P84098 196 aaKnown RBP11.51□□□□□ -0.57
CIITA-215ENST00000637439 OR10AG1Q8NH19 301 aa11.51□□□□□ -0.57
CIITA-215ENST00000637439 DAZAP1Q96EP5 407 aaKnown RBP11.51□□□□□ -0.57
CIITA-215ENST00000637439 PRR34Q9NV39 138 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms