RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 ERVS71-1P61550 626 aa-2.55□□□□□ -2.82
SCN1A-215ENST00000637285 ARF6P62330 175 aa-2.55□□□□□ -2.82
SCN1A-215ENST00000637285 PAPPAQ13219 1627 aa-2.55□□□□□ -2.82
SCN1A-215ENST00000637285 KDM3BQ7LBC6 1761 aa-2.55□□□□□ -2.82
SCN1A-215ENST00000637285 MORN4Q8NDC4 146 aa-2.55□□□□□ -2.82
SCN1A-215ENST00000637285 WFDC6Q9BQY6 131 aa-2.55□□□□□ -2.82
SCN1A-215ENST00000637285 OTORQ9NRC9 128 aa-2.55□□□□□ -2.82
SCN1A-215ENST00000637285 NUBP2Q9Y5Y2 271 aa-2.55□□□□□ -2.82
SCN1A-215ENST00000637285 PLECQ15149 4684 aaKnown RBP-2.55□□□□□ -2.82
SCN1A-215ENST00000637285 AKAP13Q12802 2813 aa-2.55□□□□□ -2.82
SCN1A-215ENST00000637285 AKR1D1P51857 326 aa-2.56□□□□□ -2.82
SCN1A-215ENST00000637285 MAGOHP61326 146 aaKnown RBP-2.56□□□□□ -2.82
SCN1A-215ENST00000637285 Q5VV11 94 aa-2.56□□□□□ -2.82
SCN1A-215ENST00000637285 CROCCP2Q86T23 111 aa-2.56□□□□□ -2.82
SCN1A-215ENST00000637285 OR51A4Q8NGJ6 313 aa-2.56□□□□□ -2.82
SCN1A-215ENST00000637285 OTOSQ8NHW6 89 aa-2.56□□□□□ -2.82
SCN1A-215ENST00000637285 MED11Q9P086 117 aa-2.56□□□□□ -2.82
SCN1A-215ENST00000637285 PHIPQ8WWQ0 1821 aa-2.56□□□□□ -2.82
SCN1A-215ENST00000637285 CASKIN1Q8WXD9 1431 aa-2.57□□□□□ -2.82
SCN1A-215ENST00000637285 TMEM114B3SHH9 223 aa-2.57□□□□□ -2.82
SCN1A-215ENST00000637285 G3V2T6 193 aa-2.57□□□□□ -2.82
SCN1A-215ENST00000637285 J3KT08 172 aa-2.57□□□□□ -2.82
SCN1A-215ENST00000637285 CETN3O15182 167 aa-2.57□□□□□ -2.82
SCN1A-215ENST00000637285 EDDM3BP56851 147 aa-2.57□□□□□ -2.82
SCN1A-215ENST00000637285 HSPE1P61604 102 aaKnown RBP-2.57□□□□□ -2.82
SCN1A-215ENST00000637285 CCDC42Q96M95 316 aa-2.57□□□□□ -2.82
SCN1A-215ENST00000637285 DSPP15924 2871 aaKnown RBP-2.57□□□□□ -2.82
SCN1A-215ENST00000637285 TCOF1Q13428 1488 aaKnown RBP-2.58□□□□□ -2.82
SCN1A-215ENST00000637285 TRAPPC8Q9Y2L5 1435 aa-2.58□□□□□ -2.82
SCN1A-215ENST00000637285 DNAH9Q9NYC9 4486 aa-2.58□□□□□ -2.82
SCN1A-215ENST00000637285 MAP1LC3B2A6NCE7 125 aa-2.58□□□□□ -2.82
SCN1A-215ENST00000637285 SLC25A6P12236 298 aa-2.58□□□□□ -2.82
SCN1A-215ENST00000637285 GNG5P63218 68 aa-2.58□□□□□ -2.82
SCN1A-215ENST00000637285 RPL19P84098 196 aaKnown RBP-2.58□□□□□ -2.82
SCN1A-215ENST00000637285 LIN52Q52LA3 116 aa-2.58□□□□□ -2.82
SCN1A-215ENST00000637285 NDUFA11Q86Y39 141 aa-2.58□□□□□ -2.82
SCN1A-215ENST00000637285 BORCS8Q96FH0 119 aa-2.58□□□□□ -2.82
SCN1A-215ENST00000637285 LRTM1Q9HBL6 345 aa-2.58□□□□□ -2.82
SCN1A-215ENST00000637285 LAMTOR3Q9UHA4 124 aa-2.58□□□□□ -2.82
SCN1A-215ENST00000637285 IFT172Q9UG01 1749 aa-2.59□□□□□ -2.82
SCN1A-215ENST00000637285 H7C1C5 153 aa-2.59□□□□□ -2.82
SCN1A-215ENST00000637285 CYBAP13498 195 aa-2.59□□□□□ -2.82
SCN1A-215ENST00000637285 LCN6P62502 163 aa-2.59□□□□□ -2.82
SCN1A-215ENST00000637285 TRBV27A0A0K0K1C4 114 aa-2.6□□□□□ -2.83
SCN1A-215ENST00000637285 PPP1R2P41236 205 aa-2.6□□□□□ -2.83
SCN1A-215ENST00000637285 SLC25A26Q70HW3 274 aa-2.6□□□□□ -2.83
SCN1A-215ENST00000637285 TEX29Q8N6K0 151 aa-2.6□□□□□ -2.83
SCN1A-215ENST00000637285 NKIRAS1Q9NYS0 192 aa-2.6□□□□□ -2.83
SCN1A-215ENST00000637285 NDUFAF1Q9Y375 327 aa-2.6□□□□□ -2.83
SCN1A-215ENST00000637285 TEX15Q9BXT5 2789 aa-2.6□□□□□ -2.83
SCN1A-215ENST00000637285 FAM135BQ49AJ0 1406 aa-2.6□□□□□ -2.83
SCN1A-215ENST00000637285 KIF13AQ9H1H9 1805 aa-2.61□□□□□ -2.83
SCN1A-215ENST00000637285 LAMA3Q16787 3333 aa-2.61□□□□□ -2.83
SCN1A-215ENST00000637285 FAM92AA1XBS5 289 aa-2.61□□□□□ -2.83
SCN1A-215ENST00000637285 SMIM6P0DI80 62 aa-2.61□□□□□ -2.83
SCN1A-215ENST00000637285 SPCS2Q15005 226 aa-2.61□□□□□ -2.83
SCN1A-215ENST00000637285 BAGE3Q86Y29 109 aa-2.61□□□□□ -2.83
SCN1A-215ENST00000637285 CARD19Q96LW7 228 aa-2.61□□□□□ -2.83
SCN1A-215ENST00000637285 AGPAT4-IT1Q9H0P7 198 aa-2.61□□□□□ -2.83
SCN1A-215ENST00000637285 PRNDQ9UKY0 176 aa-2.61□□□□□ -2.83
SCN1A-215ENST00000637285 SSR3Q9UNL2 185 aa-2.61□□□□□ -2.83
SCN1A-215ENST00000637285 ANKRD11Q6UB99 2663 aaPredicted RBP-2.61□□□□□ -2.83
SCN1A-215ENST00000637285 NRXN2Q9P2S2 1712 aa-2.62□□□□□ -2.83
SCN1A-215ENST00000637285 PTPRMP28827 1452 aa-2.62□□□□□ -2.83
SCN1A-215ENST00000637285 RPS17P08708 135 aaKnown RBP-2.62□□□□□ -2.83
SCN1A-215ENST00000637285 SDC2P34741 201 aa-2.62□□□□□ -2.83
SCN1A-215ENST00000637285 LSM3P62310 102 aaKnown RBP-2.62□□□□□ -2.83
SCN1A-215ENST00000637285 C9orf16Q9BUW7 83 aa-2.62□□□□□ -2.83
SCN1A-215ENST00000637285 TAS2R8Q9NYW2 309 aa-2.62□□□□□ -2.83
SCN1A-215ENST00000637285 ERG28Q9UKR5 140 aa-2.62□□□□□ -2.83
SCN1A-215ENST00000637285 WDR97A6NE52 1622 aa-2.62□□□□□ -2.83
SCN1A-215ENST00000637285 GOLGA4Q13439 2230 aaKnown RBP-2.62□□□□□ -2.83
SCN1A-215ENST00000637285 CCDC171Q6TFL3 1326 aa-2.63□□□□□ -2.83
SCN1A-215ENST00000637285 MYH1P12882 1939 aa-2.63□□□□□ -2.83
SCN1A-215ENST00000637285 TRAV12-3A0A0B4J271 114 aa-2.63□□□□□ -2.83
SCN1A-215ENST00000637285 PPP5D1E7EU14 171 aa-2.63□□□□□ -2.83
SCN1A-215ENST00000637285 RPP14O95059 124 aaKnown RBP-2.63□□□□□ -2.83
SCN1A-215ENST00000637285 PCBD1P61457 104 aa-2.63□□□□□ -2.83
SCN1A-215ENST00000637285 NUP35Q8NFH5 326 aa-2.63□□□□□ -2.83
SCN1A-215ENST00000637285 ANKRD31Q8N7Z5 1873 aa-2.63□□□□□ -2.83
SCN1A-215ENST00000637285 ACACAQ13085 2346 aa-2.63□□□□□ -2.83
SCN1A-215ENST00000637285 IBTKQ9P2D0 1353 aaPredicted RBP-2.63□□□□□ -2.83
SCN1A-215ENST00000637285 ARFGEF1Q9Y6D6 1849 aa-2.63□□□□□ -2.83
SCN1A-215ENST00000637285 ZFYVE9O95405 1425 aa-2.64□□□□□ -2.83
SCN1A-215ENST00000637285 TRAV2A0A0B4J234 112 aa-2.64□□□□□ -2.83
SCN1A-215ENST00000637285 TRAV13-1A0A0B4J241 112 aa-2.64□□□□□ -2.83
SCN1A-215ENST00000637285 GABARAPH6UMI1 98 aa-2.64□□□□□ -2.83
SCN1A-215ENST00000637285 HBDP02042 147 aa-2.64□□□□□ -2.83
SCN1A-215ENST00000637285 CRYGSP22914 178 aa-2.64□□□□□ -2.83
SCN1A-215ENST00000637285 CRYBA4P53673 196 aa-2.64□□□□□ -2.83
SCN1A-215ENST00000637285 LINC00305Q7Z4B0 112 aa-2.64□□□□□ -2.83
SCN1A-215ENST00000637285 VPS13BQ7Z7G8 4022 aa-2.65□□□□□ -2.83
SCN1A-215ENST00000637285 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-2.65□□□□□ -2.83
SCN1A-215ENST00000637285 PNMA8CA0A1B0GUJ8 204 aa-2.65□□□□□ -2.83
SCN1A-215ENST00000637285 H0YJX3 145 aa-2.65□□□□□ -2.83
SCN1A-215ENST00000637285 PGRMC1O00264 195 aaKnown RBP-2.65□□□□□ -2.83
SCN1A-215ENST00000637285 NCR2O95944 276 aa-2.65□□□□□ -2.83
SCN1A-215ENST00000637285 CSN2P05814 226 aa-2.65□□□□□ -2.83
SCN1A-215ENST00000637285 S100A6P06703 90 aa-2.65□□□□□ -2.83
SCN1A-215ENST00000637285 LSM6P62312 80 aaKnown RBP-2.65□□□□□ -2.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms