RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 DYNLRB2Q8TF09 96 aa11.61□□□□□ -0.55
CLN3-251ENST00000636853 RAX2Q96IS3 184 aa11.61□□□□□ -0.55
CLN3-251ENST00000636853 DPH3P1Q9H4G8 78 aa11.61□□□□□ -0.55
CLN3-251ENST00000636853 TP73-AS1Q9UF72 201 aa11.61□□□□□ -0.55
CLN3-251ENST00000636853 LINC01546A6NGU7 62 aa11.6□□□□□ -0.55
CLN3-251ENST00000636853 MGPP08493 103 aa11.6□□□□□ -0.55
CLN3-251ENST00000636853 Q8N8P6 123 aa11.6□□□□□ -0.55
CLN3-251ENST00000636853 MRAP2Q96G30 205 aa11.6□□□□□ -0.55
CLN3-251ENST00000636853 MTORP42345 2549 aa11.6□□□□□ -0.55
CLN3-251ENST00000636853 A6NDN8 102 aa11.6□□□□□ -0.55
CLN3-251ENST00000636853 AMTNQ6UX39 209 aa11.6□□□□□ -0.55
CLN3-251ENST00000636853 C18orf15Q96N68 181 aa11.6□□□□□ -0.55
CLN3-251ENST00000636853 GAGE10A6NGK3 116 aa11.59□□□□□ -0.55
CLN3-251ENST00000636853 C9orf118A6NHY6 69 aa11.59□□□□□ -0.55
CLN3-251ENST00000636853 FGF6P10767 208 aa11.59□□□□□ -0.55
CLN3-251ENST00000636853 WNK1Q9H4A3 2382 aa11.59□□□□□ -0.55
CLN3-251ENST00000636853 RNASE1P07998 156 aaKnown RBP11.58□□□□□ -0.55
CLN3-251ENST00000636853 LINC01006Q8NI28 216 aa11.58□□□□□ -0.55
CLN3-251ENST00000636853 IFI27L1Q96BM0 104 aa11.58□□□□□ -0.55
CLN3-251ENST00000636853 AP1S3Q96PC3 154 aa11.58□□□□□ -0.55
CLN3-251ENST00000636853 CITED2Q99967 270 aaPredicted RBP11.58□□□□□ -0.55
CLN3-251ENST00000636853 JPT2Q9H910 190 aa11.58□□□□□ -0.55
CLN3-251ENST00000636853 MDFICQ9P1T7 246 aa11.58□□□□□ -0.55
CLN3-251ENST00000636853 FCER1GP30273 86 aa11.58□□□□□ -0.56
CLN3-251ENST00000636853 DEFB114Q30KQ6 69 aa11.58□□□□□ -0.56
CLN3-251ENST00000636853 LGALS9BQ3B8N2 356 aa11.58□□□□□ -0.56
CLN3-251ENST00000636853 LGALS9CQ6DKI2 356 aa11.58□□□□□ -0.56
CLN3-251ENST00000636853 RPL39LQ96EH5 51 aaKnown RBP11.58□□□□□ -0.56
CLN3-251ENST00000636853 NXPH4O95158 308 aa11.57□□□□□ -0.56
CLN3-251ENST00000636853 CD300EQ496F6 205 aaPredicted RBP11.57□□□□□ -0.56
CLN3-251ENST00000636853 ERASQ7Z444 233 aa11.57□□□□□ -0.56
CLN3-251ENST00000636853 BOD1L2Q8IYS8 172 aa11.57□□□□□ -0.56
CLN3-251ENST00000636853 Q8N1Y9 231 aa11.57□□□□□ -0.56
CLN3-251ENST00000636853 TMEM158Q8WZ71 300 aa11.57□□□□□ -0.56
CLN3-251ENST00000636853 RASL10AQ92737 203 aa11.57□□□□□ -0.56
CLN3-251ENST00000636853 IGHV3-16A0A0C4DH30 117 aa11.57□□□□□ -0.56
CLN3-251ENST00000636853 PRSS47A8MTI9 375 aa11.57□□□□□ -0.56
CLN3-251ENST00000636853 CCL24O00175 119 aa11.57□□□□□ -0.56
CLN3-251ENST00000636853 HSD52Q0P140 79 aa11.57□□□□□ -0.56
CLN3-251ENST00000636853 HECTD1Q9ULT8 2610 aa11.57□□□□□ -0.56
CLN3-251ENST00000636853 IGHV1OR15-1A0A075B7D0 117 aa11.56□□□□□ -0.56
CLN3-251ENST00000636853 K7EP34 96 aa11.56□□□□□ -0.56
CLN3-251ENST00000636853 RBMY1A1P0DJD3 496 aaKnown RBP11.56□□□□□ -0.56
CLN3-251ENST00000636853 RBMY1CP0DJD4 496 aa11.56□□□□□ -0.56
CLN3-251ENST00000636853 RBMY1FQ15415 496 aaKnown RBP11.56□□□□□ -0.56
CLN3-251ENST00000636853 TRAV2A0A0B4J234 112 aa11.55□□□□□ -0.56
CLN3-251ENST00000636853 RBMY1BA6NDE4 496 aaKnown RBP11.55□□□□□ -0.56
CLN3-251ENST00000636853 RBMY1EA6NEQ0 496 aaKnown RBP11.55□□□□□ -0.56
CLN3-251ENST00000636853 G3V4G9 280 aa11.55□□□□□ -0.56
CLN3-251ENST00000636853 H3BMM0 161 aa11.55□□□□□ -0.56
CLN3-251ENST00000636853 RBMY1DP0C7P1 496 aaKnown RBP11.55□□□□□ -0.56
CLN3-251ENST00000636853 HLA-DRB4P13762 266 aa11.55□□□□□ -0.56
CLN3-251ENST00000636853 OR5A1Q8NGJ0 315 aa11.55□□□□□ -0.56
CLN3-251ENST00000636853 MAP6D1Q9H9H5 199 aa11.55□□□□□ -0.56
CLN3-251ENST00000636853 KIF25-AS1Q9Y6Z4 181 aa11.55□□□□□ -0.56
CLN3-251ENST00000636853 HLA-DRB4X5D2U9 266 aa11.55□□□□□ -0.56
CLN3-251ENST00000636853 SETD2Q9BYW2 2564 aaPredicted RBP11.55□□□□□ -0.56
CLN3-251ENST00000636853 A0A087WWL8 130 aa11.55□□□□□ -0.56
CLN3-251ENST00000636853 LINC00315P59091 139 aa11.55□□□□□ -0.56
CLN3-251ENST00000636853 FHL3Q13643 280 aa11.55□□□□□ -0.56
CLN3-251ENST00000636853 LAGE3Q14657 143 aa11.55□□□□□ -0.56
CLN3-251ENST00000636853 ZNF418Q8TF45 676 aaPredicted RBP11.55□□□□□ -0.56
CLN3-251ENST00000636853 C9orf85Q96MD7 179 aa11.55□□□□□ -0.56
CLN3-251ENST00000636853 SMIM2Q9BVW6 85 aa11.55□□□□□ -0.56
CLN3-251ENST00000636853 C16orf95Q9H693 158 aa11.55□□□□□ -0.56
CLN3-251ENST00000636853 SMIM17P0DL12 118 aa11.54□□□□□ -0.56
CLN3-251ENST00000636853 SUMO2P61956 95 aaKnown RBP11.54□□□□□ -0.56
CLN3-251ENST00000636853 NEGR1Q7Z3B1 354 aa11.54□□□□□ -0.56
CLN3-251ENST00000636853 SCGB2A2Q13296 93 aa11.53□□□□□ -0.56
CLN3-251ENST00000636853 TSSC4Q9Y5U2 329 aaPredicted RBP11.53□□□□□ -0.56
CLN3-251ENST00000636853 TMEM238C9JI98 176 aa11.53□□□□□ -0.56
CLN3-251ENST00000636853 HTN1P15515 57 aa11.53□□□□□ -0.56
CLN3-251ENST00000636853 HILS1P60008 231 aa11.53□□□□□ -0.56
CLN3-251ENST00000636853 ZNF256Q9Y2P7 627 aaPredicted RBP11.53□□□□□ -0.56
CLN3-251ENST00000636853 DKK2Q9UBU2 259 aa11.52□□□□□ -0.56
CLN3-251ENST00000636853 CHTOPQ9Y3Y2 248 aaKnown RBP11.52□□□□□ -0.56
CLN3-251ENST00000636853 POM121L12Q8N7R1 296 aa11.52□□□□□ -0.57
CLN3-251ENST00000636853 C20orf78Q9BR46 151 aa11.52□□□□□ -0.57
CLN3-251ENST00000636853 A8MTW9 85 aa11.51□□□□□ -0.57
CLN3-251ENST00000636853 PRM2P04554 102 aa11.51□□□□□ -0.57
CLN3-251ENST00000636853 FAM74A4Q5TZK3 123 aa11.51□□□□□ -0.57
CLN3-251ENST00000636853 SPAG8Q99932 426 aaPredicted RBP11.51□□□□□ -0.57
CLN3-251ENST00000636853 HIVEP2P31629 2446 aa11.51□□□□□ -0.57
CLN3-251ENST00000636853 F5H697 171 aa11.51□□□□□ -0.57
CLN3-251ENST00000636853 LY6G6DO95868 133 aa11.51□□□□□ -0.57
CLN3-251ENST00000636853 PRSS1P07477 247 aa11.51□□□□□ -0.57
CLN3-251ENST00000636853 SUMO4Q6EEV6 95 aa11.51□□□□□ -0.57
CLN3-251ENST00000636853 TCTAP57738 103 aa11.5□□□□□ -0.57
CLN3-251ENST00000636853 JMJD8Q96S16 334 aa11.5□□□□□ -0.57
CLN3-251ENST00000636853 TMEM160Q9NX00 188 aa11.5□□□□□ -0.57
CLN3-251ENST00000636853 SYT8Q8NBV8 401 aa11.49□□□□□ -0.57
CLN3-251ENST00000636853 SAP30O75446 220 aa11.49□□□□□ -0.57
CLN3-251ENST00000636853 NOTCH2Q04721 2471 aa11.48□□□□□ -0.57
CLN3-251ENST00000636853 TRGV11A0A075B6L2 103 aa11.48□□□□□ -0.57
CLN3-251ENST00000636853 ODF3L2Q3SX64 289 aa11.48□□□□□ -0.57
CLN3-251ENST00000636853 ZNF876PQ49A33 203 aa11.48□□□□□ -0.57
CLN3-251ENST00000636853 DEFB104AQ8WTQ1 72 aa11.48□□□□□ -0.57
CLN3-251ENST00000636853 A0A1W2PPM0 123 aa11.48□□□□□ -0.57
CLN3-251ENST00000636853 H3BUT2 72 aa11.48□□□□□ -0.57
CLN3-251ENST00000636853 ODF1Q14990 250 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms