RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 SNAI2O43623 268 aa12.37□□□□□ -0.43
CLN3-247ENST00000636351 GATCO43716 136 aaKnown RBP12.37□□□□□ -0.43
CLN3-247ENST00000636351 OR5AL1P0C617 328 aa12.37□□□□□ -0.43
CLN3-247ENST00000636351 GATA1P15976 413 aaPredicted RBP12.37□□□□□ -0.43
CLN3-247ENST00000636351 ERVFC1-1P60608 527 aa12.37□□□□□ -0.43
CLN3-247ENST00000636351 LINC01551Q86U37 167 aa12.37□□□□□ -0.43
CLN3-247ENST00000636351 ABCA13Q86UQ4 5058 aa12.36□□□□□ -0.43
CLN3-247ENST00000636351 A0A087WWL8 130 aa12.36□□□□□ -0.43
CLN3-247ENST00000636351 RHODO00212 210 aa12.36□□□□□ -0.43
CLN3-247ENST00000636351 GYPEP15421 78 aa12.36□□□□□ -0.43
CLN3-247ENST00000636351 CCL18P55774 89 aa12.36□□□□□ -0.43
CLN3-247ENST00000636351 TMEM241Q24JQ0 296 aa12.36□□□□□ -0.43
CLN3-247ENST00000636351 SOHLH1Q5JUK2 328 aa12.36□□□□□ -0.43
CLN3-247ENST00000636351 SAMD10Q9BYL1 202 aa12.36□□□□□ -0.43
CLN3-247ENST00000636351 A0A096LPF7 62 aa12.35□□□□□ -0.43
CLN3-247ENST00000636351 ADIRFQ15847 76 aa12.35□□□□□ -0.43
CLN3-247ENST00000636351 Q6ZR54 194 aa12.35□□□□□ -0.43
CLN3-247ENST00000636351 SFRP2Q96HF1 295 aa12.35□□□□□ -0.43
CLN3-247ENST00000636351 PRADC1Q9BSG0 188 aa12.35□□□□□ -0.43
CLN3-247ENST00000636351 NAT8Q9UHE5 227 aa12.35□□□□□ -0.43
CLN3-247ENST00000636351 A0A1W2PPQ1 181 aa12.34□□□□□ -0.43
CLN3-247ENST00000636351 NXPH4O95158 308 aa12.34□□□□□ -0.43
CLN3-247ENST00000636351 IGLC6P0CF74 106 aa12.34□□□□□ -0.43
CLN3-247ENST00000636351 SRIP30626 198 aa12.34□□□□□ -0.43
CLN3-247ENST00000636351 RHOHQ15669 191 aa12.34□□□□□ -0.43
CLN3-247ENST00000636351 MRPL23Q16540 153 aaKnown RBP12.34□□□□□ -0.43
CLN3-247ENST00000636351 ZFP2Q6ZN57 461 aa12.34□□□□□ -0.43
CLN3-247ENST00000636351 FAM231DQ6ZW35 169 aa12.34□□□□□ -0.43
CLN3-247ENST00000636351 SLC25A29Q8N8R3 303 aa12.34□□□□□ -0.43
CLN3-247ENST00000636351 SSBP4Q9BWG4 385 aaPredicted RBP12.34□□□□□ -0.43
CLN3-247ENST00000636351 LOC100131303A0A0U1RQF7 123 aa12.33□□□□□ -0.44
CLN3-247ENST00000636351 K7EQD1 137 aa12.33□□□□□ -0.44
CLN3-247ENST00000636351 CACNG7P62955 275 aa12.33□□□□□ -0.44
CLN3-247ENST00000636351 RNF212Q495C1 297 aa12.33□□□□□ -0.44
CLN3-247ENST00000636351 C15orf54Q8N8G6 183 aa12.33□□□□□ -0.44
CLN3-247ENST00000636351 AP1S3Q96PC3 154 aa12.33□□□□□ -0.44
CLN3-247ENST00000636351 F2Z2F3 143 aa12.32□□□□□ -0.44
CLN3-247ENST00000636351 SMIM17P0DL12 118 aa12.32□□□□□ -0.44
CLN3-247ENST00000636351 RPL23P62829 140 aaKnown RBP12.32□□□□□ -0.44
CLN3-247ENST00000636351 LYZL1Q6UWQ5 148 aa12.32□□□□□ -0.44
CLN3-247ENST00000636351 TRBV6-4A0A1B0GX49 114 aa12.31□□□□□ -0.44
CLN3-247ENST00000636351 A8MWL6 223 aa12.31□□□□□ -0.44
CLN3-247ENST00000636351 ZNF56Q15929 161 aa12.31□□□□□ -0.44
CLN3-247ENST00000636351 UFSP1Q6NVU6 142 aa12.31□□□□□ -0.44
CLN3-247ENST00000636351 NEGR1Q7Z3B1 354 aa12.31□□□□□ -0.44
CLN3-247ENST00000636351 ISOC2Q96AB3 205 aa12.31□□□□□ -0.44
CLN3-247ENST00000636351 OSTCQ9NRP0 149 aa12.31□□□□□ -0.44
CLN3-247ENST00000636351 LINC00588Q9Y4M8 146 aa12.31□□□□□ -0.44
CLN3-247ENST00000636351 CRYGDP07320 174 aa12.3□□□□□ -0.44
CLN3-247ENST00000636351 CTRLP40313 264 aa12.3□□□□□ -0.44
CLN3-247ENST00000636351 CT83Q5H943 113 aa12.3□□□□□ -0.44
CLN3-247ENST00000636351 Q6ZSN1 163 aa12.3□□□□□ -0.44
CLN3-247ENST00000636351 FAM3BP58499 235 aaPredicted RBP12.29□□□□□ -0.44
CLN3-247ENST00000636351 ESRGQ1W209 222 aa12.29□□□□□ -0.44
CLN3-247ENST00000636351 C14orf178Q8N769 122 aaPredicted RBP12.29□□□□□ -0.44
CLN3-247ENST00000636351 MGPP08493 103 aa12.28□□□□□ -0.44
CLN3-247ENST00000636351 TRGC1P0CF51 173 aa12.28□□□□□ -0.44
CLN3-247ENST00000636351 C1orf134Q5TEV5 83 aa12.28□□□□□ -0.44
CLN3-247ENST00000636351 SH2D6Q7Z4S9 175 aa12.28□□□□□ -0.44
CLN3-247ENST00000636351 OR10G8Q8NGN5 311 aa12.28□□□□□ -0.44
CLN3-247ENST00000636351 GTSF1Q8WW33 167 aa12.28□□□□□ -0.44
CLN3-247ENST00000636351 PGLYRP4Q96LB8 373 aa12.28□□□□□ -0.44
CLN3-247ENST00000636351 MSRB1Q9NZV6 116 aa12.28□□□□□ -0.44
CLN3-247ENST00000636351 GAGE12JA6NER3 117 aa12.27□□□□□ -0.45
CLN3-247ENST00000636351 F5H697 171 aa12.27□□□□□ -0.45
CLN3-247ENST00000636351 GAGE1Q13065 139 aa12.27□□□□□ -0.45
CLN3-247ENST00000636351 GAGE4Q13068 117 aa12.27□□□□□ -0.45
CLN3-247ENST00000636351 GAGE5Q13069 117 aa12.27□□□□□ -0.45
CLN3-247ENST00000636351 TWIST1Q15672 202 aa12.27□□□□□ -0.45
CLN3-247ENST00000636351 GAGE13Q4V321 117 aa12.27□□□□□ -0.45
CLN3-247ENST00000636351 COMMD7Q86VX2 200 aa12.27□□□□□ -0.45
CLN3-247ENST00000636351 TSKUQ8WUA8 353 aa12.27□□□□□ -0.45
CLN3-247ENST00000636351 BORCS7Q96B45 105 aa12.27□□□□□ -0.45
CLN3-247ENST00000636351 KRTAP4-5Q9BYR2 181 aa12.27□□□□□ -0.45
CLN3-247ENST00000636351 MRPS16Q9Y3D3 137 aaKnown RBP12.27□□□□□ -0.45
CLN3-247ENST00000636351 NTF3P20783 257 aa12.26□□□□□ -0.45
CLN3-247ENST00000636351 RAB4BP61018 213 aa12.26□□□□□ -0.45
CLN3-247ENST00000636351 UQCC3Q6UW78 93 aa12.26□□□□□ -0.45
CLN3-247ENST00000636351 V9GYV3 84 aa12.26□□□□□ -0.45
CLN3-247ENST00000636351 HIGD1CA8MV81 97 aa12.25□□□□□ -0.45
CLN3-247ENST00000636351 WDR73Q6P4I2 378 aa12.25□□□□□ -0.45
CLN3-247ENST00000636351 ZNRF2Q8NHG8 242 aa12.25□□□□□ -0.45
CLN3-247ENST00000636351 LYPD5Q6UWN5 251 aa12.24□□□□□ -0.45
CLN3-247ENST00000636351 SMIM15Q7Z3B0 74 aa12.24□□□□□ -0.45
CLN3-247ENST00000636351 CNFNQ9BYD5 112 aa12.24□□□□□ -0.45
CLN3-247ENST00000636351 GFRA4Q9GZZ7 299 aa12.24□□□□□ -0.45
CLN3-247ENST00000636351 HSPG2P98160 4391 aa12.23□□□□□ -0.45
CLN3-247ENST00000636351 EVI2AP22794 236 aa12.23□□□□□ -0.45
CLN3-247ENST00000636351 ATP6V0E2Q8NHE4 81 aa12.23□□□□□ -0.45
CLN3-247ENST00000636351 UPK3BQ9BT76 320 aa12.23□□□□□ -0.45
CLN3-247ENST00000636351 DPH3P1Q9H4G8 78 aa12.23□□□□□ -0.45
CLN3-247ENST00000636351 TRBV10-1A0A0K0K1A3 114 aa12.22□□□□□ -0.45
CLN3-247ENST00000636351 RPL36AP83881 106 aaKnown RBP12.22□□□□□ -0.45
CLN3-247ENST00000636351 PNRC1Q12796 327 aaPredicted RBP12.22□□□□□ -0.45
CLN3-247ENST00000636351 RPL36ALQ969Q0 106 aaKnown RBP12.22□□□□□ -0.45
CLN3-247ENST00000636351 Q9H8V8 135 aa12.22□□□□□ -0.45
CLN3-247ENST00000636351 Q9UF83 564 aa12.22□□□□□ -0.45
CLN3-247ENST00000636351 KIF25-AS1Q9Y6Z4 181 aa12.22□□□□□ -0.45
CLN3-247ENST00000636351 A0A1B0GUT8 65 aa12.21□□□□□ -0.45
CLN3-247ENST00000636351 FAM231BA6NCW3 169 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms