RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 C10orf99Q6UWK7 81 aa9.49□□□□□ -0.89
LINC00540-203ENST00000631321 KIR2DL4Q99706 377 aa9.49□□□□□ -0.89
LINC00540-203ENST00000631321 COL12A1Q99715 3063 aa9.49□□□□□ -0.89
LINC00540-203ENST00000631321 CFAP46Q8IYW2 2715 aa9.49□□□□□ -0.89
LINC00540-203ENST00000631321 PMVKQ15126 192 aa9.48□□□□□ -0.89
LINC00540-203ENST00000631321 WFDC12Q8WWY7 111 aa9.48□□□□□ -0.89
LINC00540-203ENST00000631321 ZNF479Q96JC4 524 aa9.48□□□□□ -0.89
LINC00540-203ENST00000631321 SDHAF1A6NFY7 115 aa9.48□□□□□ -0.89
LINC00540-203ENST00000631321 RRN3P1Q2M238 152 aa9.48□□□□□ -0.89
LINC00540-203ENST00000631321 SPG11Q96JI7 2443 aa9.48□□□□□ -0.89
LINC00540-203ENST00000631321 C11orf86A6NJI1 115 aa9.47□□□□□ -0.89
LINC00540-203ENST00000631321 SYT8Q8NBV8 401 aa9.47□□□□□ -0.89
LINC00540-203ENST00000631321 MDFICQ9P1T7 246 aa9.47□□□□□ -0.89
LINC00540-203ENST00000631321 ZNF815PA8K554 130 aa9.47□□□□□ -0.89
LINC00540-203ENST00000631321 F5H697 171 aa9.47□□□□□ -0.89
LINC00540-203ENST00000631321 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.47□□□□□ -0.89
LINC00540-203ENST00000631321 IGHV1OR15-1A0A075B7D0 117 aa9.46□□□□□ -0.89
LINC00540-203ENST00000631321 M0QY20 66 aa9.46□□□□□ -0.89
LINC00540-203ENST00000631321 MORN3Q6PF18 240 aaPredicted RBP9.46□□□□□ -0.89
LINC00540-203ENST00000631321 Q8N1Y9 231 aa9.46□□□□□ -0.89
LINC00540-203ENST00000631321 ELANEP08246 267 aa9.46□□□□□ -0.9
LINC00540-203ENST00000631321 HERVK_113P61574 105 aa9.46□□□□□ -0.9
LINC00540-203ENST00000631321 RPL39P62891 51 aaKnown RBP9.46□□□□□ -0.9
LINC00540-203ENST00000631321 RHOHQ15669 191 aa9.46□□□□□ -0.9
LINC00540-203ENST00000631321 TRAV12-2A0A075B6T6 113 aa9.45□□□□□ -0.9
LINC00540-203ENST00000631321 F8W1H4 67 aa9.45□□□□□ -0.9
LINC00540-203ENST00000631321 ZNF876PQ49A33 203 aa9.45□□□□□ -0.9
LINC00540-203ENST00000631321 ZNF256Q9Y2P7 627 aaPredicted RBP9.45□□□□□ -0.9
LINC00540-203ENST00000631321 FSHBP01225 129 aa9.45□□□□□ -0.9
LINC00540-203ENST00000631321 SYNJ2BPP57105 145 aa9.45□□□□□ -0.9
LINC00540-203ENST00000631321 COTL1Q14019 142 aa9.45□□□□□ -0.9
LINC00540-203ENST00000631321 NSUN5P1Q3KNT7 163 aa9.45□□□□□ -0.9
LINC00540-203ENST00000631321 AMTNQ6UX39 209 aa9.45□□□□□ -0.9
LINC00540-203ENST00000631321 NRGNQ92686 78 aa9.45□□□□□ -0.9
LINC00540-203ENST00000631321 PLEKHB2Q96CS7 222 aa9.45□□□□□ -0.9
LINC00540-203ENST00000631321 AGRNO00468 2067 aa9.45□□□□□ -0.9
LINC00540-203ENST00000631321 SCGB2A2Q13296 93 aa9.44□□□□□ -0.9
LINC00540-203ENST00000631321 CD300EQ496F6 205 aaPredicted RBP9.44□□□□□ -0.9
LINC00540-203ENST00000631321 TRPT1Q86TN4 253 aaKnown RBP9.44□□□□□ -0.9
LINC00540-203ENST00000631321 VPREB3Q9UKI3 123 aa9.44□□□□□ -0.9
LINC00540-203ENST00000631321 USP9XQ93008 2570 aaPredicted RBP9.44□□□□□ -0.9
LINC00540-203ENST00000631321 TMEM238LA0A1B0GVL6 79 aa9.44□□□□□ -0.9
LINC00540-203ENST00000631321 A6NJY4 79 aa9.44□□□□□ -0.9
LINC00540-203ENST00000631321 HOXA3O43365 443 aaPredicted RBP9.44□□□□□ -0.9
LINC00540-203ENST00000631321 IGKV3-20P01619 116 aa9.44□□□□□ -0.9
LINC00540-203ENST00000631321 UBE2D1P51668 147 aa9.44□□□□□ -0.9
LINC00540-203ENST00000631321 UBE2E2Q96LR5 201 aa9.44□□□□□ -0.9
LINC00540-203ENST00000631321 CSPG4Q6UVK1 2322 aa9.44□□□□□ -0.9
LINC00540-203ENST00000631321 PIEZO1Q92508 2521 aa9.43□□□□□ -0.9
LINC00540-203ENST00000631321 SPINK13Q1W4C9 94 aa9.43□□□□□ -0.9
LINC00540-203ENST00000631321 FAM74A4Q5TZK3 123 aa9.43□□□□□ -0.9
LINC00540-203ENST00000631321 SCGB1D4Q6XE38 83 aa9.43□□□□□ -0.9
LINC00540-203ENST00000631321 ZNF702PQ9H963 129 aa9.43□□□□□ -0.9
LINC00540-203ENST00000631321 HOXD3P31249 432 aaPredicted RBP9.43□□□□□ -0.9
LINC00540-203ENST00000631321 ZNF56Q15929 161 aa9.43□□□□□ -0.9
LINC00540-203ENST00000631321 NFE4Q86UQ8 179 aa9.43□□□□□ -0.9
LINC00540-203ENST00000631321 KLHL30-AS1Q8NEE0 82 aa9.43□□□□□ -0.9
LINC00540-203ENST00000631321 ZNRF2Q8NHG8 242 aa9.43□□□□□ -0.9
LINC00540-203ENST00000631321 CACNA1AO00555 2505 aa9.42□□□□□ -0.9
LINC00540-203ENST00000631321 CELSR2Q9HCU4 2923 aa9.42□□□□□ -0.9
LINC00540-203ENST00000631321 TRGV11A0A075B6L2 103 aa9.42□□□□□ -0.9
LINC00540-203ENST00000631321 A0A0J9YY99 117 aa9.42□□□□□ -0.9
LINC00540-203ENST00000631321 TEX48A0A1B0GUV7 120 aa9.42□□□□□ -0.9
LINC00540-203ENST00000631321 Q6YL49 198 aa9.42□□□□□ -0.9
LINC00540-203ENST00000631321 EDA2RQ9HAV5 297 aa9.42□□□□□ -0.9
LINC00540-203ENST00000631321 PRO0461Q9UI25 63 aa9.42□□□□□ -0.9
LINC00540-203ENST00000631321 FLNCQ14315 2725 aa9.42□□□□□ -0.9
LINC00540-203ENST00000631321 A8MTW9 85 aa9.42□□□□□ -0.9
LINC00540-203ENST00000631321 TGFAP01135 160 aa9.42□□□□□ -0.9
LINC00540-203ENST00000631321 EMP1P54849 157 aa9.42□□□□□ -0.9
LINC00540-203ENST00000631321 SPANXB1Q9NS25 103 aaPredicted RBP9.42□□□□□ -0.9
LINC00540-203ENST00000631321 H3BMG7 143 aa9.41□□□□□ -0.9
LINC00540-203ENST00000631321 RPL24P83731 157 aaKnown RBP9.41□□□□□ -0.9
LINC00540-203ENST00000631321 WFDC2Q14508 124 aa9.41□□□□□ -0.9
LINC00540-203ENST00000631321 DEFB104AQ8WTQ1 72 aa9.41□□□□□ -0.9
LINC00540-203ENST00000631321 AMELXQ99217 191 aa9.41□□□□□ -0.9
LINC00540-203ENST00000631321 P0DMU3 169 aa9.41□□□□□ -0.9
LINC00540-203ENST00000631321 FAM231AP0DMU4 169 aa9.41□□□□□ -0.9
LINC00540-203ENST00000631321 FAM231CP0DMU5 169 aa9.41□□□□□ -0.9
LINC00540-203ENST00000631321 TSPEAR-AS2P59090 65 aa9.41□□□□□ -0.9
LINC00540-203ENST00000631321 SRSF9Q13242 221 aaKnown RBP eCLIP9.41□□□□□ -0.9
LINC00540-203ENST00000631321 C20orf203Q8NBC4 194 aa9.4□□□□□ -0.9
LINC00540-203ENST00000631321 PGPEP1Q9NXJ5 209 aa9.4□□□□□ -0.9
LINC00540-203ENST00000631321 I3L3M4 83 aa9.4□□□□□ -0.91
LINC00540-203ENST00000631321 TMEM170BQ5T4T1 132 aa9.4□□□□□ -0.91
LINC00540-203ENST00000631321 SLC25A29Q8N8R3 303 aa9.4□□□□□ -0.91
LINC00540-203ENST00000631321 GAGE13Q4V321 117 aa9.39□□□□□ -0.91
LINC00540-203ENST00000631321 TCTEX1D4Q5JR98 221 aa9.39□□□□□ -0.91
LINC00540-203ENST00000631321 DUX5Q96PT3 197 aa9.39□□□□□ -0.91
LINC00540-203ENST00000631321 IGSF10Q6WRI0 2623 aa9.39□□□□□ -0.91
LINC00540-203ENST00000631321 RBMY1A1P0DJD3 496 aaKnown RBP9.39□□□□□ -0.91
LINC00540-203ENST00000631321 RBMY1CP0DJD4 496 aa9.39□□□□□ -0.91
LINC00540-203ENST00000631321 MAP1AP78559 2803 aaPredicted RBP9.39□□□□□ -0.91
LINC00540-203ENST00000631321 RBMY1FQ15415 496 aaKnown RBP9.39□□□□□ -0.91
LINC00540-203ENST00000631321 TRAV2A0A0B4J234 112 aa9.38□□□□□ -0.91
LINC00540-203ENST00000631321 J3QQQ9 107 aa9.38□□□□□ -0.91
LINC00540-203ENST00000631321 IGHV3-30P01768 117 aa9.38□□□□□ -0.91
LINC00540-203ENST00000631321 IGHV3-30-5P0DP03 117 aa9.38□□□□□ -0.91
LINC00540-203ENST00000631321 MRPL16Q9NX20 251 aaKnown RBP9.38□□□□□ -0.91
LINC00540-203ENST00000631321 TMEM223A0PJW6 202 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms