RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 NACAE9PAV3 2078 aa12.58□□□□□ -0.4
CLN3-239ENST00000628023 NXPH4O95158 308 aa12.57□□□□□ -0.4
CLN3-239ENST00000628023 SRIP30626 198 aa12.57□□□□□ -0.4
CLN3-239ENST00000628023 CACNG7P62955 275 aa12.57□□□□□ -0.4
CLN3-239ENST00000628023 RHOHQ15669 191 aa12.57□□□□□ -0.4
CLN3-239ENST00000628023 MRPL23Q16540 153 aaKnown RBP12.57□□□□□ -0.4
CLN3-239ENST00000628023 C15orf54Q8N8G6 183 aa12.57□□□□□ -0.4
CLN3-239ENST00000628023 F2Z2F3 143 aa12.56□□□□□ -0.4
CLN3-239ENST00000628023 K7EQD1 137 aa12.56□□□□□ -0.4
CLN3-239ENST00000628023 SMIM17P0DL12 118 aa12.56□□□□□ -0.4
CLN3-239ENST00000628023 RPL23P62829 140 aaKnown RBP12.56□□□□□ -0.4
CLN3-239ENST00000628023 RNF212Q495C1 297 aa12.56□□□□□ -0.4
CLN3-239ENST00000628023 LYZL1Q6UWQ5 148 aa12.56□□□□□ -0.4
CLN3-239ENST00000628023 SLC25A29Q8N8R3 303 aa12.56□□□□□ -0.4
CLN3-239ENST00000628023 AP1S3Q96PC3 154 aa12.56□□□□□ -0.4
CLN3-239ENST00000628023 TRBV6-4A0A1B0GX49 114 aa12.55□□□□□ -0.4
CLN3-239ENST00000628023 A8MWL6 223 aa12.55□□□□□ -0.4
CLN3-239ENST00000628023 CTRLP40313 264 aa12.55□□□□□ -0.4
CLN3-239ENST00000628023 ISOC2Q96AB3 205 aa12.55□□□□□ -0.4
CLN3-239ENST00000628023 OSTCQ9NRP0 149 aa12.55□□□□□ -0.4
CLN3-239ENST00000628023 LOC100131303A0A0U1RQF7 123 aa12.54□□□□□ -0.4
CLN3-239ENST00000628023 ZNF56Q15929 161 aa12.54□□□□□ -0.4
CLN3-239ENST00000628023 CT83Q5H943 113 aa12.54□□□□□ -0.4
CLN3-239ENST00000628023 NEGR1Q7Z3B1 354 aa12.54□□□□□ -0.4
CLN3-239ENST00000628023 CRYGDP07320 174 aa12.53□□□□□ -0.4
CLN3-239ENST00000628023 UFSP1Q6NVU6 142 aa12.53□□□□□ -0.4
CLN3-239ENST00000628023 LINC00336Q6ZUF6 198 aa12.53□□□□□ -0.4
CLN3-239ENST00000628023 FAM3BP58499 235 aaPredicted RBP12.52□□□□□ -0.41
CLN3-239ENST00000628023 Q6ZSN1 163 aa12.52□□□□□ -0.41
CLN3-239ENST00000628023 C14orf178Q8N769 122 aaPredicted RBP12.52□□□□□ -0.41
CLN3-239ENST00000628023 OR10G8Q8NGN5 311 aa12.52□□□□□ -0.41
CLN3-239ENST00000628023 GTSF1Q8WW33 167 aa12.52□□□□□ -0.41
CLN3-239ENST00000628023 BORCS7Q96B45 105 aa12.52□□□□□ -0.41
CLN3-239ENST00000628023 LINC00588Q9Y4M8 146 aa12.52□□□□□ -0.41
CLN3-239ENST00000628023 F5H697 171 aa12.51□□□□□ -0.41
CLN3-239ENST00000628023 TRGC1P0CF51 173 aa12.51□□□□□ -0.41
CLN3-239ENST00000628023 TWIST1Q15672 202 aa12.51□□□□□ -0.41
CLN3-239ENST00000628023 ESRGQ1W209 222 aa12.51□□□□□ -0.41
CLN3-239ENST00000628023 UQCC3Q6UW78 93 aa12.51□□□□□ -0.41
CLN3-239ENST00000628023 SH2D6Q7Z4S9 175 aa12.51□□□□□ -0.41
CLN3-239ENST00000628023 COMMD7Q86VX2 200 aa12.51□□□□□ -0.41
CLN3-239ENST00000628023 TSKUQ8WUA8 353 aa12.51□□□□□ -0.41
CLN3-239ENST00000628023 PGLYRP4Q96LB8 373 aa12.51□□□□□ -0.41
CLN3-239ENST00000628023 MGPP08493 103 aa12.5□□□□□ -0.41
CLN3-239ENST00000628023 NTF3P20783 257 aa12.5□□□□□ -0.41
CLN3-239ENST00000628023 MSRB1Q9NZV6 116 aa12.5□□□□□ -0.41
CLN3-239ENST00000628023 GAGE12JA6NER3 117 aa12.49□□□□□ -0.41
CLN3-239ENST00000628023 RAB4BP61018 213 aa12.49□□□□□ -0.41
CLN3-239ENST00000628023 GAGE1Q13065 139 aa12.49□□□□□ -0.41
CLN3-239ENST00000628023 GAGE4Q13068 117 aa12.49□□□□□ -0.41
CLN3-239ENST00000628023 GAGE5Q13069 117 aa12.49□□□□□ -0.41
CLN3-239ENST00000628023 GAGE13Q4V321 117 aa12.49□□□□□ -0.41
CLN3-239ENST00000628023 WDR73Q6P4I2 378 aa12.49□□□□□ -0.41
CLN3-239ENST00000628023 V9GYV3 84 aa12.49□□□□□ -0.41
CLN3-239ENST00000628023 IGLV2-18A0A075B6J9 118 aa12.48□□□□□ -0.41
CLN3-239ENST00000628023 HIGD1CA8MV81 97 aa12.48□□□□□ -0.41
CLN3-239ENST00000628023 SMIM15Q7Z3B0 74 aa12.48□□□□□ -0.41
CLN3-239ENST00000628023 CNFNQ9BYD5 112 aa12.48□□□□□ -0.41
CLN3-239ENST00000628023 GFRA4Q9GZZ7 299 aa12.48□□□□□ -0.41
CLN3-239ENST00000628023 MRPS16Q9Y3D3 137 aaKnown RBP12.48□□□□□ -0.41
CLN3-239ENST00000628023 VPS13DQ5THJ4 4388 aa12.48□□□□□ -0.41
CLN3-239ENST00000628023 FAM231BA6NCW3 169 aa12.47□□□□□ -0.41
CLN3-239ENST00000628023 PNRC1Q12796 327 aaPredicted RBP12.47□□□□□ -0.41
CLN3-239ENST00000628023 LYPD5Q6UWN5 251 aa12.47□□□□□ -0.41
CLN3-239ENST00000628023 TRBV10-1A0A0K0K1A3 114 aa12.46□□□□□ -0.41
CLN3-239ENST00000628023 EVI2AP22794 236 aa12.46□□□□□ -0.41
CLN3-239ENST00000628023 ZNRF2Q8NHG8 242 aa12.46□□□□□ -0.41
CLN3-239ENST00000628023 DPH3P1Q9H4G8 78 aa12.46□□□□□ -0.41
CLN3-239ENST00000628023 DNAH10Q8IVF4 4471 aa12.46□□□□□ -0.42
CLN3-239ENST00000628023 A0A1B0GUT8 65 aa12.45□□□□□ -0.42
CLN3-239ENST00000628023 F8W036 122 aa12.45□□□□□ -0.42
CLN3-239ENST00000628023 M0R2N4 97 aa12.45□□□□□ -0.42
CLN3-239ENST00000628023 RPL36AP83881 106 aaKnown RBP12.45□□□□□ -0.42
CLN3-239ENST00000628023 ATP6V0E2Q8NHE4 81 aa12.45□□□□□ -0.42
CLN3-239ENST00000628023 RPL36ALQ969Q0 106 aaKnown RBP12.45□□□□□ -0.42
CLN3-239ENST00000628023 UPK3BQ9BT76 320 aa12.45□□□□□ -0.42
CLN3-239ENST00000628023 NAT8BQ9UHF3 227 aa12.45□□□□□ -0.42
CLN3-239ENST00000628023 KIF25-AS1Q9Y6Z4 181 aa12.45□□□□□ -0.42
CLN3-239ENST00000628023 TMEM218A2RU14 115 aa12.44□□□□□ -0.42
CLN3-239ENST00000628023 FOXA3P55318 350 aaPredicted RBP12.44□□□□□ -0.42
CLN3-239ENST00000628023 LINC00862A6NCI5 91 aa12.43□□□□□ -0.42
CLN3-239ENST00000628023 H7C1H1 209 aa12.43□□□□□ -0.42
CLN3-239ENST00000628023 NUP35Q8NFH5 326 aa12.43□□□□□ -0.42
CLN3-239ENST00000628023 KRTAP17-1Q9BYP8 105 aa12.43□□□□□ -0.42
CLN3-239ENST00000628023 Q9H8V8 135 aa12.43□□□□□ -0.42
CLN3-239ENST00000628023 Q9UF83 564 aa12.43□□□□□ -0.42
CLN3-239ENST00000628023 DNAH6Q9C0G6 4158 aa12.43□□□□□ -0.42
CLN3-239ENST00000628023 PPP1R2P9O14990 202 aa12.42□□□□□ -0.42
CLN3-239ENST00000628023 LINC00694P0DN24 101 aa12.42□□□□□ -0.42
CLN3-239ENST00000628023 RIGQ13278 110 aa12.42□□□□□ -0.42
CLN3-239ENST00000628023 GTSF1LQ9H1H1 148 aa12.42□□□□□ -0.42
CLN3-239ENST00000628023 HECTD4Q9Y4D8 3996 aa12.42□□□□□ -0.42
CLN3-239ENST00000628023 TRBV7-3A0A075B6L6 115 aa12.41□□□□□ -0.42
CLN3-239ENST00000628023 SMIM27A0A1W2PRY6 76 aa12.41□□□□□ -0.42
CLN3-239ENST00000628023 PRSS29PA6NIE9 313 aa12.41□□□□□ -0.42
CLN3-239ENST00000628023 MT-ND4LP03901 98 aa12.41□□□□□ -0.42
CLN3-239ENST00000628023 ADCYAP1P18509 176 aa12.41□□□□□ -0.42
CLN3-239ENST00000628023 TIRAPP58753 221 aa12.41□□□□□ -0.42
CLN3-239ENST00000628023 LINC00315P59091 139 aa12.41□□□□□ -0.42
CLN3-239ENST00000628023 SUMO4Q6EEV6 95 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms