RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 MRPL23Q16540 153 aaKnown RBP14.07□□□□□ -0.16
PTCD3-220ENST00000627371 SLC25A29Q8N8R3 303 aa14.07□□□□□ -0.16
PTCD3-220ENST00000627371 A0A087WWL8 130 aa14.06□□□□□ -0.16
PTCD3-220ENST00000627371 F2Z2F3 143 aa14.06□□□□□ -0.16
PTCD3-220ENST00000627371 CRYGDP07320 174 aa14.06□□□□□ -0.16
PTCD3-220ENST00000627371 FAM3BP58499 235 aaPredicted RBP14.06□□□□□ -0.16
PTCD3-220ENST00000627371 RPL23P62829 140 aaKnown RBP14.06□□□□□ -0.16
PTCD3-220ENST00000627371 CT83Q5H943 113 aa14.06□□□□□ -0.16
PTCD3-220ENST00000627371 FAM74A4Q5TZK3 123 aa14.06□□□□□ -0.16
PTCD3-220ENST00000627371 PRADC1Q9BSG0 188 aa14.06□□□□□ -0.16
PTCD3-220ENST00000627371 LINC00588Q9Y4M8 146 aa14.06□□□□□ -0.16
PTCD3-220ENST00000627371 SRIP30626 198 aa14.05□□□□□ -0.16
PTCD3-220ENST00000627371 CTRLP40313 264 aa14.05□□□□□ -0.16
PTCD3-220ENST00000627371 CACNG7P62955 275 aa14.05□□□□□ -0.16
PTCD3-220ENST00000627371 Q6ZSN1 163 aa14.05□□□□□ -0.16
PTCD3-220ENST00000627371 ISOC2Q96AB3 205 aa14.05□□□□□ -0.16
PTCD3-220ENST00000627371 OSTCQ9NRP0 149 aa14.05□□□□□ -0.16
PTCD3-220ENST00000627371 LOC100131303A0A0U1RQF7 123 aa14.04□□□□□ -0.16
PTCD3-220ENST00000627371 SSTP61278 116 aa14.04□□□□□ -0.16
PTCD3-220ENST00000627371 ADIRFQ15847 76 aa14.04□□□□□ -0.16
PTCD3-220ENST00000627371 ESRGQ1W209 222 aa14.04□□□□□ -0.16
PTCD3-220ENST00000627371 LYZL1Q6UWQ5 148 aa14.04□□□□□ -0.16
PTCD3-220ENST00000627371 A8MWL6 223 aa14.03□□□□□ -0.16
PTCD3-220ENST00000627371 NEGR1Q7Z3B1 354 aa14.03□□□□□ -0.16
PTCD3-220ENST00000627371 GTSF1Q8WW33 167 aa14.03□□□□□ -0.16
PTCD3-220ENST00000627371 AP1S3Q96PC3 154 aa14.03□□□□□ -0.16
PTCD3-220ENST00000627371 CNFNQ9BYD5 112 aa14.03□□□□□ -0.16
PTCD3-220ENST00000627371 WDR73Q6P4I2 378 aa14.02□□□□□ -0.17
PTCD3-220ENST00000627371 C15orf54Q8N8G6 183 aa14.02□□□□□ -0.17
PTCD3-220ENST00000627371 SH2D6Q7Z4S9 175 aa14.01□□□□□ -0.17
PTCD3-220ENST00000627371 C14orf178Q8N769 122 aaPredicted RBP14.01□□□□□ -0.17
PTCD3-220ENST00000627371 UPK3BQ9BT76 320 aa14.01□□□□□ -0.17
PTCD3-220ENST00000627371 MRPS16Q9Y3D3 137 aaKnown RBP14.01□□□□□ -0.17
PTCD3-220ENST00000627371 ZNRF2Q8NHG8 242 aa14□□□□□ -0.17
PTCD3-220ENST00000627371 TSKUQ8WUA8 353 aa14□□□□□ -0.17
PTCD3-220ENST00000627371 MSRB1Q9NZV6 116 aa14□□□□□ -0.17
PTCD3-220ENST00000627371 V9GYV3 84 aa14□□□□□ -0.17
PTCD3-220ENST00000627371 SMIM17P0DL12 118 aa13.99□□□□□ -0.17
PTCD3-220ENST00000627371 NTF3P20783 257 aa13.99□□□□□ -0.17
PTCD3-220ENST00000627371 FOXA3P55318 350 aaPredicted RBP13.99□□□□□ -0.17
PTCD3-220ENST00000627371 RAB4BP61018 213 aa13.99□□□□□ -0.17
PTCD3-220ENST00000627371 ZNF56Q15929 161 aa13.99□□□□□ -0.17
PTCD3-220ENST00000627371 UQCC3Q6UW78 93 aa13.99□□□□□ -0.17
PTCD3-220ENST00000627371 LYPD5Q6UWN5 251 aa13.99□□□□□ -0.17
PTCD3-220ENST00000627371 GFRA4Q9GZZ7 299 aa13.99□□□□□ -0.17
PTCD3-220ENST00000627371 KIF25-AS1Q9Y6Z4 181 aa13.99□□□□□ -0.17
PTCD3-220ENST00000627371 TRGC1P0CF51 173 aa13.98□□□□□ -0.17
PTCD3-220ENST00000627371 OR10G8Q8NGN5 311 aa13.98□□□□□ -0.17
PTCD3-220ENST00000627371 FAM231BA6NCW3 169 aa13.97□□□□□ -0.17
PTCD3-220ENST00000627371 LINC00694P0DN24 101 aa13.97□□□□□ -0.17
PTCD3-220ENST00000627371 IGLV2-18A0A075B6J9 118 aa13.96□□□□□ -0.17
PTCD3-220ENST00000627371 TRBV10-1A0A0K0K1A3 114 aa13.96□□□□□ -0.17
PTCD3-220ENST00000627371 HIGD1CA8MV81 97 aa13.96□□□□□ -0.17
PTCD3-220ENST00000627371 LINC00315P59091 139 aa13.96□□□□□ -0.17
PTCD3-220ENST00000627371 TWIST1Q15672 202 aa13.96□□□□□ -0.17
PTCD3-220ENST00000627371 PGLYRP4Q96LB8 373 aa13.96□□□□□ -0.17
PTCD3-220ENST00000627371 Q9UF83 564 aa13.96□□□□□ -0.17
PTCD3-220ENST00000627371 GAGE12JA6NER3 117 aa13.95□□□□□ -0.18
PTCD3-220ENST00000627371 EVI2AP22794 236 aa13.95□□□□□ -0.18
PTCD3-220ENST00000627371 TIRAPP58753 221 aa13.95□□□□□ -0.18
PTCD3-220ENST00000627371 GAGE1Q13065 139 aa13.95□□□□□ -0.18
PTCD3-220ENST00000627371 GAGE4Q13068 117 aa13.95□□□□□ -0.18
PTCD3-220ENST00000627371 GAGE5Q13069 117 aa13.95□□□□□ -0.18
PTCD3-220ENST00000627371 GAGE13Q4V321 117 aa13.95□□□□□ -0.18
PTCD3-220ENST00000627371 F5H697 171 aa13.94□□□□□ -0.18
PTCD3-220ENST00000627371 PNRC1Q12796 327 aaPredicted RBP13.94□□□□□ -0.18
PTCD3-220ENST00000627371 COMMD7Q86VX2 200 aa13.94□□□□□ -0.18
PTCD3-220ENST00000627371 ATP6V0E2Q8NHE4 81 aa13.94□□□□□ -0.18
PTCD3-220ENST00000627371 DPH3P1Q9H4G8 78 aa13.94□□□□□ -0.18
PTCD3-220ENST00000627371 Q9H8V8 135 aa13.94□□□□□ -0.18
PTCD3-220ENST00000627371 LINC00862A6NCI5 91 aa13.93□□□□□ -0.18
PTCD3-220ENST00000627371 MGPP08493 103 aa13.93□□□□□ -0.18
PTCD3-220ENST00000627371 BORCS7Q96B45 105 aa13.93□□□□□ -0.18
PTCD3-220ENST00000627371 DNAH2Q9P225 4427 aa13.92□□□□□ -0.18
PTCD3-220ENST00000627371 M0R2N4 97 aa13.92□□□□□ -0.18
PTCD3-220ENST00000627371 Q6ZR54 194 aa13.92□□□□□ -0.18
PTCD3-220ENST00000627371 GTSF1LQ9H1H1 148 aa13.92□□□□□ -0.18
PTCD3-220ENST00000627371 FRAS1Q86XX4 4008 aa13.91□□□□□ -0.18
PTCD3-220ENST00000627371 DNAH10Q8IVF4 4471 aa13.91□□□□□ -0.18
PTCD3-220ENST00000627371 A0A1B0GUT8 65 aa13.91□□□□□ -0.18
PTCD3-220ENST00000627371 TMEM218A2RU14 115 aa13.91□□□□□ -0.18
PTCD3-220ENST00000627371 RPL36AP83881 106 aaKnown RBP13.91□□□□□ -0.18
PTCD3-220ENST00000627371 NUP35Q8NFH5 326 aa13.91□□□□□ -0.18
PTCD3-220ENST00000627371 RPL36ALQ969Q0 106 aaKnown RBP13.91□□□□□ -0.18
PTCD3-220ENST00000627371 NAT8BQ9UHF3 227 aa13.91□□□□□ -0.18
PTCD3-220ENST00000627371 TRBV7-3A0A075B6L6 115 aa13.9□□□□□ -0.18
PTCD3-220ENST00000627371 NBDYA0A0U1RRE5 68 aa13.9□□□□□ -0.18
PTCD3-220ENST00000627371 SMIM27A0A1W2PRY6 76 aa13.9□□□□□ -0.18
PTCD3-220ENST00000627371 SIVA1O15304 175 aa13.9□□□□□ -0.18
PTCD3-220ENST00000627371 ADCYAP1P18509 176 aa13.9□□□□□ -0.18
PTCD3-220ENST00000627371 SUMO4Q6EEV6 95 aa13.9□□□□□ -0.18
PTCD3-220ENST00000627371 SMIM15Q7Z3B0 74 aa13.9□□□□□ -0.18
PTCD3-220ENST00000627371 NEXN-AS1Q8NBZ9 246 aa13.9□□□□□ -0.18
PTCD3-220ENST00000627371 F8W036 122 aa13.88□□□□□ -0.19
PTCD3-220ENST00000627371 H7C1H1 209 aa13.88□□□□□ -0.19
PTCD3-220ENST00000627371 M0QY20 66 aa13.88□□□□□ -0.19
PTCD3-220ENST00000627371 PPP1R2P9O14990 202 aa13.88□□□□□ -0.19
PTCD3-220ENST00000627371 UBE2D3P61077 147 aa13.88□□□□□ -0.19
PTCD3-220ENST00000627371 UBE2D2P62837 147 aa13.88□□□□□ -0.19
PTCD3-220ENST00000627371 LELP1Q5T871 98 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms